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This work reviews the advancements and prospects of liquid cell transmission electron microscopy (TEM) imaging and analysis methods in understanding the nucleation, growth, etching, and assembly dynamics of nanocrystals. The bonding of atoms into nanoscale crystallites produces materials with nonadditive properties unique to their size and geometry. The recent application of in situ liquid cell TEM to nanocrystal development has initiated a paradigm shift, (1) from trial-and-error synthesis to a mechanistic understanding of the “synthetic reactions” responsible for the emergence of crystallites from a disordered soup of reactive species (e.g., ions, atoms, molecules) and shape-defined growth or etching; and (2) from post-processing characterization of the nanocrystals’ superlattice assemblies to in situ imaging and mapping of the fundamental interactions and energy landscape governing their collective phase behaviors. Imaging nanocrystal formation and assembly processes on the single-particle level in solution immediately impacts many existing fields, including materials science, nanochemistry, colloidal science, biology, environmental science, electrochemistry, mineralization, soft condensed-matter physics, and device fabrication.
X-ray microscopy is an invaluable and powerful characterization tool applied in many scientific fields, such as materials science, biology, environmental science, and energy research. In recent years it has been driven by rapid developments of novel technologies and systems resulting in imaging experiments elucidating structural inhomogeneities and chemical reactions at the nanometer scale. To obtain high spatial resolution comprehensive chemical and structural information, an X-ray microscope must be equipped with adequate capabilities and allow for simultaneous acquisition of multiple datasets. In recent years, a number of X-ray microscopes have been designed, constructed, and commissioned at NSLS-II. Here we provide an overview of the microscopy instrumentation development program at NSLS-II and specifically focus on the multilayer Laue lens-based hard X-ray nanoprobe optimized for ~10 nm spatial resolution imaging, its current status, and future upgrades along with recently constructed Kirkpatrick-Baez based scanning microscope designed for ~100 nm spatial resolution experiments.
In August 2017, the U.S. National Nuclear Security Administration (NNSA) and the Israel Atomic Energy Commission (IAEC) launched a joint waste management program to evaluate the feasibility of siting a radioactive waste repository at intermediate depths in Israel. The bilateral collaboration involves three National Laboratories (LLNL, LANL, and Sandia), and the Nuclear Research Center, Negev, Geological Survey of Israel, and Ben Gurion University in Israel. This research is designed to assist with the evaluation of locations for an intermediate nuclear waste repository in Israel. This final report is a high-level summary of the results from the past three years by the team that worked on the WM-2: Radionuclide colloid-facilitated transport in fractured carbonate rock project for Science Area V, Environmental ISR: Subsurface Science and Waste Management. We have completed all of our tasks and met all of our milestones. MW-2 had three integrated tasks. Task 1 was laboratory experiments investigating colloid transport of radionuclides in natural fractured carbonate rocks from the Avdat formation, Israel. Task 2 was field experiments injecting radionuclide analogues pre-sorbed to clay colloids into fractured carbonate rock, and task 3 was numerical modeling of laboratory and field experimental results to assess the importance of colloids in the migration of relevant radionuclides. This task was incorporated into tasks 1 and 2. A 4 th task was initiated in FY20, to investigate the role of organics in facilitating radionuclide transport under the same conditions explored in task 1 due to the high organic content of the rocks being investigated for the immediate borehole locations. Preliminary results will be summarized here and the work will continue in FY21-23. The overall objective of this research is to evaluate the role of colloids (naturally occurring < 1 micron particles) in facilitating the transport of long-lived radionuclides from a nuclear waste repository situated in fractured carbonate rocks. Currently little data exists on radionuclide transport in carbonate rocks, but this is the main rock type available for siting a repository in Israel. Laboratory experiments were carried out in both Israel and the U.S., field experiments have taken place in Israel, and reactive transport modeling involved LLNL, LANL and Israel partner institutions. LLNL hosted a graduate student, Emily Tran, from Ben Gurion University in FY18 and FY19 and much of the work presented here was part of her PhD research.
