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At least 37 records · Page 2

Identification and denoising of radio signals from cosmic-ray air showers using convolutional neural networks

Radio pulses generated by cosmic-ray air showers can be used to reconstruct key properties like the energy and depth of the electromagnetic component of cosmic-ray air showers. Radio detection threshold, influenced by natural and anthropogenic radio background, can be reduced through various techniques. In this work, we demonstrate that convolutional neural networks (CNNs) are an effective way to lower the threshold. We developed two CNNs: a classifier to distinguish radio signal waveforms from background noise and a denoiser to clean contaminated radio signals. Following the training and testing phases, we applied the networks to air-shower data triggered by scintillation detectors of the prototype station for the enhancement of IceTop, IceCube’s surface array at the South Pole. Over a four-month period, we identified 554 cosmic-ray events in coincidence with IceTop, approximately five times more compared to a reference method based on a cut on the signal-to-noise ratio. Comparisons with IceTop measurements of the same air showers confirmed that the CNNs reliably identified cosmic-ray radio pulses and outperformed the reference method. Additionally, we find that CNNs reduce the false-positive rate of air-shower candidates and effectively denoise radio waveforms, thereby improving the accuracy of the power and arrival time reconstruction of radio pulses.

Abbasi, R↗

Sparse measurement medical CT reconstruction using multi-fused block matching denoising priors

A major challenge for medical X-ray CT imaging is reducing the number of X-ray projections to lower radiation dosage and reduce scan times without compromising image quality. However these under-determined inverse imaging problems rely on the formulation of an expressive prior model to constrain the solution space while remaining computationally tractable. Traditional analytical reconstruction methods like Filtered Back Projection (FBP) often fail with sparse measurements, producing artifacts due to their reliance on the Shannon-Nyquist Sampling Theorem. Consensus Equilibrium, which is a generalization of Plug and Play, is a recent advancement in Model-Based Iterative Reconstruction (MBIR), has facilitated the use of multiple denoisers are prior models in an optimization free framework to capture complex, non-linear prior information. However, 3D prior modelling in a Plug and Play approach for volumetric image reconstruction requires long processing time due to high computing requirement. Instead of directly using a 3D prior, this work proposes a BM3D Multi Slice Fusion (BM3D-MSF) prior that uses multiple 2D image denoisers fused to act as a fully 3D prior model in Plug and Play reconstruction approach. Our approach does not require training and are thus able to circumvent ethical issues related with patient training data and are readily deployable in varying noise and measurement sparsity levels. In addition, reconstruction with the BM3D-MSF prior achieves similar reconstruction image quality as fully 3D image priors, but with significantly reduced computational complexity. We test our method on clinical CT data and demonstrate that our approach improves reconstructed image quality.

Hossain, Maliha [ORNL]↗

Data and scripts from: “Denoising autoencoder for reconstructing sensor observation data and predicting evapotranspiration: noisy and missing values repair and uncertainty quantification”

This data package includes data and scripts from the manuscript “Denoising autoencoder for reconstructing sensor observation data and predicting evapotranspiration: noisy and missing values repair and uncertainty quantification”.The study addressed common challenges faced in environmental sensing and modeling, including uncertain input data, missing sensor observations, and high-dimensional datasets with interrelated but redundant variables. Point-scaled meteorological and soil sensor observations were perturbed with noises and missing values, and denoising autoencoder (DAE) neural networks were developed to reconstruct the perturbed data and further predict evapotranspiration. This study concluded that (1) the reconstruction quality of each variable depends on its cross-correlation and alignment to the underlying data structure, (2) uncertainties from the models were overall stronger than those from the data corruption, and (3) there was a tradeoff between reducing bias and reducing variance when evaluating the uncertainty of the machine learning models.This package includes:(1) Four ipython scripts (.ipynb): “DAE_train.ipynb” trains and evaluates DAE neural networks, “DAE_predict.ipynb” makes predictions from the trained DAE models, “ET_train.ipynb” trains and evaluates ET prediction neural networks, and “ET_predict.ipynb” makes predictions from trained ET models.(2) One python file (.py): “methods.py” includes all user-defined functions and python codes used in the ipython scripts.(3) A “sub_models” folder that includes five trained DAE neural networks (in pytorch format, .pt), which could be used to ingest input data before being fed to the downstream ET models in ‘ET_train.ipynb” or ‘ET_predict.ipynb’.(4) Two data files (.csv). Daily meteorological, vegetation, and soil data is in “df_data.csv”, where “df_meta.csv” contains the location and time information of “df_data.csv”. Each row (index) in “df_meta.csv” corresponds to each row in “df_data.csv”. These data files are formatted to follow the data structure requirements and be directly used in the ipython scripts, and they have been shuffled chronologically to train machine learning models. The meteorological and soil data was collected using point sensors between 2019-2023 at(4.a) Three shrub-dominated field sites in East River, Colorado (named “ph1”, “ph2” and “sg5” in “df_meta.csv”, where “ph1” and “ph2” were located at PumpHouse Hillslopes, and “sg5” was at Snodgrass Mountain meadow) and(4.b) One outdoor, mesoscale, and herbaceous-dominated experiment in Berkeley, California (named “tb” in “df_meta.csv”, short for Smartsoils Testbed at Lawrence Berkeley National Lab).- See "df_data_dd.csv" and "df_meta_dd.csv" for variable descriptions and the Methods section for additional data processing steps. See "flmd.csv" and "README.txt" for brief file descriptions.- All ipython scripts and python files are written in and require PYTHON language software.

