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At least 37 records · Page 2

Multi-Parent Clustering Algorithms from Stochastic Grammar Data Models

We introduce a statistical data model and an associated optimization-based clustering algorithm which allows data vectors to belong to zero, one or several "parent" clusters. For each data vector the algorithm makes a discrete decision among these alternatives. Thus, a recursive version of this algorithm would place data clusters in a Directed Acyclic Graph rather than a tree. We test the algorithm with synthetic data generated according to the statistical data model. We also illustrate the algorithm using real data from large-scale gene expression assays.

Mjoisness, Eric↗

The SPASE Data Model: A Metadata Standard for Registering, Finding, Accessing, and Using Heliophysics Data Obtained from Observations and Modeling

The Space Physics Archive Search and Extract Consortium has developed and implemented the SPASE Data Model that provides a common language for registering a wide range of Heliophysics data and other products. The Data Model enables discovery and access tools such that any researcher can obtain data easily, thereby facilitating research, including on space weather. The Data Model includes descriptions of Simulation Models and Numerical Output, pioneered by the Integrated Medium for Planetary Exploration (IMPEx) group in Europe, and subsequently adopted by the Community Coordinated Modeling Center (CCMC). The SPASE group intends to register all relevant Heliophysics data resources, including space-, ground-, and model-based. Substantial progress has been made, especially for space-based observational data and associated observatories, instruments, and display data. Legacy product registrations and access go back more than 50 years. Real-time data will be included. The National Aeronautics and Space Administration (NASA) portion of the SPASE group has funding that assures continuity in the upkeep of the Data Model and aids with adding new products. Tools are being developed for making and editing data descriptions. Digital Object Identifiers (DOIs) for Data Products can now be included in the descriptions. The data access that SPASE facilitates is becoming more uniform, and work is progressing on Web Service access via a standard Application Programming Interface. The SPASE Data Model is stable; changes over the past 9 years were additions of terms and capabilities that are backward compatible. This paper provides a summary of the history, structure, use, and future of the SPASE Data Model.

Roberts, D. Aaron↗

Data Model Management for Space Information Systems

The Reference Architecture for Space Information Management (RASIM) suggests the separation of the data model from software components to promote the development of flexible information management systems. RASIM allows the data model to evolve independently from the software components and results in a robust implementation that remains viable as the domain changes. However, the development and management of data models within RASIM are difficult and time consuming tasks involving the choice of a notation, the capture of the model, its validation for consistency, and the export of the model for implementation. Current limitations to this approach include the lack of ability to capture comprehensive domain knowledge, the loss of significant modeling information during implementation, the lack of model visualization and documentation capabilities, and exports being limited to one or two schema types. The advent of the Semantic Web and its demand for sophisticated data models has addressed this situation by providing a new level of data model management in the form of ontology tools. In this paper we describe the use of a representative ontology tool to capture and manage a data model for a space information system. The resulting ontology is implementation independent. Novel on-line visualization and documentation capabilities are available automatically, and the ability to export to various schemas can be added through tool plug-ins. In addition, the ingestion of data instances into the ontology allows validation of the ontology and results in a domain knowledge base. Semantic browsers are easily configured for the knowledge base. For example the export of the knowledge base to RDF/XML and RDFS/XML and the use of open source metadata browsers provide ready-made user interfaces that support both text- and facet-based search. This paper will present the Planetary Data System (PDS) data model as a use case and describe the import of the data model into an ontology tool. We will also describe the current effort to provide interoperability with the European Space Agency (ESA)/Planetary Science Archive (PSA) which is critically dependent on a common data model.

RDF↗

Small Scale WEC Performance Modeling Data

Small Scale WEC Performance Modeling Data is performance data from downscaled models of common WEC devices and their calculated performance outputs. This data is used by the Small WEC interactive modeling tool hosted by PRIMRE. The devices include a point absorber, a two-body point absorber (RM3), an oscillating surge device (OSWEC), and an attenuator type device (McCabe Wave Pump). One of the primary use cases for this work is to give an easy way to compare power output for a variety of WECs and model sizes.

