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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 37 records · Page 2
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Image processing tools for petabyte-scale light sheet microscopy data

Light sheet microscopy is a powerful technique for high-speed three-dimensional imaging of subcellular dynamics and large biological specimens. However, it often generates datasets ranging from hundreds of gigabytes to petabytes in size for a single experiment. Conventional computational tools process such images far slower than the time to acquire them and often fail outright due to memory limitations. To address these challenges, we present PetaKit5D, a scalable software solution for efficient petabyte-scale light sheet image processing. This software incorporates a suite of commonly used processing tools that are optimized for memory and performance. Notable advancements include rapid image readers and writers, fast and memory-efficient geometric transformations, high-performance Richardson–Lucy deconvolution and scalable Zarr-based stitching. These features outperform state-of-the-art methods by over one order of magnitude, enabling the processing of petabyte-scale image data at the full teravoxel rates of modern imaging cameras. The software opens new avenues for biological discoveries through large-scale imaging experiments.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Scalable molecular dynamics on CPU and GPU architectures with NAMD

NAMD is a molecular dynamics program designed for high-performance simulations of very large biological objects on CPU- and GPU-based architectures. NAMD offers scalable performance on petascale parallel supercomputers consisting of hundreds of thousands of cores, as well as on inexpensive commodity clusters commonly found in academic environments. It is written in C++ and leans on Charm++ parallel objects for optimal performance on low-latency architectures. NAMD is a versatile, multipurpose code that gathers state-of-the-art algorithms to carry out simulations in apt thermodynamic ensembles, using the widely popular CHARMM, AMBER, OPLS, and GROMOS biomolecular force fields. Here, we review the main features of NAMD that allow both equilibrium and enhanced-sampling molecular dynamics simulations with numerical efficiency. We describe the underlying concepts utilized by NAMD and their implementation, most notably for handling long-range electrostatics; controlling the temperature, pressure, and pH; applying external potentials on tailored grids; leveraging massively parallel resources in multiple-copy simulations; and hybrid quantum-mechanical/molecular-mechanical descriptions. We detail the variety of options offered by NAMD for enhanced-sampling simulations aimed at determining free-energy differences of either alchemical or geometrical transformations and outline their applicability to specific problems. Last, we discuss the roadmap for the development of NAMD and our current efforts toward achieving optimal performance on GPU-based architectures, for pushing back the limitations that have prevented biologically realistic billion-atom objects to be fruitfully simulated, and for making large-scale simulations less expensive and easier to set up, run, and analyze. NAMD is distributed free of charge with its source code at www.ks.uiuc.edu.

high-performance computing↗
DOE OSTI2020

Monolithic mtesla-level magnetic induction by self-rolled-up membrane technology

Monolithic strong magnetic induction at the mtesla to tesla level provides essential functionalities to physical, chemical, and medical systems. Current design options are constrained by existing capabilities in three-dimensional (3D) structure construction, current handling, and magnetic material integration. We report here geometric transformation of large-area and relatively thick (~100 to 250 nm) 2D nanomembranes into multiturn 3D air-core microtubes by a vapor-phase self-rolled-up membrane (S-RuM) nanotechnology, combined with postrolling integration of ferrofluid magnetic materials by capillary force. Hundreds of S-RuM power inductors on sapphire are designed and tested, with maximum operating frequency exceeding 500 MHz. An inductance of 1.24 μH at 10 kHz has been achieved for a single microtube inductor, with corresponding areal and volumetric inductance densities of 3 μH/mm 2 and 23 μH/mm 3 , respectively. The simulated intensity of the magnetic induction reaches tens of mtesla in fabricated devices at 10 MHz.

42 ENGINEERING↗
DOE OSTI2021

Attribute-Guided Adversarial Training for Robustness to Natural Perturbations

We report while existing work in robust deep learning has focused on small pixel-level norm-based perturbations, this may not account for perturbations encountered in several real world settings. In many such cases although test data might not be available, broad specifications about the types of perturbations (such as an unknown degree of rotation) may be known. We consider a setup where robustness is expected over an unseen test domain that is not i.i.d. but deviates from the training domain. While this deviation may not be exactly known, its broad characterization is specified a priori, in terms of attributes. We propose an adversarial training approach which learns to generate new samples so as to maximize exposure of the classifier to the attributes-space, without having access to the data from the test domain. Our adversarial training solves a min-max optimization problem, with the inner maximization generating adversarial perturbations, and the outer minimization finding model parameters by optimizing the loss on adversarial perturbations generated from the inner maximization. We demonstrate the applicability of our approach on three types of naturally occurring perturbations --- object-related shifts, geometric transformations, and common image corruptions. Our approach enables deep neural networks to be robust against a wide range of naturally occurring perturbations. We demonstrate the usefulness of the proposed approach by showing the robustness gains of deep neural networks trained using our adversarial training on MNIST, CIFAR-10, and a new variant of the CLEVR dataset.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

An LES-based airborne Doppler lidar simulator and its application to wind profiling in inhomogeneous flow conditions