The FY21 NNSA NA-22 Final Report represents the progress achieved over the past year (FY21) by the research team for Topic Area 3, Waste Management & Subsurface Science (WM3), and Topic Area 7, Radiation and Thermal Effects on Bituminous Rocks (WM7). WM3 and WM7 are part of Science Area V (Subsurface Science and Waste Management) in the NNSA-IAEC Science and Technology Working Group. The project was initiated four years ago (2017) with an MOU agreement between the U.S. National Nuclear Security Administration (NNSA) and the Israel Atomic Energy Commission (IAEC) to evaluate the feasibility of geological subsurface disposal of radioactive waste in Israel. The core WM3 and WM7 teams are comprised of scientists and engineers from Los Alamos National Laboratory, the Geologic Survey of Israel (GSI), and the Nuclear Research Center - Negev (NRCN), with a close collaboration to the teams from Sandia National Laboratory (SNL) and Lawrence Livermore Laboratory (LLNL)
Environmental DNA (eDNA) sampling of aquatic environments is a powerful new tool for resource managers to use in detecting the presence of rare and endangered species. The use of eDNA for species detection is quickly becoming an industry-standard methodology in environmental science, and the technology sector is moving quickly to create purpose-built tools for eDNA sampling. Smith-Root, Inc. pioneered the new technology of self-preserving eDNA filters that automatically preserve the DNA captured on filters by desiccating the internal filter membrane. This capability saves the sampling technician significant time in the field and drastically reduces the potential for sample contamination. One main constraint of this new technology, however, is the necessity of single-use plastics for eDNA sampling. Single-use designs are employed because sampling equipment must be devoid of potential contaminating DNA, and the time required to sterilize equipment is often not cost-effective for practitioners. Thus, this technology is creating a significant new source of plastic waste—something that eDNA practitioners, and society, would like to avoid. This project explores the use of alternative bio based polymers and composites as replacements for incumbent industrial standards for eDNA filtration systems, with an emphasis on ease of processing and biodegradable options. 8 candidate materials, 3 for the top filter housing and 5 for the bottom filter housing, were investigated to replace incumbent housing materials. Of the 8 candidates, 2 materials were identified for future investigation which met performance requirements, were bio-based and could potentially offer better disposal options like soil degradation or composting, features sought by the customers of these products. The top housing candidate, material 1, has comparable performance to the incumbent material and equally manufacturable. The bottom housing candidate, material 6, improved desiccation performance by 81% after 1 hour in comparison to the incumbent material, is 100% bio-based, compostable and can be sourced domestically throughout the U.S.A.
Noncovalent interactions (NCIs) are crucial for the formation and stability of host-guest complexes, which have wide-ranging implications across various fields, including biology, chemistry, materials science, pharmaceuticals, and environmental science. However, since NCIs are relatively weak and sensitive to bulk perturbation, direct and accurate measurement of their absolute strength has always been a significant challenge. This concept article aims to demonstrate the gas-phase electrospray ionization (ESI)-negative ion photoelectron spectroscopy (NIPES) as a direct and precise technique to measure the absolute interaction strength, probe nature of NCIs, and reveal the electronic structural information for host-guest complexes. Here, our recent studies in investigating various host-guest complexes that involve various types of NCIs such as anion–π, (di)hydrogen bonding, charge-separated ionic interactions, are overviewed. Finally, a summary and outlook are provided for this field.
The 7 th Summer Physics Camp for Young Women was successfully held in person in 2023 from June 5 th to 16 th at the New Mexico School for the Arts in Santa Fe, NM at Hilo Intermediate School in Hawaii. This year’s camp was dedicated to the topic of Energy Security and was made possible thanks to the strong collaboration of Los Alamos, Sandia and Hawaii teams and the logistical and financial support of Los Alamos and Sandia National Laboratories, New Mexico Consortium, SAGE- Moore Foundation, LANL Foundation, ACS, IEE, APS four corners, N3B, Hawaii Museum of Science and Technology, New Mexico School for the Arts (NMSA) and Tech Source. The camp mobilized more than 120 volunteers who made the camp a success. The camp is free of charge to the students and included free lunch and snacks for the busy brains to have plenty of energy, also included all materials needed for the hands-on activities (like drone building, crystal structure, solar panels, wind turbine fabrication, soldering, coding etc) and also a stipend for students who attended for the full two weeks and for two educators and two student mentors in NM. The camp offered 32 high school students from New Mexico and 8 from Hawaii a unique opportunity to explore science topics and meet a broad range of role model professionals across STEM fields including astrophysics, cybersecurity, Energy fields, space science, engineering, biophysics, environmental science, robotics, computer science, nuclear engineering, radiological science, physics and chemistry. With nearly 120 volunteers who came mainly from Los Alamos National Laboratory (66%) and Sandia national laboratories (18%), two funded educators from NM, Dr. Weldon Beauchamp and Dr. Ellee Cook, and two educators from Hilo, Dr. Pascale Creek Pinner and LeAnn Ragasa, the camp was educationally sound and extremely varied. The collaboration with school educators is critical for the goal of this camp to not only impact students' lives but also improve STEM education in NM and Hawaii. The ultimate goal of the camp is to increase higher education aspirations of students, empower them to consider careers in STEM and learn more about the opportunities available to them in our local colleges and DOE National Laboratories. In addition, the camp also hired 2 past students as student mentors, Megan Odom and Elisea Jackson, who currently attend NMSA and were students at the camp in 2022 when it was virtual. The in-person camp which aims at empowering under-represented minorities in STEM in our community received more than 52 applications this year from all over NM and 8 applications from Hawaii. Our selection criteria are based on diversity, equity and inclusion, and students for whom the camp can be a life-changing opportunity are given a chance to attend the camp. During COVID, the camp was held virtually and gave the opportunity to students from remote areas in NM and Hawaii to attend from their homes. This year, fantastic families supported students everyday even when home was in remote areas in NM like Lea county, Sandoval county, Bernalillo or Mora county. The organizers hope next year they can offer a residential option for students from remote areas.
