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At least 37 records · Page 2
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Community size-spectra applied to recreational freshwater fisheries in Puerto Rican reservoirs

We developed a management framework based on community size-spectra (CSS) to establish targets to maximize desirable gamefish. We evaluated the influence of relative abundance of fish functional groups and watershed characteristics on the slope of the CSS or ecological efficiency. Both ecological efficiency and capacity were strongly influenced by relative abundance of fish functional groups and the degree of water level variation. Steeper slopes indicated overfished gamefish populations, whereas flatter slopes indicated systems dominated by undesirable invasive large-bodied low trophic position fish. We hypothesize that a desirable fishery would have a target range of CSS slopes that provides a deterministic community-based framework of predictable responses to environmental and food web changes that can be used to evaluate outcomes of management actions and a means to assess annual progress toward desirable conditions.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2026

From observation to replication: machine-learning-driven quantification and replication of fine-scale fish kinematics and behavior

Long-term quantification of fish behavior is essential for aquatic ecology, wildlife telemetry, and biomechanical device development. However, the observation duration required to obtain reliable behavioral and kinematic metrics remains unclear, and few tools exist to physically reproduce natural swimming motion for controlled experimentation. We address these challenges by developing a generalizable framework that models behavioral reliability (Spearman–Brown reliability index) as a function of observation duration and derives metric-specific monitoring thresholds. Using juvenile white sturgeon (Acipenser transmontanus) as a case study, we demonstrate that the minimum duration needed for reliable estimates varies substantially across kinematic features: to exceed a reliability of 0.8, total distance traveled requires 12 days, average curvature (mm?¹) 15 days, tail-beat frequency (Hz) 8 days, and average speed (body length/s) 17 days. We further bridge digital analysis and physical testing by developing a hardware-in-the-loop simulator that reconstructs machine-learning-derived swimming kinematics with high fidelity (correlation coefficient 0.98–0.99, RMSE 1.22–1.27 mm over a 5-minute segment). This platform enables realistic, repeatable motion stimuli for evaluating aquatic sensing technologies and bio-integrated devices under controlled conditions. Together, these contributions provide a scalable approach for designing long-term behavioral studies and a data-driven connection between ecological observation and robotic experimentation.

Hwang, SungJoo↗
DOE OSTI2022

Computational studies of hydraulic stressors for biological performance assessment in a hydropower plant with Kaplan turbine

We report Hydropower is currently one of the preeminent sources of renewable energy in the United States and globally. Hydropower plants also have detrimental impacts on the environment and ecology, including direct impacts to anadromous fish populations. The computational fluid dynamics (CFD) – based Biological Performance Assessment (BioPA) toolset is used for biological evaluations of fish passage through hydropower plants. The hydraulic environment of a hydropower plant was evaluated using CFD coupled with discrete element method (DEM) simulations. The predicted flow field and particle collision rate were validated against the experimental data in a water flume that has an idealized hydroturbine distributor geometry. Flow simulations were conducted to evaluate the hydraulic stressors, such as nadir pressure, fluid shear, runner collision, in a physical scale in a hydropower plant with Kaplan turbine which are responsible for injury and mortality of fish in a downstream migration. The cumulative exposure probability for the nadir pressure and collision with turbine runner was found to decrease with increased discharge rate. The lowest discharge rate shows the higher value of cumulative shear exposure probability. The maximum value of collision velocity increases with increased discharge rate. We offer the conclusions that will help in understanding various hydraulic stressors for biological assessment for environmentally sustainable hydroturbine passage.

13 HYDRO ENERGY↗
DOE OSTI2023

Predicting climate change impacts on poikilotherms using physiologically guided species abundance models

Poikilothermic animals comprise most species on Earth and are especially sensitive to changes in environmental temperatures. Species conservation in a changing climate relies upon predictions of species responses to future conditions, yet predicting species responses to climate change when temperatures exceed the bounds of observed data is fraught with challenges. We present a physiologically guided abundance (PGA) model that combines observations of species abundance and environmental conditions with laboratory-derived data on the physiological response of poikilotherms to temperature to predict species geographical distributions and abundance in response to climate change. The model incorporates uncertainty in laboratory-derived thermal response curves and provides estimates of thermal habitat suitability and extinction probability based on site-specific conditions. We show that temperature-driven changes in distributions, local extinction, and abundance of cold, cool, and warm-adapted species vary substantially when physiological information is incorporated. Notably, cold-adapted species were predicted by the PGA model to be extirpated in 61% of locations that they currently inhabit, while extirpation was never predicted by a correlative niche model. Failure to account for species-specific physiological constraints could lead to unrealistic predictions under a warming climate, including underestimates of local extirpation for cold-adapted species near the edges of their climate niche space and overoptimistic predictions of warm-adapted species.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Quantification of Off-Channel Inundated Habitat for Pacific Chinook Salmon ( Oncorhynchus tshawytscha ) along the Sacramento River, California, Using Remote Sensing Imagery

