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At least 37 records · Page 2
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

15-minute Parker River gap-filled tide height and salinity data, PIE LTER, Plum Island Sound, MA (2014–2023), for ELM PFLOTRAN modeling

This dataset contains 15-minute tide height and salinity data from the Typha site along the Parker River, part of the Plum Island Ecosystems Long Term Ecological Research (PIE LTER) site in Plum Island Sound, Massachusetts (MA) 2014-2023. Tide height (in NAVD88) was compiled from measurements conducted at the mouth of Plum Island Sound and corrected for time lags. Gap-filling of missing periods were done by fitting tidal constituents to the time series. Salinity was measured (and is stored on ESS DIVE ) in 2022 and 2023 using HOBO U24-002 conductivity loggers. River discharge is the most important control on tidal river water salinity at the location (Vallino & Hopkinson, 1998). An artificial neural network was trained to predict river water salinity at the location using Parker River discharge (USGS station 01101000, Parker River at Byfield, MA) and gap-filled salinity observations from a long-term monitoring station ca. 3km downstream from the Typha site (LTER station ‘Middle Road’) as input variables to create continuous time series information. The data set was used in the spin up and simulations of a land surface model coupled to a biogeochemical reaction network (ELM PFLOTRAN) assessing impacts of hydrology and salinity input on methane fluxes in 2022 and 2023 (Sulman et al., 2024). Metadata files ELMPFLOTRAN_tide_salinity_dd.csv and ELMPFLOTRAN_tide_salinity_flmd.csv provide details on site location, data variables, and QA/QC methods .

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2019

Evaluation of MODIS and VIIRS Cloud-Gap-Filled Snow-Cover Products for Production of an Earth Science Data Record

MODerate resolution Imaging Spectroradiometer (MODIS) cryosphere products have been available since 2000 – following the 1999 launch of the Terra MODIS and the 2002 launch of the Aqua MODIS – and include global snow-cover extent (SCE) (swath, daily, and 8 d composites) at 500 m and ∼5 km spatial resolutions. These products are used extensively in hydrological modeling and climate studies. Reprocessing of the complete snow-cover data record, from Collection 5 (C5) to Collection 6 (C6) and Collection 6.1 (C6.1), has provided improvements in the MODIS product suite. Suomi National Polar-orbiting Partnership (S-NPP) Visible Infrared Imaging Radiometer Suite (VIIRS) Collection 1 (C1) snow-cover products at a 375 m spatial resolution have been available since 2011 and are currently being reprocessed for Collection 2 (C2). Both the MODIS C6.1 and the VIIRS C2 products will be available for download from the National Snow and Ice Data Center beginning in early 2020 with the complete time series available in 2020. To address the need for a cloud-reduced or cloud-free daily SCE product for both MODIS and VIIRS, a daily cloud-gap-filled (CGF) snow-cover algorithm was developed for MODIS C6.1 and VIIRS C2 processing. MOD10A1F (Terra) and MYD10A1F (Aqua) are daily, 500 m resolution CGF SCE map products from MODIS. VNP10A1F is the daily, 375 m resolution CGF SCE map product from VIIRS. These CGF products include quality-assurance data such as cloud-persistence statistics showing the age of the observation in each pixel. The objective of this paper is to introduce the new MODIS and VIIRS standard CGF daily SCE products and to provide a preliminary evaluation of uncertainties in the gap-filling methodology so that the products can be used as the basis for a moderate-resolution Earth science data record (ESDR) of SCE. Time series of the MODIS and VIIRS CGF products have been developed and evaluated at selected study sites in the US and southern Canada. Observed differences, although small, are largely attributed to cloud masking and differences in the time of day of image acquisition. A nearly 3-month time-series comparison of Terra MODIS and S-NPP VIIRS CGF snow-cover maps for a large study area covering all or parts of 11 states in the western US and part of southwestern Canada reveals excellent correspondence between the Terra MODIS and S-NPP VIIRS products, with a mean difference of 11 070 sqkm, which is ∼0.45 % of the study area. According to our preliminary validation of the Terra and Aqua MODIS CGF SCE products in the western US study area, we found higher accuracy of the Terra product compared with the Aqua product. The MODIS CGF SCE data record beginning in 2000 has been extended into the VIIRS era, which should last at least through the early 2030s.

