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Clues to Coral Reef Health: Integrating Radiative Transfer Modeling and Hyperspectral Data

An important contribution to coral reef research is to improve spectral distinction between various health states of coral species in areas subject to harmful anthropogenic activity and climate change. New insights into radiative transfer properties of corals under healthy and stressed conditions can advance understandings of ecological processes on reefs and allow better assessments of the impacts of large-scale bleaching and disease events, Our objective was to examine the spectral and spatial properties of hyperspectral sensors that may be used to remotely sense changes in reef community health. We compare in situ reef environment spectra (healthy coral, stressed coral, dead coral, algae, and sand) with airborne hyperspectral data to identify important spectral characteristics and indices. Additionally, spectral measurements over a range of water depths, relief, and bottom types are compared to help quantify bottom-water column influences. In situ spectra were collected in July and August 2002 at the Long Rock site in the Andros Island, Bahamas coastal zone coral reef. Our primary emphasis was on Acropora palmata (or elkhorn coral), a major reef building coral, which is prevalent in the study area, but is suffering from white band disease. A. palmata is currently being, proposed as an endangered species because its populations have severely declined in many areas of the Caribbean. In addition to the A. palmata biotope, we have collected spectra of at least seven other coral biotopes that exist within the study area, each with different coral community composition, density of corals, relief, and size of corals. Coral spectral reflectance was then input into a radiative transfer model, CORALMOD (CM1), which is based on a leaf radiative transfer model. In CM1, input coral reflectance measurements produce modeled reflectance through an inversion at each visible wavelength to provide the absorption spectrum. Initially, we imposed a scattering baseline that is the same regardless of the coral condition and that coral is optically thick and no light is transmitted through coral. Here we will focus on methodology, experimental design, and initial findings of the in situ spectral measurements and preliminary output from the radiative transfer model.

Guild, Liane

Hyperspectral Data Processing: an Opportunity for End-To-End Processing

The evolution and improvements in hyperspectral instrumentation are being matched by information technology improvements in science data processing and analysis. Research has improved techniques in both onboard and ground-based processing to support other high data volume instruments. Algorithms and hardware have evolved, permitting faster access to the observations. Cloud computing is taking the algorithms to the data. Technologies are being specifically designed to address high volume data sets and are an investment in the improvement of hyperspectral data processing.

science data processing

Mapping Ungulate Habitats in Yellowstone National Park with Airborne Hyperspectral Data

Mapping vegetation habitats of ungulates (e.g., bison, elk, and deer) is critical to the development of efficient wildlife management and monitoring practices in Yellowstone National Park. Image endmembers were chosen using the ENVI minimum noise fraction, pixel purity index, N-dimensional visualizer approach. The spectral angle mapper algorithm was used to classify the image. This process was applied to low altitude AVIRIS and Probe-1 hyperspectral imagery of the Lamar River/Soda Butte Creek confluence to map several ungulate habitats (e.g., grasses, sedge, sage, aspen, willow, and cottonwood. The results are being compared to field measurements and large-scale color infrared aerial photography to assess mapping accuracy. The use of AVIRIS and Probe-1 data enabled the examination of hyperspectral data collected at different spatial and spectral resolutions.

Terrie, Gregory

Seasonal Correlations of SST, Water Vapor, and Convective Activity in Tropical Oceans: A New Hyperspectral Data Set for Climate Model Testing

The analysis of the response of the Earth Climate System to the seasonal changes of solar forcing in the tropical oceans using four years of the Atmospheric Infrared Sounder (AIRS) and Advanced Microwave Sounding Unit (AMSU) data between 2002 and 2006 gives new insight into amplitude and phase relationships between surface and tropospheric temperatures, humidity, and convective activity. The intensity of the convective activity is measured by counting deep convective clouds. The peaks of convective activity, temperature in the mid-troposphere, and water vapor in the 0 - 30 N and 0 - 30 S tropical ocean zonal means occur about two months after solstice, all leading the peak of the sea surface temperature by several weeks. Phase is key to the evaluation of feedback. The evaluation of climate models in terms of zonal and annual means and annual mean deviations from zonal means can now be supplemented by evaluating the phase of key atmospheric and surface parameters relative to solstice. The ability of climate models to reproduce the statistical flavor of the observed amplitudes and relative phases for broad zonal means should lead to increased confidence in the realism of their water vapor and cloud feedback algorithms. AIRS and AMSU were launched into a 705 km altitude polar sun-synchronous orbit on the EOS Aqua spacecraft on May 4, 2002, and have been in routine data gathering mode since September 2002.

Atmospheric Infrared Sounder

Retrieval Lesson Learned from NAST-I Hyperspectral Data

The retrieval lesson learned is important to many current and future hyperspectral remote sensors. Validated retrieval algorithms demonstrate the advancement of hyperspectral remote sensing capabilities to be achieved with current and future satellite instruments.

Zhou, Daniel K.