54 ENVIRONMENTAL SCIENCES↗

Denoising with Three Dimensional Fourier Transform for Three Dimensional Images, Including Image Sequences

A method of mitigating noise in source image data representing pixels of a 3-D image. The "3-D image" may be any type of 3-D image, regardless of whether the third dimension is spatial, temporal, or some other parameter. The 3-D image is divided into three-dimensional chunks of pixels. These chunks are apodized and a three-dimensional Fourier transform is performed on each chunk, thereby producing a three-dimensional spectrum of each chunk. The transformed chunks are processed to estimate a noise floor based on spectral values of the pixels within each chunk. A noise threshold is then determined, and the spectrum of each chunk is filtered with a denoising filter based on the noise threshold. The chunks are then inverse transformed, and recombined into a denoised 3-D image.

DeForest, Craig E.↗

Spatio-Temporal Denoising Graph Autoencoders with Data Augmentation for Missing Photovoltaic Data Imputation

The integration of the global Photovoltaic (PV) market with real time data-loggers has enabled large scale PV data analytical pipelines for power forecasting and long-term reliability assessment of PV fleets. Nevertheless, the performance of PV data analysis heavily depends on the quality of PV timeseries data. This paper proposes a novel Spatio-Temporal Denoising Graph Autoencoder (STD-GAE) framework to impute missing PV Power Data. STDGAE exploits temporal correlation, spatial coherence, and value dependencies from domain knowledge to recover missing data. It is empowered by two modules. (1) To cope with sparse yet various scenarios of missing data, STD-GAE incorporates a domain-knowledge aware data augmentation module that creates plausible variations of missing data patterns. This generalizes STD-GAE to robust imputation over different seasons and environment. (2) STD-GAE nontrivially integrates spatiotemporal graph convolution layers (to recover local missing data by observed “neighboring” PV plants) and denoising autoencoder (to recover corrupted data from augmented counterpart) to improve the accuracy of imputation accuracy at PV fleet level. We have evaluated our proposed model on two realworld PV datasets. Experimental results show that STD-GAE can achieve a gain of 43.14% in imputation accuracy and remains less sensitive to missing rate, different seasons, and missing scenarios, compared with state-of-the-art data imputation methods such as MIDA and LRTC-TNN.

Fan, Yangxin↗

Deep Learning for Spectroscopic X-ray Nano-Imaging Denoising

Synchrotron transmission X-ray microscopy with absorption near edge structure (TXM-XANES) is a powerful tool for investigating the structure and composition of materials at nano- to meso-scales. It is, however, often challenged by high levels of noise that obscure critical details at the single-pixel level. To address this issue, a deep learning-based algorithm is developed for suppressing the image noise, grounded in self-supervised learning principles. In contrast to traditional image denoising methods, this approach successfully enhances the visibility of fine details while significantly reducing the noise in the X-ray images. Through this advancement, the potential of the approach for improving the accuracy and interpretability of the TXM-XANES data is demonstrated, thereby enabling more precise detection of nanoscale phenomena such as inhomogeneous cation redox and metal segregation in battery cathode materials. This technique offers an effective new avenue for harnessing the full potential of synchrotron TXM-XANES imaging, paving the way for a range of exciting new studies in materials science and beyond.