Off-channel areas are one of the most impacted aquatic habitats by humans globally, as extensive agricultural and urban development has limited them to roughly 10% of historical extent. This is also true for California’s Sacramento River Valley, where historically frequent widespread inundation has been reduced to a few off-channel water bodies along the mid-Sacramento River. This remaining shallow-water habitat provides crucial ecological benefits to multiple avian and fish species, but especially to floodplain-adapted species such as Chinook salmon (Oncorhynchus tshawytscha). Characterizing spatiotemporal off-channel dynamics, including inundation extent and residence time, is fundamental to better understanding the intrinsic value of such habitats and their potential to support recovery actions. Remote sensing techniques have been increasingly used to map surface water at regional and local scales, with improved resolutions. As such, this study maps off-channel inundation areas and describes their temporal dynamics by analyzing pixel-based time- series of multiple water indices, modified Normalized Difference Water Index (mNDWI) and the Automated Water Extraction Index (AWEI), generated from LandSat-8 and Sentinel-2 data between 2013–2021. Quantified off-channel area was similar with each water index and method used, but improved performance was associated with Sentinel-2 products and AWEI index to identify wetted areas under lower mainstem discharges. Results indicate an uneven distribution of off-channel habitat in the study area, with limited inundated areas in upstream reaches (<16% of total off-channel area for greater flows). In addition, much less habitat exists for flows under 400 m 3 /s, an important migration cue for endangered winter-run Chinook salmon, limiting juvenile access to areas with enhanced rearing conditions. Off-channel habitat residence times averaged between 7 and 16 days, primarily defined by the rate of receding flows, with rapid flow recession providing marginal off-channel habitat. This study shows reasonable performance of moderate resolution LandSat-8 and Sentinel-2 remote sensing imagery to characterize shallow-water inundated habitat in higher-order rivers, and as a method to inform restoration and native fish recovery efforts.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Where do the fish go in winter? A year of observing seasonal changes in Sequim Bay’s nearshore fish community

The use of environmental DNA (eDNA) sampling has been proposed as a complementary method to monitor fish species in marine environments. eDNA offers a non-invasive, cost-effective, and scalable way to detect aquatic species. It is appealing in environments where traditional methods are limited by access or visibility, especially in complex or sensitive habitats such as tidal channels and other marine energy sites. Before eDNA can be fully relied upon, we must verify its accuracy against established methods, like underwater photography. In this study, we collected eDNA samples and concurrently deployed a 360-degree camera near the floating dock of PNNL-Sequim in the tidal channel of Sequim Bay once a month for twelve consecutive months. During deployments, the camera remained on the seafloor for several hours overlapping slack tide and captured time-lapse photographs at ten second intervals. Counts and identifications of fish species observed in the images were used to calculate monthly Shannon diversity and Pielou evenness indices. These values were compared across the months using a Kruskal-Wallis test paired with a Conover-Iman post-hoc test. Cliff’s Delta was also calculated to quantify the effect size of the monthly differences. No fish were observed from December through April, likely due to seasonal behavior changes within the local fish community. Fish returned to the shoreline in May, with the greatest diversity and evenness recorded in September. These findings reveal substantial seasonal variation in nearshore fish communities. Many monthly comparisons were found to contain statistically significant differences within the diversity and evenness, and even more were found to have large effect sizes, signifying large ecological changes throughout the seasons. The absence of fish observed during the winter months is a key outcome of this survey that will hopefully be reflected in the eDNA results still to come, which would help validate the eDNA approach.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Operational and Performance Monitoring of East Tennessee Technology Park Ponds—2023 Results