Wind profiling by Doppler lidar is common practice and highly useful in a wide range of applications. Airborne Doppler lidar can provide additional insights relative to ground-based systems by allowing for spatially distributed and targeted measurements. Providing a link between theory and measurement, a first large eddy simulation (LES)-based airborne Doppler lidar simulator (ADLS) has been developed. Simulated measurements are conducted based on LES wind fields, considering the coordinate and geometric transformations applicable to real-world measurements. The ADLS provides added value as the input truth used to create the measurements is known exactly, which is nearly impossible in real-world situations. Thus, valuable insight can be gained into measurement system characteristics as well as retrieval strategies. As an example application, airborne Doppler lidar wind profiling is investigated using the ADLS. For commonly used airborne velocity azimuth display (AVAD) techniques, flow homogeneity is assumed throughout the retrieval volume, a condition which is violated in turbulent boundary layer flow. Assuming an ideal measurement system, the ADLS allows to isolate and evaluate the error in wind profiling which occurs due to the violation of the flow homogeneity assumption. Overall, the ADLS demonstrates that wind profiling is possible in turbulent wind field conditions with reasonable errors (root mean squared error of 0.36 m s –1 for wind speed when using a commonly used system setup and retrieval strategy for the conditions investigated). Nevertheless, flow inhomogeneity, e.g., due to boundary layer turbulence, can cause an important contribution to wind profiling error and is non-negligible. Results suggest that airborne Doppler lidar wind profiling at low wind speeds (<5 m s –1 ) can be biased, if conducted in regions of inhomogeneous flow conditions.

17 WIND ENERGY↗
NASA NTRS1972

The precision-processing subsystem for the Earth Resources Technology Satellite.

Description of the precision processor, a subsystem in the image-processing system for the Earth Resources Technology Satellite (ERTS). This processor is a special-purpose image-measurement and printing system, designed to process user-selected bulk images to produce 1:1,000,000-scale film outputs and digital image data, presented in a Universal-Transverse-Mercator (UTM) projection. The system will remove geometric and radiometric errors introduced by the ERTS multispectral sensors and by the bulk-processor electron-beam recorder. The geometric transformations required for each input scene are determined by resection computations based on reseau measurements and image comparisons with a special ground-control base contained within the system; the images are then printed and digitized by electronic image-transfer techniques.

Chapelle, W. E.↗
NASA NTRS1973

Machine processing of remotely sensed data; Proceedings of the Conference, Purdue University, West Lafayette, Ind., October 16-18, 1973

Topics discussed include the management and processing of earth resources information, special-purpose processors for the machine processing of remotely sensed data, digital image registration by a mathematical programming technique, the use of remote-sensor data in land classification (in particular, the use of ERTS-1 multispectral scanning data), the use of remote-sensor data in geometrical transformations and mapping, earth resource measurement with the aid of ERTS-1 multispectral scanning data, the use of remote-sensor data in the classification of turbidity levels in coastal zones and in the identification of ecological anomalies, the problem of feature selection and the classification of objects in multispectral images, the estimation of proportions of certain categories of objects, and a number of special systems and techniques. Individual items are announced in this issue.

Source record↗
NASA NTRS1977

Computer image processing - The Viking experience

Computer processing of digital imagery from the Viking mission to Mars is discussed, with attention given to subjective enhancement and quantitative processing. Contrast stretching and high-pass filtering techniques of subjective enhancement are described; algorithms developed to determine optimal stretch and filtering parameters are also mentioned. In addition, geometric transformations to rectify the distortion of shapes in the field of view and to alter the apparent viewpoint of the image are considered. Perhaps the most difficult problem in quantitative processing of Viking imagery was the production of accurate color representations of Orbiter and Lander camera images.

Green, W. B.↗
NASA NTRS1977

Viking image processing

The paper discusses the camera systems capable of recording black and white and color imagery developed for the Viking Lander imaging experiment. Each Viking Lander image consisted of a matrix of numbers with 512 rows and an arbitrary number of columns up to a maximum of about 9,000. Various techniques were used in the processing of the Viking Lander images, including: (1) digital geometric transformation, (2) the processing of stereo imagery to produce three-dimensional terrain maps, and (3) computer mosaicking of distinct processed images. A series of Viking Lander images is included.

Green, W. B.↗
NASA NTRS1978

Applications of digital image processing techniques to problems of data registration and correlation

An overview is presented of the evolution of the computer configuration at JPL's Image Processing Laboratory (IPL). The development of techniques for the geometric transformation of digital imagery is discussed and consideration is given to automated and semiautomated image registration, and the registration of imaging and nonimaging data. The increasing complexity of image processing tasks at IPL is illustrated with examples of various applications from the planetary program and earth resources activities. It is noted that the registration of existing geocoded data bases with Landsat imagery will continue to be important if the Landsat data is to be of genuine use to the user community.