36 MATERIALS SCIENCE↗

Boosting Noise2Inverse via enhanced model selection for denoising computed tomography data

Synchrotron-based x-ray tomographic imaging enables the examination of the internal structure of materials at high spatial and temporal resolution. Experimental constraints can impose dose and time limits on the measurements, introducing a higher level of noise and artifacts in the reconstructed images. Deep learning has emerged as a powerful tool to remove noise from reconstructed images. Recently, the Noise2Inverse method was designed specifically for denoising reconstructed images without requiring paired noisy and clean images. This method creates multiple statistically independent reconstructions used to pair the data in which training involves transforming one reconstruction into the other, and vice versa. Originally designed to be used after a fixed number of epochs, we see in practice that this approach may not produce the optimal model and may unnecessarily waste computational resources. Therefore, we propose an alternative method of identifying the best model during training that aligns with the Noise2Inverse method. During validation, we compare the model output of the multiple reconstructions among each other. We hypothesize that the best model is the one that produces images with the highest similarity, implying a convergence in the predicted material properties and absorption values. To compare model outputs, we consider the absolute error, square error, structural similarity index (SSIM), peak signal-to-noise ratio (PSNR), and cosine similarity. We evaluate our method on two simulated tomography datasets and two, real-world, low-contrast, high-energy x-ray tomography datasets. We show our approach is more effective at determining the best model, up to an increase of 12.50% and 12.53% in SSIM and PSNR, respectively, while only requiring a fifth of the training time compared to the original approach.

CT↗

Autoencoders for Denoising Atmospheric Profiles from ICESat-2

Abstract: The 2nd generation Ice, Cloud, and land Elevation Satellite (ICESat-2) is an altimetry mission designed primarily for measuring ice sheet elevation and sea ice thickness, provides atmospheric profiles of clouds and aerosols at 532 nm using a photo counting detection approach. While highly sensitive for the detection of tenuous aerosol and cloud features, during the day signal-to-noise-ratio (SNR) photon counting detectors are adversely impacted by solar contributions to the total signal. Averaging the data to coarser horizontal resolutions has been the standard way to increase SNR and thus allow clouds and aerosols to be more easily detectable. Recent work has demonstrated success in boosting SNR without decreasing resolution using advanced filtering techniques [Yorks et al., 2021], however, rapid advancements in Deep Learning based image denoising algorithms can further improve the SNR. Here, we present results using a state-of-the-art Deep Learning autoencoder applied to noisy ICESat-2 data to improve daytime SNR and discuss implications for atmospheric feature detection, classification, and optical property retrievals.

denoising↗

A Route to Design Novel Functional Peptides by Applying a Denoising Diffusional Model to mRNA Display Libraries

In vitro directed evolution techniques, such as mRNA display, enable peptide ligand discovery and optimization. However, physical libraries that rely on a genetic code can only search a small fraction of sequence space due to inherent biases in the genetic code and experimental limitations. To address this challenge, denoising diffusion implicit models (DDIMs) are applied to generate novel peptide ligands against B‐cell lymphoma extra‐large (Bcl‐x L ), a key cancer target. Starting with high‐throughput sequencing data from previous selections, a DDIM is trained to produce novel sequences with high affinity binding. Experimental validation confirms that most generated sequences are functionally equivalent to the original library members for Bcl‐x L binding and demonstrated comparable binding kinetics and affinity relative to the wildtype and nearest original neighbors. Importantly, this approach generated rare sequences not easily accessible via mutation and directed evolution. These results indicate that DDIMs can complement and expand directed evolution data, efficiently exploring underrepresented regions of sequence space. This approach provides a broadly applicable framework for accelerating ligand discovery and optimizing molecular properties across diverse targets.

Qi, Pearl [Mork Family Department of Chemical Engi↗

Denoising diffusion probabilistic models for generative alloy design

Inverse material design is an extremely challenging optimization task made difficult by, in part, the highly nonlinear relationship linking performance with composition. Quantitative approaches have improved significantly owing to advances in high throughput experimentation and computational thermodynamics. However, existing physics-based tools are mostly forward models; input a chemistry and obtain a prediction. More recently the materials community has leveraged advances in the machine learning community to establish novel inverse design frameworks. Very recently denoising diffusion probabilistic models have been shown to be extremely powerful generators producing synthetic data of various modalities e.g. images, text, audio, tables, etc.. In this work a novel framework for alloy design and optimization is proposed leveraging these class of models. Five key generative tasks are demonstrated (1) unconditional generation (2) composition conditioned generation (3) property conditioned generation (4) multi-feedstock conditioned generation and (5) generative optimization. These methods were tested on three case studies: high entropy alloy design, superalloy binder jet additive manufacturing, and in-situ dual-feedstock wire-arc additive manufacturing. Results indicate that the established models are extremely flexible, expressive, and robust. The architecture’s flexibility and training procedure empower the model to learn complex intra-compositional and composition-property relationships. Furthermore, the probabilistic nature of these models makes them well suited for addressing solution non-uniqueness and tackling uncertainty quantification tasks. While the fidelity and quantity of the underlying training data is paramount, we envision that future alloy design frameworks will make extensive use of these kinds of machine learning models as “search” tools bolstering the utility of experimental and computational approaches.