Large compilations of heterogeneous environmental observations are increasingly available as public databases, allowing researchers to test hypotheses across datasets. Statistical complexities arise when analyzing compiled data due to unbalanced spatial sampling, variable environmental context, mixed measurement techniques, and other reasons. Hierarchical Bayesian modeling is increasingly used in environmental science to describe these complexities, however few studies explicitly compare the utility of hierarchical Bayesian models to simpler and more commonly applied methods. Here we demonstrate the utility of the hierarchical Bayesian approach with application to a large compiled environmental dataset consisting of 5,741 marine vertical organic carbon flux observations from 407 sampling locations spanning eight biomes across the global ocean. We fit a global scale Bayesian hierarchical model that describes the vertical profile of organic carbon flux with depth. Profile parameters within a particular biome are assumed to share a common deviation from the global mean profile. Individual station-level parameters are then modeled as deviations from the common biome-level profile. The hierarchical approach is shown to have several benefits over simpler and more common data aggregation methods. First, the hierarchical approach avoids statistical complexities introduced due to unbalanced sampling and allows for flexible incorporation of spatial heterogeneitites in model parameters. Second, the hierarchical approach uses the whole dataset simultaneously to fit the model parameters which shares information across datasets and reduces the uncertainty up to 95% in individual profiles. Third, the Bayesian approach incorporates prior scientific information about model parameters; for example, the non-negativity of chemical concentrations or mass-balance, which we apply here. We explicitly quantify each of these properties in turn. We emphasize the generality of the hierarchical Bayesian approach for diverse environmental applications and its increasing feasibility for large datasets due to recent developments in Markov Chain Monte Carlo algorithms and easy-to-use high-level software implementations.
FIU’s research under this project involves conducting basic and applied science to fill knowledge gaps and validate potential remediation technologies for contaminated soil and groundwater and the assessment of the fate and transport of contaminants in the environment. The aim of FIU’s research is to reduce the potential for contaminant mobility or toxicity in the surface and subsurface through the development and application of state-of-the-art scientific and environmental remediation technologies at the Hanford Site, Savannah River Site (SRS), and the Waste Isolation Pilot Plant (WIPP), which is the Nation’s only mined geologic repository for permanent disposal of transuranic waste. FIU collaborates with scientists from Pacific Northwest National Laboratory (PNNL), Savannah River National Laboratory (SRNL), Savannah River Ecology Laboratory (SREL), Los Alamos National Laboratory (LANL) and the DOE Carlsbad Field Office (CBFO) in order to plan and execute research that is synergistic with the work being conducted at the sites, and that supports the resolution of critical science and engineering needs which leads to a better understanding of the long-term behavior of subsurface contaminants. The knowledge gained through this research will be used to transform experimental and modeling innovations into practical applications deployed at the sites to support EM’s primary goal of expediting the closure of major contaminated soil and groundwater sites and waste units. Collaborative relationships between FIU and the national laboratories have provided large benefits over the years to FIU, the national laboratories, the DOE complex, and the DOE EM mission. By working closely with the national laboratories, FIU’s research is not only closely aligned with the cleanup mission priorities at the DOE sites, but complements and supports ongoing work at the national laboratories for screening of new remedial technologies. This coordination and leveraging of research efforts results in time- and cost-savings, and will accelerate progress of the DOE EM environmental restoration mission.