Multiple Spectral-Spatial Classification Approach for Hyperspectral Data

A .new multiple classifier approach for spectral-spatial classification of hyperspectral images is proposed. Several classifiers are used independently to classify an image. For every pixel, if all the classifiers have assigned this pixel to the same class, the pixel is kept as a marker, i.e., a seed of the spatial region, with the corresponding class label. We propose to use spectral-spatial classifiers at the preliminary step of the marker selection procedure, each of them combining the results of a pixel-wise classification and a segmentation map. Different segmentation methods based on dissimilar principles lead to different classification results. Furthermore, a minimum spanning forest is built, where each tree is rooted on a classification -driven marker and forms a region in the spectral -spatial classification: map. Experimental results are presented for two hyperspectral airborne images. The proposed method significantly improves classification accuracies, when compared to previously proposed classification techniques.

Tarabalka, Yuliya

Evaluation of Algorithms for Compressing Hyperspectral Data

With EO-1 Hyperion in orbit NASA is showing their continued commitment to hyperspectral imaging (HSI). As HSI sensor technology continues to mature, the ever-increasing amounts of sensor data generated will result in a need for more cost effective communication and data handling systems. Lockheed Martin, with considerable experience in spacecraft design and developing special purpose onboard processors, has teamed with Applied Signal & Image Technology (ASIT), who has an extensive heritage in HSI spectral compression and Mapping Science (MSI) for JPEG 2000 spatial compression expertise, to develop a real-time and intelligent onboard processing (OBP) system to reduce HSI sensor downlink requirements. Our goal is to reduce the downlink requirement by a factor > 100, while retaining the necessary spectral and spatial fidelity of the sensor data needed to satisfy the many science, military, and intelligence goals of these systems. Our compression algorithms leverage commercial-off-the-shelf (COTS) spectral and spatial exploitation algorithms. We are currently in the process of evaluating these compression algorithms using statistical analysis and NASA scientists. We are also developing special purpose processors for executing these algorithms onboard a spacecraft.

Cook, Sid

Onboard Science and Applications Algorithm for Hyperspectral Data Reduction

An onboard processing mission concept is under development for a possible Direct Broadcast capability for the HyspIRI mission, a Hyperspectral remote sensing mission under consideration for launch in the next decade. The concept would intelligently spectrally and spatially subsample the data as well as generate science products onboard to enable return of key rapid response science and applications information despite limited downlink bandwidth. This rapid data delivery concept focuses on wildfires and volcanoes as primary applications, but also has applications to vegetation, coastal flooding, dust, and snow/ice applications. Operationally, the HyspIRI team would define a set of spatial regions of interest where specific algorithms would be executed. For example, known coastal areas would have certain products or bands downlinked, ocean areas might have other bands downlinked, and during fire seasons other areas would be processed for active fire detections. Ground operations would automatically generate the mission plans specifying the highest priority tasks executable within onboard computation, setup, and data downlink constraints. The spectral bands of the TIR (thermal infrared) instrument can accurately detect the thermal signature of fires and send down alerts, as well as the thermal and VSWIR (visible to short-wave infrared) data corresponding to the active fires. Active volcanism also produces a distinctive thermal signature that can be detected onboard to enable spatial subsampling. Onboard algorithms and ground-based algorithms suitable for onboard deployment are mature. On HyspIRI, the algorithm would perform a table-driven temperature inversion from several spectral TIR bands, and then trigger downlink of the entire spectrum for each of the hot pixels identified. Ocean and coastal applications include sea surface temperature (using a small spectral subset of TIR data, but requiring considerable ancillary data), and ocean color applications to track biological activity such as harmful algal blooms. Measuring surface water extent to track flooding is another rapid response product leveraging VSWIR spectral information.

Chien, Steve A.

Discrimination of Hydrovolcanic Tephras from Volcanic and Non-Volcanic Backgrounds in Hyperspectral Data of Pavant Butte and Tabernacle Hill, Utah: Relevance for Mars

Water-magma, or ice-magma, interactions have long been theorized as an important process in the Martian geologic record [1-3]. The ability to unambiguously recognize tephra deposits and volcanic edifices produced by H2O-magma interactions is important for understanding the geologic history of Mars and for understanding the genesis of the major components of the Martian surface layer. Recognizing volcanic edifices produced by H2Omagma interactions on the basis of morphology alone is difficult.can be definitively identified as such. One means of providing supporting evidence for the identification of hydrovolcanic landforms and tephra deposits is through spectroscopy. Tephras produced by hydrovolcanic activity range from fresh basaltic glass (sideromelane) to glasses that have been completely altered to palagonite. A study of the visible through short-wave infrared (Vis-IR) reflectance of tephras composing tuff rings and tuff cones showed that the different stages of this alteration sequence have recognizable reflectance signatures [6,7]. However, the ability to recognize these different types of tephras against volcanic and nonvolcanic background materials has yet to be fully demonstrated. In this research, hyperspectral Vis-IR data over volcanic and hydrovolcanic terrains in the Black Rock Desert of Utah were analyzed in order to determine the separability of the component materials from volcanic and non-volcanic backgrounds.

Farrand, W. H.