Performance and operational monitoring are regulatory requirements associated with a non–time-critical removal action for three surface water bodies at the East Tennessee Technology Park (ETTP) in Oak Ridge, Tennessee: the K-1007-P1 Pond, the K-901-A Pond, and the K-720 Slough. This progress report summarizes the monitoring activities and results from fiscal year (FY) 2023. The goal of ecological enhancement of the K-1007-P1 and K-901-A Ponds is to reduce risk from polychlorinated biphenyl (PCB) contamination in fish to humans and wildlife. Lowering PCB concentrations in the water column and in the food that fish eat is expected to decrease PCB bioaccumulation in fish. Performance monitoring of the K-1007-P1 Pond focuses on annual PCB trends in water, clams, and fish. PCBs in fish also are sampled annually at the K-720 Slough. Operational monitoring ensures that ecological enhancement measures—including water quality, plant community, fish community, and wildlife actions—have been implemented as intended. Monitoring provides the information necessary to determine whether modifications are needed to attain the design end state (i.e., a heavily vegetated, clearwater pond dominated by sunfish with significantly diminished or at least downwardly trending PCB levels in fish). In FY 2023, fish removal efforts and vegetation planting primarily focused on the K-901-A Pond. These actions were implemented to help push the systems toward the desired end state. Descriptions of the various monitoring activities and preliminary 2023 results are provided in the following sections. An update on fish and plant management actions in FY 2023 is also included in this report. A summary of the more detailed information in this report will be presented as required in the upcoming Remediation Effectiveness Report.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Operational and Performance Monitoring of East Tennessee Technology Park Ponds—2025 Results

Performance and operational monitoring are regulatory requirements associated with a non–time-critical removal action for three surface water bodies at the East Tennessee Technology Park (ETTP) in Oak Ridge, Tennessee (Figure 1): the K-1007-P1 Pond, the K-901-A Pond, and the K-720 Slough. This progress report summarizes the monitoring activities and results from FY 2025. The goal of ecological enhancement of the K-1007-P1 and K-901-A Ponds is to reduce risk from polychlorinated biphenyl (PCB) contamination in fish to humans and wildlife. Lowering PCB concentrations in the water column and in the food that fish eat is expected to decrease PCB bioaccumulation in fish. Performance monitoring of the K-1007-P1 Pond focuses on annual PCB trends in water, clams, and fish. PCBs in fish also are sampled annually at the K-720 Slough. Operational monitoring ensures that ecological enhancement measures—including water quality, plant community, fish community, and wildlife actions—have been implemented as intended. Monitoring provides the information necessary to determine whether modifications are needed to attain the design end state (i.e., a heavily vegetated, clearwater pond dominated by sunfish with significantly diminished or at least downwardly trending PCB levels in fish). In FY 2025, fish removal efforts and vegetation planting primarily focused on the K-901-A Pond. These actions were implemented to help push the systems toward the desired end state. Descriptions of the various monitoring activities and preliminary 2025 results are provided in the following sections. An update on fish and plant management actions in FY 2025 is also included in this report. A summary of the more detailed information in this report will be presented as required in the upcoming Remediation Effectiveness Report.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Carnivore Survey Results for the Lawrence Livermore National Laboratory Site 300

ECORP Consulting, Inc. conducted a suite of carnivore surveys at the Lawrence Livermore National Laboratory’s (LLNL) Experimental Test Site (Site 300; project site). The project site is located east of the City of Livermore and southwest of the City of Tracy, Alameda and San Joaquin Counties, California. Mesocarnivore surveys were conducted on the project site in 2002 in preparation for the 2005 LLNL Site-Wide Environmental Impact Statement (SWEIS; Clark et al. 2003). The 2002 surveys included a combination of spotlighting, camera stations, and scat detection dog surveys. Additional scat detection dog surveys for San Joaquin kit fox (Vulpes macrotis mutica) were performed on Site 300 and the adjacent California Department of Fish and Wildlife’s (CDFW) Corral Hollow Ecological Reserve in 2018 and 2020 (Woollett 2019, 2021). A variety of species, including American badger (Taxidea taxus), coyote (Canis latrans), and bobcat (Lynx rufus), were detected during the previous surveys; however, no San Joaquin kit fox or mountain lion (Puma concolor) were detected. In support of the preparation of the new SWEIS, ECORP performed carnivore surveys to document the carnivores and other animals present on Site 300, with a focus on determining if the federally listed (endangered) and state listed (threatened) San Joaquin kit fox, CDFW Species of Special Concern (SSC) American badger, and/or mountain lion are present on Site 300. American badgers are known to occur on the property and there have been a few sporadic sightings of mountain lions, but San Joaquin kit fox have not been documented on Site 300. Although mountain lion were not detected during the 2002 survey, it has been added as a focal species for this survey because the southern and central coast evolutionary significant units of mountain lions were recently advanced by CDFW as a Candidate species for listing as “threatened” under the California Endangered Species Act.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Renewable energy and biological conservation in a changing world