Physical samples are foundational entities for research across biological, Earth, and environmental sciences. Data generated from sample-based analyses are not only the basis of individual studies, but can also be integrated with other data to answer new and broader-scale questions. Ecosystem studies increasingly rely on multidisciplinary team-science to study climate and environmental changes. While there are widely adopted conventions within certain domains to describe sample data, these have gaps when applied in a multidisciplinary context. In this study, we reviewed existing practices for identifying, characterizing, and linking related environmental samples. We then tested practicalities of assigning persistent identifiers to samples, with standardized metadata, in a pilot field test involving eight United States Department of Energy projects. Participants collected a variety of sample types, with analyses conducted across multiple facilities. We address terminology gaps for multidisciplinary research and make recommendations for assigning identifiers and metadata that supports sample tracking, integration, and reuse. Furthermore, our goal is to provide a practical approach to sample management, geared towards ecosystem scientists who contribute and reuse sample data.
The purposes of the Lawrence Livermore National Laboratory Environmental Report 2021 are to record Lawrence Livermore National Laboratory’s (LLNL’s) compliance with environmental standards and requirements, describe LLNL’s environmental protection and remediation programs, and present the results of environmental monitoring at the two LLNL sites—the Livermore Site and Site 300. The report is prepared for the U.S. Department of Energy (DOE) by LLNL’s Environmental Functional Area. Submittal of the report satisfies requirements under DOE Order 231.1B, “Environment, Safety and Health Reporting,” and DOE Order 458.1, “Radiation Protection of the Public and Environment.” The report is distributed electronically and is available at https://saer.llnl.gov/, the website for the LLNL annual environmental report. Previous LLNL annual environmental reports beginning with 1994 are also on the website. Some references in the electronic report text are underlined, which indicates that they are clickable links. Clicking on one of these links will open the related document, data workbook, or website. Sampling location maps throughout this report were created using ArcGIS® software by Esri. The report begins with an executive summary, which provides the purpose of the report and an overview of LLNL’s compliance and monitoring results. The first three chapters provide background information: Chapter 1 is an overview of the location, meteorology, and hydrogeology of the two LLNL sites; Chapter 2 is a summary of LLNL’s compliance with environmental regulations; and Chapter 3 is a description of LLNL’s environmental programs with an emphasis on the Environmental Management System including pollution prevention. The majority of the report covers LLNL’s environmental monitoring programs and monitoring data for 2021: effluent and ambient air monitoring and dose assessment (Chapter 4); waters, including wastewater, storm water runoff, surface water, rain, and groundwater (Chapter 5); and terrestrial, including soil, sediment, vegetation, foodstuff, ambient radiation, and special status wildlife and plants (Chapter 6). The remaining two chapters discuss LLNL’s groundwater remediation program (Chapter 7), and quality assurance for the environmental monitoring programs (Chapter 8). Complete monitoring data, which are summarized in the body of the report, are provided in Appendix A. The report uses Système International units, consistent with the federal Metric Conversion Act of 1975 and Executive Order 12770, “Metric Usage in Federal Government Programs” (1991). For ease of comparison to environmental reports issued prior to 1991, dose values and many radiological measurements are given in both metric and U.S. customary units. A conversion table is provided in the glossary. The report is the responsibility of LLNL’s Environmental Functional Area. Monitoring data were obtained through the combined efforts of the Environmental Functional Area; Environmental Restoration Department; Physical and Life Sciences Environmental Monitoring Radiological Laboratory; and the Radiation Protection Functional Area.
The U.S. Department of Energy's Advanced Photn Source (APS) is one of the world’s most productive x-ray light source facilities. Each year, the APS provides high-brightness x-ray beams to a diverse community of more than 5,000 researchers in materials science, chemistry, condensed matter physics, the life and environmental sciences, and applied research. Researchers using the APS produce over 2,000 publications each year detailing impactful discoveries, and solve more vital biological protein structures than users of any other x-ray light source research facility. APS x-rays are ideally suited for explorations of materials and biological structures; elemental distribution; chemical, magnetic, electronic states; and a wide range of technologically important engineering systems from batteries to fuel injector sprays, all of which are the foundations of our nation’s economic, technological, and physical well-being. The APS occupies an 80-acre site on the Argonne campus, about 25 miles from downtown Chicago, Illinois. It shares a site with the Center for Nanoscale Materials and the Advanced Protein Characterization Facility.