Dimension Reduction of Hyperspectral Data on Beowulf Clusters

Traditional remote sensing instruments are multispectral, where observations are collected at a few different spectral bands. Recently, many hyperspectral instruments, that can collect observations at hundreds of bands, have been operation. Furthermore, there have been ongoing research efforts on ultraspectral instruments that can produce observations at thousands of spectral bands. While these remote sensing technology developments hold a great promise for new findings in the area of Earth and space science, they present many challenges. These include the need for faster processing of such increased data volumes, and methods for data reduction. Dimension Reduction is a spectral transformation, which is used widely in remote sensing, is the Principal Components Analysis (PCA). In light of the growing number of spectral channels of modern instruments, the paper reports on the development of a parallel PCA and its implementation on two Beowulf cluster configurations, on with fast Ethernet switch and the other is with a Myrinet interconnection.

El-Ghazawi, Tarek

Hyperspectral data analysis procedures with reduced sensitivity to noise

Multispectral sensor systems have become steadily improved over the years in their ability to deliver increased spectral detail. With the advent of hyperspectral sensors, including imaging spectrometers, this technology is in the process of taking a large leap forward, thus providing the possibility of enabling delivery of much more detailed information. However, this direction of development has drawn even more attention to the matter of noise and other deleterious effects in the data, because reducing the fundamental limitations of spectral detail on information collection raises the limitations presented by noise to even greater importance. Much current effort in remote sensing research is thus being devoted to adjusting the data to mitigate the effects of noise and other deleterious effects. A parallel approach to the problem is to look for analysis approaches and procedures which have reduced sensitivity to such effects. We discuss some of the fundamental principles which define analysis algorithm characteristics providing such reduced sensitivity. One such analysis procedure including an example analysis of a data set is described, illustrating this effect.

Landgrebe, David A.

Three Years of Hyperspectral Data from AIRS: What Have We Learned

This viewgraph presentation reviews the Atmospheric Infrared Sounder (AIRS) that is on the Aqua satellite. The expectations that were had about AIRS have been exceeded. The lessons learned from AIRS are reviewed. These lessons are used to enhance the next generation hyperspectral sounder, being planned.

accuracy

Determination of Chlorophyll Content in Selected Grass Communities of Krkonoše Mts. Tundra Based on Laboratory Spectroscopy and Aerial Hyperspectral Data

The study focuses on the determination of chlorophyll content in four prevailing grasses in the relict arctic-alpine tundra located in the Krkonoše Mountains National Park, Czech Republic. We compared two methods for determination of leaf chlorophyll content (LCC) – spectrophotometric determination in the laboratory, and the LCC assessed by fluorescence portable chlorophyll meter CCM-300. Relationships were established between the LCCs and vegetation indices calculated from leaf spectra acquired with contact probe coupled with an ASD FieldSpec4 Wide-Res spectroradiometer. Canopy chlorophyll contents (CCC) were computed from the LCCs and green leaf area index (LAI), and modelled based on the field spectra measured by the spectroradiometer and the hyperspectral images acquired by Headwall Nano-Hyperspec® mounted on the DJI Matrice 600 Pro drone. The calculations are performed on datasets acquired in June, July and August 2020 together and separately for species and months. In general, the correlations based on June datasets work the best at both levels: median R 2 for all indices was 0.52 for all species together at leaf level and median R 2 = 0.47 at the canopy level (vegetation indices computed from field spectra). Canopy chlorophyll content map was created based on the results of stepwise multiple linear regression. The R 2 was 0.42 when using four wavelengths from the red and red edge spectral region. We attribute the weak model performance to a combination of several factors: leaf structure may bias LCC from laboratory measurements, effects of LAI variability on CCC, and the sampling design, probably not covering the whole phenology equally for all studied species.

L. Cervena

Hyperspectral data analysis for estimation of foliar biochemical content along the Oregon transect

The NASA Oregon Transect Ecosystem Research (OTTER) project completed a data acquisition phase. Data were acquired with several airborne imaging spectrometers. Included were the Airborne Visible and Infrared Imaging Spectrometer (AVIRIS) aboard the ER-2, the Advanced Solidstate Array Spectrometer (ASAS) aboard the C-130, and the Fluorescence Line Imager (FLI) and Compact Airborne Spectrographic Imager (CASI), both aboard light aircraft. In addition, Spectron visible and near-infrared data were acquired in transects across study areas from a low-altitude ultralight craft. Sunphotometer data were taken approximately coincident with each overflight for atmospheric correction of the aircraft data.

Johnson, Lee F.

On the use of stochastic process-based methods for the analysis of hyperspectral data

Further development in remote sensing technology requires refinement of information system design aspects, i.e., the ability to specify precisely the data to collect and the means to extract increasing amounts of information from the increasingly rich and complex data stream created. One of the principal directions of advance is that data from much larger numbers of spectral bands can be collected, but with significantly increased signal-to-noise ratio. The theory of stochastic or random processes may be applied to the modeling of second-order variations. A multispectral data set with a large number of spectral bands is analyzed using standard pattern recognition techniques. The data were classified using first a single spectral feature, then two, and continuing on with greater and greater numbers of features. Three different classification schemes are used: a standard maximum likelihood Gaussian scheme; the same approach with the mean values of all classes adjusted to be the same; and the use of a minimum distance to means scheme such that mean differences are used.

Landgrebe, David A.