Without a shift to renewable energy sources, climate change will have adverse effects on many terrestrial and aquatic species. On the other hand, replacing fossil fuels with renewable energy will have different effects on wildlife, some negative. To protect biota, while navigating the complexities surrounding the transition to renewable energy, will require sharing knowledge between energy experts and wildlife experts, as well as policy makers and resource managers. This special issue is intended to advance the conversation. Interactions between renewable energy facilities and fauna are complex. Each source of renewable energy has its own conservation concerns, and each presents its own set of opportunities for mitigation; Other concerns and mitigations are shared. In this overview, we review climate risks to biota, clarify the complementarities among renewables for the conservation community, and summarize research on energy effects on biota for the energy community. The papers invited for this special issue address fossil (coal, oil, natural gas) and renewable energy (terrestrial biomass energy, hydropower, marine-hydrokinetic energy, wind energy, solar energy) and affected fauna. Finally, we hope that the results of these studies, and others like them, set us on a path toward low-carbon energy systems that provide society with energy while protecting future biodiversity.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2021

Interdisciplinary Research Collaborative Trains Students to See Through Turbulent Systems

Despite the availability of interdisciplinary academic training programs, the practice of environmental science is often hampered by a lack of convergence across diverse disciplines. This gap is particularly salient in settings characterized by complex environmental issues, such as multiple-use coastal ecosystems. In response, we developed and implemented a training, research, and communication framework to provide undergraduates with an authentic operative experience working at the interface of interdisciplinary science and public decision-making within a case study of marine renewable energy. In our program, students gained hands-on experience with the scientific process and learned how to make information relevant, useful, and accessible to diverse stakeholder groups. Application of this framework demonstrates that the process of integrating data from biological (visual and acoustic monitoring of fish and marine mammals), physical (hydrodynamics), and social (local ecological knowledge) sciences can provide a more complete understanding of complex and turbulent ecosystems for better informed decision-making. We offer several recommendations to facilitate the adaptation and implementation of our interdisciplinary framework to diverse research contexts, with a focus on interdisciplinary training for the next generation of marine scientists.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

East Tennessee Technology Park Biological Monitoring and Abatement Program (2023 Fiscal Year Report)

In FY 2023, the East Tennessee Technology Park’s (ETTP’s) Biological Monitoring and Abatement Program (BMAP) consisted of two tasks that reflected different but complementary approaches to evaluating the effects of ETTP effluents on the ecological integrity of waters near ETTP. These tasks included (1) fish and clams bioaccumulation monitoring and (2) fish and benthic macroinvertebrate species richness and density monitoring. The sampling and analysis requirements for the ETTP BMAP in FY 2023 are outlined in the sampling and analysis plan (UCOR 2023).

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2024

East Tennessee Technology Park Biological Monitoring and Abatement Program - 2024 Fiscal Year Report

In FY 2024, the East Tennessee Technology Park’s (ETTP’s) Biological Monitoring and Abatement Program (BMAP) consisted of two tasks that reflect different but complementary approaches to evaluating the effects of ETTP effluents on the ecological integrity of waters near ETTP. These tasks included (1) fish and clam bioaccumulation monitoring and (2) fish and benthic macroinvertebrate species richness and density monitoring. The sampling and analysis requirements for the ETTP BMAP in FY 2024 are outlined in the sampling and analysis plan (UCOR 2023).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

East Tennessee Technology Park Biological Monitoring and Abatement Program—2025 Fiscal Year Report

In FY 2025, the East Tennessee Technology Park’s (ETTP’s) Biological Monitoring and Abatement Program (BMAP) consisted of two tasks that reflect different but complementary approaches to evaluating the effects of ETTP effluents on the ecological integrity of waters near ETTP. These tasks included (1) fish and clam bioaccumulation monitoring and (2) fish and benthic macroinvertebrate species richness and density monitoring. The sampling and analysis requirements for the ETTP BMAP in FY 2025 are outlined in the sampling and analysis plan (UCOR 2024). Major sampling sites for the BMAP are shown in Figure 1 and Figure 2.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Foot-and-Mouth Disease Virus Interserotypic Recombination in Superinfected Carrier Cattle