36 MATERIALS SCIENCE↗

Regularization by denoising diffusion models for solving inverse PDE problems with application to full waveform inversion

Partial differential equation (PDE)-governed inverse problems are fundamental across various scientific and engineering applications; yet they face significant challenges due to nonlinearity, ill-posedness, and sensitivity to noise. Here, we introduce a computational framework, regularization by denoising using diffusion models for partial differential equations (RED-DiffEq), by integrating physics-driven inversion and data-driven learning. RED-DiffEq leverages pretrained diffusion models as a regularization mechanism for PDE-governed inverse problems. We apply RED-DiffEq to solve the full waveform inversion problem in geophysics, a challenging seismic imaging technique that seeks to reconstruct high-resolution subsurface velocity models from seismic measurement data. Our method shows enhanced accuracy and robustness compared to benchmark methods. Additionally, it exhibits strong generalization and domain decomposition capacity, enabling the inversion of more complex velocity models with larger domains than those used in training the diffusion model. Our framework can also be directly applied to diverse PDE-governed inverse problems.

Shan, Siming [Yale University, New Haven, CT (Unit↗

Tropical Cyclone Super Resolution using conditional diffusion denoising probabilistic model from mesoscale simulation to LES

Accurate modeling of tropical cyclone wind fields is essential for the design, risk assessment, and operational planning of offshore energy infrastructure. While mesoscale simulations are widely used thanks to their computational efficiency, they lack the necessary resolution to capture key features such as wind shear and veer profiles as well as the distribution turbulent kinetic energy (TKE). High-fidelity large-eddy simulation (LES) models on the other hand, can resolve turbulent structures and provide a more accurate representation of the complex wind field, albeit at a higher computational cost. To address this modeling gap, we introduce a two-part generative framework to enhance the resolution and physics-capturing ability of mesoscale simulations. First, a reduced-order model based on Karhunen–Loève (KL) decomposition is used to extract dominant spatial modes from one-dimensional mean wind profiles. A multilayer perceptron (MLP) is trained to map mesoscale mode weights to their LES counterparts, enabling accurate reconstruction of vertical velocity profiles. Second, a conditional Diffusion Denoising Probabilistic Model (DDPM) is developed to super-resolve coarse and low-fidelity mesoscale velocity fields, recovering fine-scale turbulence structures and stress distributions. The framework is evaluated across different tropical cyclone intensity categories defined by the Saffir–Simpson scale and demonstrates strong performance in both interpolation and extrapolation tasks. The generated fields accurately reproduce spatial coherence, stress distributions, and spectral energy characteristics observed in LES data. By bridging the fidelity gap between mesoscale and LES outputs, this approach offers a scalable, data-driven solution for enhancing the representation of tropical cyclone wind fields, enabling more robust offshore energy infrastructure systems design in tropical-cyclone-prone areas.

17 WIND ENERGY↗

Effectiveness of denoising diffusion probabilistic models for fast and high-fidelity whole-event simulation in high-energy heavy-ion experiments

Artificial intelligence (AI) generative models, such as generative adversarial networks (GANs), variational autoencoders, and normalizing flows, have been widely used and studied as efficient alternatives for traditional scientific simulations. However, they have several drawbacks, including training instability and inability to cover the entire data distribution, especially for regions where data are rare. This is particularly challenging for whole-event, full-detector simulations in high-energy heavy-ion experiments, such as sPHENIX at the Relativistic Heavy Ion Collider and Large Hadron Collider experiments, where thousands of particles are produced per event and interact with the detector. This work investigates the effectiveness of denoising diffusion probabilistic models (DDPMs) as an AI-based generative surrogate model for the sPHENIX experiment that includes the heavy-ion event generation and response of the entire calorimeter stack. DDPM performance in sPHENIX simulation data is compared with a popular rival, GANs. Results show that both DDPMs and GANs can reproduce the data distribution where the examples are abundant (low-to-medium calorimeter energies). Nonetheless, DDPMs significantly outperform GANs, especially in high-energy regions where data are rare. Additionally, DDPMs exhibit superior stability compared to GANs. The results are consistent between both central and peripheral centrality heavy-ion collision events. Moreover, DDPMs offer a substantial speedup of approximately a factor of 100 compared to the traditional Geant4 simulation method.