Hall, Dorothy K.↗
DOE OSTI2022

A Comparison of Time-Series Gap-Filling Methods to Impute Solar Radiation Data: Preprint

Complete solar resource data sets play a critical role at every stage of solar energy projects; however, measured or modeled solar resource data come with significant uncertainties and usually suffer from several issues, including, but not limited to, data gaps and data quality issues. To mitigate these issues, an appropriate data imputation method should be implemented to build a complete and reliable temporal (and spatial) database. Motivated by this, in this study, we extensively compare the performance of eight different gap-filling methods by creating random and artificial data gaps in (i) hourly irradiance data for 1 year using a few locations of the National Solar Radiation Database (NSRDB) and (ii) 1-minute ground measurement data sets from the Surface Radiation Budget Network (SURFRAD) and the National Renewable Energy Laboratory (NREL) stations.

clearness index↗
DOE OSTI2021

A Comparison of Time Series Gap-Filling Methods to Impute Solar Radiation Data

Complete solar resource datasets play a critical role at every stage of solar project phases. However, measured or modeled solar resource data come with significant uncertainties and usually suffer from several issues, including but not limited to, data gaps, data quality issue, etc. In order to mitigate these issues an appropriate data imputation method should be implemented to build a complete and reliable temporal (and spatial) database. Being motivated by this, in this study we compare the performances of eight different gap filling methods extensively by creating random and artificial data gaps in (i) hourly irradiance data for one year using a few locations of the National Solar Radiation Database (NSRDB) and (ii) one-minute ground measurement dataset from Surface Radiation Budget Network (SURFRAD) stations.

clearness index↗
NASA NTRS2017

One-Dimensional Model for the Ultrasonic Response of Resin-Filled Gaps in Automated Tape Layup Composites

Automated tow placement has become a widely used fabrication technique, especially for large aerospace structures. Robotic heads lay down strips (tows) of preimpregnated fiber along programmed paths. The intention is to lay adjacent tows abutted to one another, but sometimes a gap is left between a tow and the previously-placed tow. If a tow gap exists, it fills with resin during cure, forming a fiber-free volume. In immersion ultrasonic pulse-echo measurements of a cured laminate, the gap can be observed to produce a noticeable echo, without significantly attenuating the back-wall reflection of the laminate. To understand this behavior, we considered a one dimensional model of the composite laminate, with a thin layer having the ultrasonic sound speed and density of neat resin, sandwiched between two layers of material having the sound speed and density of fiber-reinforced composite and surrounded on both sides by water. Neglecting attenuation, we considered the transmission and reflection coefficients of each interface, as well as that of the thin resin layer. Using the initial water/composite reflection as a reference, we computed the relative magnitude of the back surface/water reflection in the presence and in the absence of a resin-only layer, as well as the relative magnitude of the reflection arising from a thin resin layer in composite. While the one-dimensional model did not fully match the measurements, it did qualitatively explain the observed behavior.

Johnston, Patrick H.↗
NASA NTRS2004

Short Data Gap Filling Algorithm Prototype

This design note describes an algorithm to fill short data gaps encountered in pixel or flux time series using auto-regressive modeling techniques.

Chandrasekaran, Hema↗
DOE OSTI2020

Gap-filled water quality, Normalized Differenced Vegetation Index, total nitrogen (nitrate and ammonia) deposition, and land cover data trends for the Continental United States

The purpose of this work was to quantify trends in water quality, total nitrogen deposition, vegetation, and land-use trends for the Continental United States (CONUS). This dataset contains gap-filled daily and yearly in-stream carbon (C) and nitrogen (N) concentrations, discharge, and calculated exports from United States Geological Survey (USGS) National Water Information System (NWIS) stations across the United States of six different nitrogen parameters (Supplementary Table A1), one carbon parameter, and temperature (USGS, 2016, 2018) (https://waterdata.usgs.gov/nwis). The final water quality dataset is merged with the normalized differenced vegetation index (NDVI), total deposition (TDEP), landcover, and elevation datasets. All data are available at the CONUS scale as well as at the scale of hydrologic unit codes: (HUC) HUC8, HUC6, HUC4, and HUC2 watersheds. There are two zip files associated with this data package. I split the data into two equal sized zip files to comply with the data size limits, however the datasets are the same within each zip file. All data files can be read in directly into the R software.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRSDate not supplied

Training and Validation of Spectral Gap Filling Algorithm for Cpf-Ceres Intercalibration