Viral recombination contributes to the emergence of novel strains with the potential for altered host range, transmissibility, virulence, and immune evasion. For foot-and-mouth disease virus (FMDV), cell culture experiments and phylogenetic analyses of field samples have demonstrated the occurrence of recombination. However, the frequency of recombination and associated virus–host interactions within an infected host have not been determined. We have previously reported the detection of interserotypic recombinant FMDVs in oropharyngeal fluid (OPF) samples of 42% (5/12) of heterologously superinfected FMDV carrier cattle. The present investigation consists of a detailed analysis of the virus populations in these samples including identification and characterization of additional interserotypic minority recombinants. In every animal in which recombination was detected, recombinant viruses were identified in the OPF at the earliest sampling point after superinfection. Some recombinants remained dominant until the end of the experiment, whereas others were outcompeted by parental strains. Genomic analysis of detected recombinants suggests host immune pressure as a major driver of recombinant emergence as all recombinants had capsid-coding regions derived from the superinfecting virus to which the animals did not have detectable antibodies at the time of infection. In vitro analysis of a plaque-purified recombinant virus demonstrated a growth rate comparable to its parental precursors, and measurement of its specific infectivity suggested that the recombinant virus incurred no penalty in packaging its new chimeric genome. These findings have important implications for the potential role of persistently infected carriers in FMDV ecology and the emergence of novel strains.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Hydropower Flexibility and Environmental Tradeoffs Analysis

The importance of hydropower increases as the power grid evolves with the higher variable renewable contribution. As conventional thermal power plants are retired, the importance of hydropower contribution increases to balance the variability of solar and wind generation. However, reservoir water resources are constrained by multiple constraints, and variability of water inflow to the reservoirs creates limitations to dam water releases for power grid needs. Coordinating multiple tools, including water resources, ecological, and technical and economic power grid modeling, informs dam water releases. The case study, the Columbia River Basin multipurpose reservoir project, is operated for hydropower production and many other purposes considering the aquatic habitat of the river basin. Specifically, the river basin fish population is a vital element for the tribal community of the river basin. We integrated a production cost model, a water resource model, and decades of tribal knowledge to analyze the fish-friendly way of operating Columbia hydropower scheduling and grid impacts. We measure power grid impacts for various water resources planning scenarios in terms of total system operating cost, system reliability indicators, changes in wind and solar generation and curtailments, local marginal prices, and revenue for hydropower producers. The study results inform reservoir operating rules decisions from hydropower power producers, system operators, other water users, tribes, environmentalists, and other stakeholders.

Columbia River↗
DOE OSTI2024

Linking Spatiotemporal Biological Data to Predict Harmful Algal Blooms

Cyanobacterial Harmful Algal Blooms (cHABs) have significant impacts on an affected region’s economy, ecology, and human health. The blooms can release toxins that kill fish and poison water for people and animals. The global adverse effects of cHABs are exacerbated by the consequences of climate change and increased pollution. Though the phenomena are well documented, scientists’ efforts to mitigate the damage are hampered by insufficient predictive models and incomplete granular knowledge of cHAB community structure. With a goal of leveraging bioinformatics and machine learning tools to better understand and predict cHABs, we are first exploring water sample data sets. Using nearly four thousand samples from the National Center for Biotechnology Information Sequence Read Archive (NCBI-SRA) across 16 years with latitude and longitude embedded in the metadata, we mapped the location of the samples onto a Lake Erie shape file. We combined information about location, date, and community taxa in the NCBI samples to discover factors that determine cHAB features. The data are separated into three distinct zones, with the majority pooled at the southwest end of the lake and occurring in 2017. The samples are rich in biological data; our next steps are to carry out whole genome sequence analysis and use the community profiles as part of our predictive machine learning model.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Bioeconomic benefits of managing fishing effort in a coexisting small- and large-scale fishery game

Abstract Fishing systems provide employment, income generation, poverty alleviation, and food security. The coexistence of small-scale fisheries (SSFs) and large-scale fisheries (LSFs) increases management complexity. Management actions have ecological and social implications that must be addressed carefully. We applied a bioeconomic game-theoretical model to the four-gear mullet fishery in southern Brazil—one industrial LSF (purse seine) and three artisanal SSFs (gillnet, beach seine, and drift net). All fishing gears target adult individuals during mullet's reproductive migration. First, we explored whether the current fishing efforts of all fishing gears could persist over time. Second, we investigated their interactions through a non-cooperative game. Finally, we studied the response of these interactions when fishing effort was restricted. We found that when the current fishing effort was maintained, the stock reduced to 26.4% of its capacity in 25 years. In addition, under non-cooperation, the traditional beach seine fleet exited the fishery. Interestingly, the constrained scenario had a coexistence output with increasing values for the final stock size and the per capita labour income, suggesting that limiting fishing effort can maintain all fishing gears in the fishery with social and ecological benefits.

de Azevedo, Eric Zettermann Dias (ORCID:0000000323↗