16 TIDAL AND WAVE POWER↗

Using semantic data modeling techniques to organize an object-oriented database for extending the mass storage model

A methodology for optimizing organization of data obtained by NASA earth and space missions is discussed. The methodology uses a concept based on semantic data modeling techniques implemented in a hierarchical storage model. The modeling is used to organize objects in mass storage devices, relational database systems, and object-oriented databases. The semantic data modeling at the metadata record level is examined, including the simulation of a knowledge base and semantic metadata storage issues. The semantic data model hierarchy and its application for efficient data storage is addressed, as is the mapping of the application structure to the mass storage.

Campbell, William J.↗

Kamodo: Simplifying Model Data Access and Utilization

To address the lack of user-friendly software needed to simplify the utilization of model data across Heliophysics, the Community Coordinated Modeling Center (CCMC) at NASA’s Goddard Space Flight Center has developed a model-agnostic method via Kamodo for users to easily access and utilize model data in their workflows. By abstracting away the broad range of file formats and the intricacies of interpolation on specialized grids, this approach significantly lowers the barrier to model data access and utilization for the community while adding exciting new capabilities to their tool boxes. This paper describes the direct interfaces to the model data, called model readers, and a basic introduction on how to use them. Additionally, we detail the planned approach for including custom interpolation codes, and include current progress on specialized visualization developments. The CCMC is maintaining Kamodo as an official NASA open-sourced software to enable and encourage community collaboration.

Heliophysics↗

A generalized approach to x-ray data modeling for high-energy-density plasma experiments

Accurate understanding of x-ray diagnostics is crucial for both interpreting high-energy-density experiments and testing simulations through quantitative comparisons. X-ray diagnostic models are complex. Past treatments of individual x-ray diagnostics on a case-by-case basis have hindered universal diagnostic understanding. Here, in this study, we derive a general formula for modeling the absolute response of non-focusing x-ray diagnostics, such as x-ray imagers, one-dimensional space-resolved spectrometers, and x-ray power diagnostics. The present model is useful for both data modeling and data processing. It naturally accounts for the x-ray crystal broadening. The new model verifies that standard approaches for a crystal response can be good approximations, but they can underestimate the total reflectivity and overestimate spectral resolving power by more than a factor of 2 in some cases near reflectivity edge features. We also find that a frequently used, simplified-crystal-response approximation for processing spectral data can introduce an absolute error of more than an order of magnitude and the relative spectral radiance error of a factor of 3. The present model is derived with straightforward geometric arguments. It is more general and is recommended for developing a unified picture and providing consistent treatment over multiple x-ray diagnostics. Such consistency is crucial for reliable multi-objective data analyses.

Nagayama, Taisuke↗

A Variational Assimilation Method for Satellite and Conventional Data: Model 2 (version 1)

The Model II variational data assimilation model is the second of the four variational models designed to blend diverse meteorological data into a dynamically constrained data set. Model II differs from Model I in that it includes the thermodynamic equation as the fifth dynamical constraint. Thus, Model II includes all five of the primative equations that govern atmospheric flow for a dry atmosphere.

Achtemeier, Gary L.↗

Beyond Ecosystem Modeling: A Roadmap to Community Cyberinfrastructure for Ecological Data-Model Integration

In an era of rapid global change, our ability to understand and predict Earth's natural systems is lagging behind our ability to monitor and measure changes in the biosphere. Bottlenecks to informing models with observations have reduced our capacity to fully exploit the growing volume and variety of available data. Here, we take a critical look at the information infrastructure that connects ecosystem modeling and measurement efforts, and propose a roadmap to community cyberinfrastructure development that can reduce the divisions between empirical research and modeling and accelerate the pace of discovery. A new era of data‐model integration requires investment in accessible, scalable, and transparent tools that integrate the expertise of the whole community, including both modelers and empiricists. This roadmap focuses on five key opportunities for community tools: the underlying foundations of community cyberinfrastructure; data ingest; calibration of models to data; model‐data benchmarking; and data assimilation and ecological forecasting. This community‐driven approach is a key to meeting the pressing needs of science and society in the 21st century.