The U.S. Department of Energy's Advanced Photon Source (APS) is one of the world’s most productive x-ray light source facilities. Each year, the APS provides high-brightness x-ray beams to a diverse community of more than 5,000 researchers in materials science, chemistry, condensed matter physics, the life and environmental sciences, and applied research. Researchers using the APS produce over 2,000 publications each year detailing impactful discoveries, and solve more vital biological protein structures than users of any other x-ray light source research facility. APS x-rays are ideally suited for explorations of materials and biological structures; elemental distribution; chemical, magnetic, electronic states; and a wide range of technologically important engineering systems from batteries to fuel injector sprays, all of which are the foundations of our nation’s economic, technological, and physical well-being. The APS occupies an 80-acre site on the Argonne campus, about 25 miles from downtown Chicago, Illinois. It shares a site with the Center for Nanoscale Materials and the Advanced Protein Characterization Facility.
This is the AmeriFlux version of the carbon flux data for the site US-xRN NEON Oak Ridge National Lab (ORNL). Site Description - Oak Ridge National Laboratory (ORNL) is located at the U.S. Department of Energy's Oak Ridge Reservation in Roane County, Tennessee. The ORNL reservation is situated within the borders of five parallel ridges and valleys to the north of the Clinch River that are part of the Ridge-and-Valley Appalachians physiographic province (Environmental Sciences Division n.d.). The NEON tower site and Walker Branch aquatic site at ORNL are located within the Walker Branch Watershed, a 100 ha area that has served as the site for long-term environmental studies by the Environmental Sciences Division at ORNL, NOAA, and many visiting university researchers.
This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-xRN NEON Oak Ridge National Lab (ORNL). This is the FLUXNET version of the carbon flux data for the site US-xRN NEON Oak Ridge National Lab (ORNL) produced by applying the standard ONEFlux (1F) software. Site Description - Oak Ridge National Laboratory (ORNL) is located at the U.S. Department of Energy's Oak Ridge Reservation in Roane County, Tennessee. The ORNL reservation is situated within the borders of five parallel ridges and valleys to the north of the Clinch River that are part of the Ridge-and-Valley Appalachians physiographic province (Environmental Sciences Division n.d.). The NEON tower site and Walker Branch aquatic site at ORNL are located within the Walker Branch Watershed, a 100 ha area that has served as the site for long-term environmental studies by the Environmental Sciences Division at ORNL, NOAA, and many visiting university researchers.
The proposed exploitation of the Jadar Valley lithium/borate deposit in Serbia, by the Rio Tinto Corporation, indicates that it would become large-scale processing of boron- and lithium-containing ore. It would be one of the world’s very first lithium mines in populated and agricultural area. The company claims that the envisioned mining will be in accordance with environmental protection requirements. The Jadar Valley deposits have been claimed to cover 90% of Europe’s current lithium needs. Yet, local opposition to the mining has arisen due to potential devastating impacts on groundwater, soil, water usage, biodiversity loss, and waste accumulation. Research drilling by the mining company has already produced environmental damage, with mine water containing high levels of boron leaking from exploratory wells and causing crops to dry out. Furthermore, our investigations reveal substantially elevated downstream concentrations of boron, arsenic, and lithium in nearby rivers as compared to upstream regions. Additionally, here we show that soil samples exhibit repeated breaches of remediation limit values with environmental consequences on both surface and underground waters. With the opening of the mine, problems will be multiplied by the tailings pond, mine wastewater, noise, air pollution, and light pollution, endangering the lives of numerous local communities and destroying their freshwater sources, agricultural land, livestock, and assets.
Progress in sequencing, microfluidics, and analysis strategies has revolutionized the granularity at which multicellular organisms can be studied. In particular, single-cell transcriptomics has led to fundamental new insights into animal biology, such as the discovery of new cell types and cell type-specific disease processes. However, the application of single-cell approaches to plants, fungi, algae, or bacteria (environmental organisms) has been far more limited, largely due to the challenges posed by polysaccharide walls surrounding these species’ cells. In this perspective, we discuss opportunities afforded by single-cell technologies for energy and environmental science and grand challenges that must be tackled to apply these approaches to plants, fungi and algae. We highlight the need to develop better and more comprehensive single-cell technologies, analysis and visualization tools, and tissue preparation methods. We advocate for the creation of a centralized, open-access database to house plant single-cell data. Finally, we consider how such efforts should balance the need for deep characterization of select model species while still capturing the diversity in the plant kingdom. Investments into the development of methods, their application to relevant species, and the creation of resources to support data dissemination will enable groundbreaking insights to propel energy and environmental science forward.