Green, W. B.↗
NASA NTRS1978

Digital techniques for processing Landsat imagery

An overview of the basic techniques used to process Landsat images with a digital computer, and the VICAR image processing software developed at JPL and available to users through the NASA sponsored COSMIC computer program distribution center is presented. Examples of subjective processing performed to improve the information display for the human observer, such as contrast enhancement, pseudocolor display and band rationing, and of quantitative processing using mathematical models, such as classification based on multispectral signatures of different areas within a given scene and geometric transformation of imagery into standard mapping projections are given. Examples are illustrated by Landsat scenes of the Andes mountains and Altyn-Tagh fault zone in China before and after contrast enhancement and classification of land use in Portland, Oregon. The VICAR image processing software system which consists of a language translator that simplifies execution of image processing programs and provides a general purpose format so that imagery from a variety of sources can be processed by the same basic set of general applications programs is described.

Green, W. B.↗
NASA NTRS1978

Computer quantitation of coronary angiograms

A computer technique is being developed at the Jet Propulsion Laboratory to automate the measurement of coronary stenosis. A Vanguard 35mm film transport is optically coupled to a Spatial Data System vidicon/digitizer which in turn is controlled by a DEC PDP 11/55 computer. Programs have been developed to track the edges of the arterial shadow, to locate normal and atherosclerotic vessel sections and to measure percent stenosis. Multiple frame analysis techniques are being investigated that involve on the one hand, averaging stenosis measurements from adjacent frames, and on the other hand, averaging adjacent frame images directly and then measuring stenosis from the averaged image. For the latter case, geometric transformations are used to force registration of vessel images whose spatial orientation changes.

Ledbetter, D. C.↗
NASA NTRS1979

Logarithmic spiral grids for image processing

A picture digitization grid based on logarithmic spirals rather than Cartesian coordinates is presented. Expressing this curvilinear grid as a conformal exponential mapping reveals useful image processing properties. The mapping induces a computational simplification that suggests parallel architectures in which most geometric transformations are effected by data shifting in memory rather than arithmetic on coordinates. These include fast, parallel noise-free rotation, scaling, and some projective transformations of pixel defined images. Conformality of the mapping preserves local picture-processing operations such as edge detection.

Weiman, C. F. R.↗
NASA NTRS1982

Inter-image matching

Interimage matching is the process of determining the geometric transformation required to conform spatially one image to another. In principle, the parameters of that transformation are varied until some measure of some difference between the two images is minimized or some measure of sameness (e.g., cross-correlation) is maximized. The number of such parameters to vary is faily large (six for merely an affine transformation), and it is customary to attempt an a priori transformation reducing the complexity of the residual transformation or subdivide the image into small enough match zones (control points or patches) that a simple transformation (e.g., pure translation) is applicable, yet large enough to facilitate matching. In the latter case, a complex mapping function is fit to the results (e.g., translation offsets) in all the patches. The methods reviewed have all chosen one or both of the above options, ranging from a priori along-line correction for line-dependent effects (the high-frequency correction) to a full sensor-to-geobase transformation with subsequent subdivision into a grid of match points.

Wolfe, R. H., Jr.↗
NASA NTRS1984

LANDSAT-D investigations in snow hydrology

Thematic mapper radiometric characteristics, snow/cloud reflectance, and atmospheric correction are discussed with application to determining the spectral albedo of snow. The geometric characterics of TM and digital elevation data are examined. The geometric transformations and resampling required to coregister these data are discussed.

Dozier, J.↗
NASA NTRS1984

Registratiom of TM data to digital elevation models

Several problems arise when attempting to register LANDSAT thematic mapper data to U.S. B Geological Survey digital elevation models (DEMs). The TM data are currently available only in a rotated variant of the Space Oblique Mercator (SOM) map projection. Geometric transforms are thus; required to access TM data in the geodetic coordinates used by the DEMs. Due to positional errors in the TM data, these transforms require some sort of external control. The spatial resolution of TM data exceeds that of the most commonly DEM data. Oversampling DEM data to TM resolution introduces systematic noise. Common terrain processing algorithms (e.g., close computation) compound this problem by acting as high-pass filters.

Source record↗
NASA NTRS1984

Design and operation of a deployable truss structure

A concept for the one dimensional deployable truss structure is presented. The deployed configuration of the structure consists of the repetition of a longitudinal octahedral truss module. The principal mechanical feature of the truss is that the lateral members comprising the lateral triangular truss are telescoping beams. Contracting of the lateral members results in the deployment of the truss structure. The geometric transformation of this truss of variable geometry is presented. Both simultaneous and sequential modes of transformation are possible. The validity of the transformation applied to the deployment is verified through design of a conceptual model.

Miura, K.↗
NASA NTRS1984

The APL image processing laboratory

The present and proposed capabilities of the Central Image Processing Laboratory, which provides a powerful resource for the advancement of programs in missile technology, space science, oceanography, and biomedical image analysis, are discussed. The use of image digitizing, digital image processing, and digital image output permits a variety of functional capabilities, including: enhancement, pseudocolor, convolution, computer output microfilm, presentation graphics, animations, transforms, geometric corrections, and feature extractions. The hardware and software of the Image Processing Laboratory, consisting of digitizing and processing equipment, software packages, and display equipment, is described. Attention is given to applications for imaging systems, map geometric correction, raster movie display of Seasat ocean data, Seasat and Skylab scenes of Nantucket Island, Space Shuttle imaging radar, differential radiography, and a computerized tomographic scan of the brain.

Jenkins, J. O.↗