Istem Fer↗

Space Station Freedom (SSF) Data Management System (DMS) performance model data base

The purpose of this document was originally to be a working document summarizing Space Station Freedom (SSF) Data Management System (DMS) hardware and software design, configuration, performance and estimated loading data from a myriad of source documents such that the parameters provided could be used to build a dynamic performance model of the DMS. The document is published at this time as a close-out of the DMS performance modeling effort resulting from the Clinton Administration mandated Space Station Redesign. The DMS as documented in this report is no longer a part of the redesigned Space Station. The performance modeling effort was a joint undertaking between the National Aeronautics and Space Administration (NASA) Johnson Space Center (JSC) Flight Data Systems Division (FDSD) and the NASA Ames Research Center (ARC) Spacecraft Data Systems Research Branch. The scope of this document is limited to the DMS core network through the Man Tended Configuration (MTC) as it existed prior to the 1993 Clinton Administration mandated Space Station Redesign. Data is provided for the Standard Data Processors (SDP's), Multiplexer/Demultiplexers (MDM's) and Mass Storage Units (MSU's). Planned future releases would have added the additional hardware and software descriptions needed to describe the complete DMS. Performance and loading data through the Permanent Manned Configuration (PMC) was to have been included as it became available. No future releases of this document are presently planned pending completion of the present Space Station Redesign activities and task reassessment.

Stovall, John R.↗

LinkML: an open data modeling framework

Background Scientific research relies on well-structured, standardized data; however, much of it is stored in formats such as free-text lab notebooks, nonstandardized spreadsheets, or data repositories. This lack of structure challenges interoperability, making data integration, validation, and reuse difficult. Findings LinkML (Linked Data Modeling Language) is an open framework that simplifies the process of authoring, validating, and sharing data. LinkML can describe a range of data structures, from flat, list-based models to complex, interrelated, and normalized models that utilize polymorphism and compound inheritance. It offers an approachable syntax that is not tied to any one technical architecture and can be integrated seamlessly with many existing frameworks. The LinkML syntax provides a standard way to describe schemas, classes, and relationships, allowing modelers to build well-defined, stable, and optionally ontology-aligned data structures. Once defined, LinkML schemas may be imported into other LinkML schemas. These key features make LinkML an accessible platform for interdisciplinary collaboration and a reliable way to define and share data semantics. Conclusions LinkML helps reduce heterogeneity, complexity, and the proliferation of single-use data models while simultaneously enabling compliance with FAIR (Findable, Accessible, Interoperable, and Reusable) data standards. LinkML has seen increasing adoption in various fields, including biology, chemistry, biomedicine, microbiome research, finance, electrical engineering, transportation, and commercial software development. In short, LinkML makes implicit models explicitly computable and allows data to be standardized at their origin. LinkML documentation and code are available at https://linkml.io/.

AI-ready data↗

Multi-task Parallelism for Robust Pre-training of Graph Foundation Models on Multi-source, Multi-fidelity Atomistic Modeling Data

Graph foundation models using graph neural networks promise sustainable, efficient atomistic modeling. To tackle challenges of processing multi-source, multi-fidelity data during pre-training, recent studies employ multi-task learning, in which shared message passing layers initially process input atomistic structures regardless of source, then route them to multiple decoding heads that predict data-specific outputs. This approach stabilizes pre-training and enhances a model’s transferability to unexplored chemical regions. Preliminary results on approximately four million structures are encouraging, yet questions remain about generalizability to larger, more diverse datasets and scalability on supercomputers. We propose a multi-task parallelism method that distributes each head across computing resources with GPU acceleration. Implemented in the open-source HydraGNN architecture, our method was trained on over 24 million structures from five datasets and tested on the Perlmutter, Aurora, and Frontier supercomputers, demonstrating efficient scaling on all three highly heterogeneous super-computing architectures.