The Climate Absolute Radiance and Refractivity Observatory (CLARREO) Pathfinder (CPF) mission is set to launch an SI-traceable reflective solar (RS) spectrometer aboard the International Space Station to measure Earth-reflected solar radiation with a radiometric uncertainty of 0.3% (k=1). The CPF intercalibration team has devised a cutting-edge methodology to accurately transfer the benchmark CPF calibration reference to the shortwave (SW) channel (200-5000 nm) of the Clouds and the Earth’s Radiant Energy System (CERES) instrument. The spectral range of CPF measurements spans from 350-2300 nm, while the CERES SW channel measures the Earth-reflected broadband solar radiances between 200 nm to 5 μm. To conduct precise CPF-CERES intercalibration analysis, the CPF-like spectral radiances outside the CPF spectral range need to be estimated to match the CERES SW spectral range. In response, the team has developed a fast algorithm that leverages spectrally redundant information within the CPF-measured portion through principal component analysis (PCA) and utilizes pre-established spectral correlation relationships among wavelengths to extend the CPF spectrum below 350 nm and above 2300 nm. Our results show that the algorithm achieves excellent accuracy in generating the missing energy in the UV and IR portions. The RMS error in the UV region is less than 4.5x10-3 W/m2/sr/nm, while in the IR region, it is smaller than 8x10-5 W/m2/sr/nm. Our methodology was validated using measured EMIT radiance data, which covers the spectral range from 0.381 μm to 2.493 μm. We employed EMIT radiances within the wavelength range of 0.43 – 2.25 μm to generate radiances for both the shorter wavelength range (0.381 – 0.43 μm) and longer wavelength range (2.25 – 2.493 μm). The generated radiances agree very well with the measured EMIT radiances. The standard deviation in the integrated broadband radiances was about 0.1%, and the bias is less than 0.004% for over 1.5 million EMIT measured samples. These statistics show that the spectral gap filling algorithm is robust and effective in substantially reducing the spectral difference-induced uncertainty in the CPF-CERES intercalibration samples.

Qiguang Yang↗
DOE OSTI2021

Evaluation of Time-Series Gap-Filling Methods for Solar Irradiance Applications

A complete solar resource data set is essential for any stage of a solar energy project - from feasibility studies to daily operations. But measured or modeled solar resource data are prone to data gaps and data quality issues. To mitigate these issues, a data imputation process should be implemented to obtain a complete and reliable temporal and spatial data series. This study focused on imputing temporal scales by applying random and artificial data gaps and then implementing eight imputation methods, including the Kalman filtering and smoothing and stine interpolations. These methods were implemented on 1-minute to half hourly irradiance data for 1 year using a few locations from the National Solar Radiation Database (NSRDB) and ground measurement data set. The results demonstrated that some of the simpler methods, such as the stine and linear interpolation methods, were the relatively best models based on the statistical metrics for imputing NSRDB and ground measurement data, respectively.

14 SOLAR ENERGY↗
DOE OSTI2024

Topologically trivial gap-filling in superconducting Fe(Se,Te) by one-dimensional defects

Abstract Structural distortions and imperfections are a crucial aspect of materials science, on the macroscopic scale providing strength, but also enhancing corrosion and reducing electrical and thermal conductivity. At the nanometre scale, multi-atom imperfections, such as atomic chains and crystalline domain walls have conversely been proposed as a route to topological superconductivity, whose most prominent characteristic is the emergence of Majorana Fermions that can be used for error-free quantum computing. Here, we shed more light on the nature of purported domain walls in Fe(Se,Te) that may host 1D dispersing Majorana modes. We show that the displacement shift of the atomic lattice at these line-defects results from sub-surface impurities that warp the topmost layer(s). Using the electric field between the tip and sample, we manage to reposition the sub-surface impurities, directly visualizing the displacement shift and the underlying defect-free lattice. These results, combined with observations of a completely different type of 1D defect where superconductivity remains fully gapped, highlight the topologically trivial nature of 1D defects in Fe(Se,Te).

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2021

Filling gaps in our understanding of belowground plant traits across the world: an introduction to a Virtual Issue