42 ENGINEERING↗

Denoising diffusion models with geometry adaptation for high fidelity calorimeter simulation

Simulation is crucial for all aspects of collider data analysis, but the available computing budget in the High Luminosity LHC era will be severely constrained. Generative machine learning models may act as surrogates to replace physics-based full simulation of particle detectors, and diffusion models have recently emerged as the state of the art for other generative tasks. Here, we introduce CaloDiffusion, a denoising diffusion model trained on the public CaloChallenge datasets to generate calorimeter showers. Our algorithm employs 3D cylindrical convolutions, which take advantage of symmetries of the underlying data representation. To handle irregular detector geometries, we augment the diffusion model with a new geometry latent mapping (GLaM) layer to learn forward and reverse transformations to a regular geometry that is suitable for cylindrical convolutions. The showers generated by our approach are nearly indistinguishable from the full simulation, as measured by several different metrics.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Denoising of imaginary time response functions with Hankel projections

Imaginary-time response functions of finite-temperature quantum systems are often obtained with methods that exhibit stochastic or systematic errors. Reducing these errors comes at a large computational cost—in quantum Monte Carlo simulations, the reduction of noise by a factor of two incurs a simulation cost of a factor of four. In this paper, we relate certain imaginary-time response functions to an inner product on the space of linear operators on Fock space. We then show that data with noise typically does not respect the positive definiteness of its associated Gramian. The Gramian has the structure of a Hankel matrix. As a method for denoising noisy data, we introduce an alternating projection algorithm that finds the closest positive definite Hankel matrix consistent with noisy data. We test our methodology at the example of fermion Green's functions for continuous-time quantum Monte Carlo data and show remarkable improvements of the error, reducing noise by a factor of up to 20 in practical examples. We argue that Hankel projections should be used whenever finite-temperature imaginary-time data of response functions with errors is analyzed, be it in the context of quantum Monte Carlo, quantum computing, or in approximate semianalytic methodologies. Published by the American Physical Society 2024

Yu, Yang (ORCID:0000000186178878)↗

Deep Learning Denoiser

SAND2022-14744 O The Deep Learning Denoiser uses a trained deep convolutional neural network (CNN) model to decompose an input waveform into a signal and noise waveform. In the approach, the CNN provides a signal mask and a noise mask for an input signal. The Short-Time Fourier Transform (STFT) of the estimated signal is obtained by multiplying the signal mask with the STFT of the input signal. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Koch, Clinton↗

PySolate : A Python‐Based Thresholding Tool to Denoise or Designal Seismic Waveforms Based on the Continuous Wavelet Transform

PySolate is a Python‐based toolset that implements the continuous wavelet transform and nonlinear thresholding operations to denoise or designal seismic data, following Langston and Mousavi (2019). This filtering approach can remove microseismic noise to isolate intermediate‐period seismic signals that are key to enabling full‐waveform modeling and analysis of smaller‐magnitude regional events. This approach is best for the application to signals with frequency or time separation of signal and noise, in contrast to Fourier analysis, which is effective when signal and noise are separated in frequency. We demonstrate the Python toolset using the six announced Democratic People’s Republic of Korea declared nuclear tests, showing the effectiveness of isolating the seismic signal compared to standard bandpass filtering. In conclusion, we also demonstrate the ease of using the toolset with any Python processing tools.

Asia↗

Towards universal unfolding of detector effects in high-energy physics using denoising diffusion probabilistic models

Correcting for detector effects in experimental data, particularly through unfolding, is critical for enabling precision measurements in high-energy physics. However, traditional unfolding methods face challenges in scalability, flexibility, and dependence on simulations. We introduce a novel approach to multidimensional object-wise unfolding using conditional Denoising Diffusion Probabilistic Models (cDDPM). Our method utilizes the cDDPM for a non-iterative, flexible posterior sampling approach, incorporating distribution moments as conditioning information, which exhibits a strong inductive bias that allows it to generalize to unseen physics processes without explicitly assuming the underlying distribution. Our results highlight the potential of this method as a step towards a "universal" unfolding tool that reduces dependence on truth-level assumptions, while enabling the unfolding of a wide range of measured distributions with improved adaptability and accuracy.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