Lupo Pasini, Massimiliano [ORNL] (ORCID:0000000249↗

Color graphics workstations used for simultaneous display of satellite and model data sets

Model-measurement display methods for studying actual or synthetic satellite measurements of cloudiness are developed. Visualization and animation techniques are employed to analyze the data. Two types of animation sequences, one based on Insat IR geosynchronous satellite imagery combined with upper level velocity potentials calculations and isoline depictions of the high amplitude centers of low frequency cloudiness activity, and the other combines a mesoscale cloud model simulation of a severe hail storm and synthetic microwave radiation signatures, are described.

Cooper, Harry J.↗

A Preliminary Data Model for Orbital Flight Dynamics in Shuttle Mission Control

The Orbital Flight Dynamics group in Shuttle Mission Control is investigating new user interfaces in a project called RIOTS [RIOTS 2000]. Traditionally, the individual functions of hardware and software guide the design of displays, which results in an aggregated, if not integrated interface. The human work system has then been designed and trained to navigate, operate and integrate the processors and displays. The aim of RIOTS is to reduce the cognitive demands of the flight controllers by redesigning the user interface to support the work of the flight controller. This document supports the RIOTS project by defining a preliminary data model for Orbital Flight Dynamics. Section 2 defines an information-centric perspective. An information-centric approach aims to reduce the cognitive workload of the flight controllers by reducing the need for manual integration of information across processors and displays. Section 3 describes the Orbital Flight Dynamics domain. Section 4 defines the preliminary data model for Orbital Flight Dynamics. Section 5 examines the implications of mapping the data model to Orbital Flight Dynamics current information systems. Two recurring patterns are identified in the Orbital Flight Dynamics work the iteration/rework cycle and the decision-making/information integration/mirroring role relationship. Section 6 identifies new requirements on Orbital Flight Dynamics work and makes recommendations based on changing the information environment, changing the implementation of the data model, and changing the two recurring patterns.

ONeill, John↗

The VIS-AD data model: Integrating metadata and polymorphic display with a scientific programming language

The VIS-AD data model integrates metadata about the precision of values, including missing data indicators and the way that arrays sample continuous functions, with the data objects of a scientific programming language. The data objects of this data model form a lattice, ordered by the precision with which they approximate mathematical objects. We define a similar lattice of displays and study visualization processes as functions from data lattices to display lattices. Such functions can be applied to visualize data objects of all data types and are thus polymorphic.

Hibbard, William L.↗

NASA Global Satellite and Model Data Products and Services for Tropical Meteorology and Climatology

Satellite remote sensing and model data play an important role in research and applications of tropical meteorology and climatology over vast, data sparse oceans and remote continents. Since the first weather satellite was launched by NASA in 1960, a large collection of NASA's Earth science data is freely available to the research and application communities around the world, significantly improving our overall understanding of the Earth system and environment. Established in the mid-80s, the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC), located in Maryland, USA, is a data archive center for multidisciplinary, satellite and model assimilation data products. As one of the 12 NASA data centers in Earth Sciences, GES DISC hosts several important NASA satellite missions for tropical meteorology and climatology such as the Tropical Rainfall Measuring Mission (TRMM), the Global Precipitation Measurement (GPM) mission and the Modern-Era Retrospective analysis for Research and Applications (MERRA). Over the years, GES DISC has developed data services to facilitate data discovery, access, distribution, analysis and visualization, including Giovanni, an online analysis and visualization tool without the need to download data and software. Despite many efforts for improving data access, still quite a number of challenges remain, such as finding datasets and services for a specific research topic or project, especially for inexperienced users or users outside the remote sensing community. In this article, we list and describe major NASA satellite remote sensing and model datasets and services for tropical meteorology and climatology along with examples of using the data and services, in hope that may help users better utilize the information in their research and applications.

tropical meteorology and climatology, data, servic↗