The belowground world is one of the final frontiers in terrestrial ecology. The tangling of plant roots with the surrounding soil below is a lifeline for the humble forbs and towering trees above, and roots play a key role in shaping ecosystem carbon, water and nutrient cycling (Bardgett et al., 2014). Ecologists have long sought to better understand the ecosystem-scale consequences of differing plant strategies, above- and belowground, by relating plant characteristics, or traits, to plant function (Grime, 1977; Pregitzer, 2002). While developing trait–function linkages is arguably more difficult for plant traits that are hidden belowground, root and rhizosphere ecologists continue to fan out across grasslands and forests with their shovels, isotopes, and specialized cameras, seeking a better understanding of the secret lives of roots. Over the years, New Phytologist has served as a virtual town square for scientists to discuss their hard-won observations on the interplay among belowground plant traits, microbial activity, and edaphic and environmental conditions from biomes around the world (Norby & Jackson, 2000; Pregitzer, 2002; Matamala & Stover, 2013; Norby & Iversen, 2017). In this Editorial we highlight the newest papers that update and add to our understanding of the role of root and rhizosphere traits in broader ecosystem processes. We focused on papers published in New Phytologist between 1 January 2019 and 31 December 2020 and extended this window to papers still in ‘early view’ up to the time of writing. Because of the overwhelming number of papers, we did not include those with a decidedly genomic focus or that served primarily as data syntheses, reviews, insights or commentaries.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Filling gaps in bacterial catabolic pathways with computation and high-throughput genetics

To discover novel catabolic enzymes and transporters, we combined high-throughput genetic data from 29 bacteria with an automated tool to find gaps in their catabolic pathways. GapMind for carbon sources automatically annotates the uptake and catabolism of 62 compounds in bacterial and archaeal genomes. For the compounds that are utilized by the 29 bacteria, we systematically examined the gaps in GapMind’s predicted pathways, and we used the mutant fitness data to find additional genes that were involved in their utilization. We identified novel pathways or enzymes for the utilization of glucosamine, citrulline, myo-inositol, lactose, and phenylacetate, and we annotated 299 diverged enzymes and transporters. We also curated 125 proteins from published reports. For the 29 bacteria with genetic data, GapMind finds high-confidence paths for 85% of utilized carbon sources. In diverse bacteria and archaea, 38% of utilized carbon sources have high-confidence paths, which was improved from 27% by incorporating the fitness-based annotations and our curation. GapMind for carbon sources is available as a web server ( http://papers.genomics.lbl.gov/carbon ) and takes just 30 seconds for the typical genome.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Finding the missing pieces: filling gaps that impede the translation of omics data into models

High-throughput omics technologies such as DNA sequencing have made the sequencing and computational assembly of microbial genomes recovered from the environment relatively routine. Computational inference of the protein products encoded by these genomes, and the associated biochemical functions, should enable the accurate prediction and modeling of microbial metabolism, organismal interactions, and ecosystem processes. However, a lack of scalable, probabilistic protein annotation tools limits the full potential of modeling for understanding the metabolism and biogeochemical cycles of microbial communities. Our approach to improve inference of protein annotations and metabolic models relied on learning from and emulating expert manual curation, leveraging software engineering and data science best practices to scale up the throughput and accuracy of annotations and metabolic model construction, building software to objectively evaluate different annotation strategies, and more closely linking the protein annotation and metabolic model inference process. Outcomes of this research include several improved or new computational tools, including DRAM (Distilled and Refined Annotation of Metabolism) for annotating microbial genomes with protein function and metabolic traits, CAMPER (Curated Annotations for Microbial Polyphenol Enzymes and Reactions) for annotating key polyphenol metabolisms, EC-Bench for comprehensive and unbiased benchmarking of annotation tools, and several apps available via the DOE Systems Biology Knowledgebase (KBase) for building genome-scale metabolic models. We demonstrate that these tools allow us to scalably annotate and understand thousands of genomes for microbial communities from a variety of systems and test cases, including rivers, thawing permafrost, and gut microbiomes. All of these computational tools are available as open-source software, with most broadly and easily accessible to the scientific community via KBase apps.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Fast rise breakdown in dielectric filled air gap for surge protection

Electric discharge across an air gap can be self-healing, providing a unique capability for repetitive, fast, high-voltage/current switching applications through arc conduction. Furthermore, incorporating dielectric granules in the air gap stimulates gas ionization, which lowers the breakdown voltage and narrows breakdown voltage distribution, thereby enabling engineered surge protection from multiple lightning strikes on aerospace vehicles and sensitive solid-state electronics in critical systems. This study investigates the effect of the permittivity of dielectric granules, gap filling, surface roughness, and metal work function on fast-rising, high-voltage breakdowns. In addition to the air gap width, these factors play important roles in gas ionization, field concentration, and initiation of electrical discharge and arcing. Therefore, they could potentially be used to control and narrow operational breakdown voltages for practical applications. Additionally, a modified Langevin–Debye model is developed to correlate the breakdown voltage and the permittivity of the dielectric filler. These investigations identify and highlight key underpinning mechanisms governing the gas discharge behavior across a dielectric filled air gap during voltage surge events.

42 ENGINEERING↗