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At least 37 records · Page 2

Data Science-Driven Analysis of Substrate-Permissive Diketopiperazine Reverse Prenyltransferase NotF: Applications in Protein Engineering and Cascade Biocatalytic Synthesis of (-)-Eurotiumin A

Prenyltransfer is an early-stage carbon-hydrogen bond (C-H) functionalization prevalent in the biosynthesis of a diverse array of biologically active bacterial, fungal, plant, and metazoan diketopiperazine (DKP) alkaloids. Toward the development of a unified strategy for biocatalytic construction of prenylated DKP indole alkaloids, we sought to identify and characterize a substrate-permissive C2 reverse prenyltransferase (PT). As the first tailoring event within the biosynthesis of cytotoxic notoamide metabolites, PT NotF catalyzes C2 reverse prenyltransfer of brevianamide F. Solving a crystal structure of NotF (in complex with native substrate and prenyl donor mimic dimethylallyl S-thiolodiphosphate (DMSPP)) revealed a large, solvent-exposed active site, intimating NotF may possess a significantly broad substrate scope. To assess the substrate selectivity of NotF, we synthesized a panel of 30 sterically and electronically differentiated tryptophanyl DKPs, the majority of which were selectively prenylated by NotF in synthetically useful conversions (2 to > 99%). Quantitative representation of this substrate library and development of a descriptive statistical model provided insight into the molecular origins of NotF's substrate promiscuity. This approach enabled the identification of key substrate descriptors (electrophilicity, size, and flexibility) that govern the rate of NotF-catalyzed prenyltransfer, and the development of an "induced fit docking (IFD)-guided" engineering strategy for improved turnover of our largest substrates. We further demonstrated the utility of NotF in tandem with oxidative cyclization using flavin monooxygenase, BvnB. This one-pot, in vitro biocatalytic cascade enabled the first chemoenzymatic synthesis of the marine fungal natural product, (-)-eurotiumin A, in three steps and 60% overall yield.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Data driven pathway analysis and forecast of global warming and sea level rise

Climate change is a critical issue of our time, and its causes, pathways, and forecasts remain a topic of broader discussion. In this paper, we present a novel data driven pathway analysis framework to identify the key processes behind mean global temperature and sea level rise, and to forecast the magnitude of their increase from the present to 2100. Based on historical data and dynamic statistical modeling alone, we have established the causal pathways that connect increasing greenhouse gas emissions to increasing global mean temperature and sea level, with its intermediate links encompassing humidity, sea ice coverage, and glacier mass, but not for sunspot numbers. Our results indicate that if no action is taken to curb anthropogenic greenhouse gas emissions, the global average temperature would rise to an estimated 3.28 °C (2.46–4.10 °C) above its pre-industrial level while the global sea level would be an estimated 573 mm (474–671 mm) above its 2021 mean by 2100. However, if countries adhere to the greenhouse gas emission regulations outlined in the 2021 United Nations Conference on Climate Change (COP26), the rise in global temperature would lessen to an average increase of 1.88 °C (1.43–2.33 °C) above its pre-industrial level, albeit still higher than the targeted 1.5 °C, while the sea level increase would reduce to 449 mm (389–509 mm) above its 2021 mean by 2100.

54 ENVIRONMENTAL SCIENCES↗

Data-Driven Method for Nonlinear Modal Interaction Identification in Fighter Aircraft

The purpose of this paper is to report a new data-driven analysis methodology for identifying nonlinear modal interactions and its application to aeroelastic wind-tunnel data from a generic fighter configuration, which reveals global modal interactions in this system caused by multiple resonance capture events initiated by local nonlinearities. It is shown that during supersonic testing at the Transonic Dynamics Tunnel, vibro-impacts at the embedded external fuel tank shakers on the inboard underwing stations of the generic fighter introduce strong nonlinearity that gives rise to nonlinear modal interactions. Specifically, time–frequency analysis of the acceleration data demonstrates that 6∶5 and 7∶6 transient resonance captures occur across the aircraft exclusively during this vibro-impact forcing window. Further analysis suggests that these resonance captures are dependent on Mach number. These results show experimentally that local vibro-impacts can cause global nonlinear effects in an aeroelastic system and that these effects can be identified using the new methodology herein. The data-driven analysis scheme employed shows applicability to full-aircraft flight test data for identifying nonlinear modal interactions without knowledge of the precise nonlinear contributors.

nonlinear dynamics↗

Integrating tactical planning, operational planning and scheduling using data-driven feasibility analysis

Supply chain operations and scheduling are well-studied problems in the literature. Although these problems are related, they are often solved sequentially. This uncoordinated approach usually leads to sub-optimal solutions. Here this paper proposes a methodology for integrating scheduling operations into the supply chain network, motivated by the available enterprise data, and feasibility analysis. Existing literature on integrated models for addressing the supply chain is reviewed and classified. Then the mathematical model formulation for each level is discussed, after which the proposed data-driven integrated framework is described. The methodology is tested on two different case studies of varying dimensions. For each case study, the solution solves a multi-objective problem with the overall aim of an optimal solution that is robust towards achieving optimal cost while keeping customer satisfaction in mind.

42 ENGINEERING↗

What drives the variance of galaxy spectra?

We present a study aimed at understanding the physical phenomena underlying the formation and evolution of galaxies following a data-driven analysis of spectroscopic data based on the variance in a carefully selected sample. We apply principal component analysis (PCA) independently to three subsets of continuum-subtracted optical spectra, segregated into their nebular emission activity as quiescent, star-forming, and active galactic nuclei (AGNs). We emphasize that the variance of the input data in this work only relates to the absorption lines in the photospheres of the stellar populations. The sample is taken from the Sloan Digital Sky Survey (SDSS) in the stellar velocity dispersion range 100–150 km s −1 , to minimize the ‘blurring’ effect of the stellar motion. We restrict the analysis to the first three principal components (PCs) and find that PCA segregates the three types with the highest variance mapping SSP-equivalent age, along with an inextricable degeneracy with metallicity, even when all three PCs are included. Spectral fitting shows that stellar age dominates PC1, whereas PC2 and PC3 have a mixed dependence of age and metallicity. The trends support – independently of any model fitting – the hypothesis of an evolutionary sequence from star formation to AGN to quiescence. As a further test of the consistency of the analysis, we apply the same methodology in different spectral windows, finding similar trends, but the variance is maximal in the blue wavelength range, roughly around the 4000 Å break.

79 ASTRONOMY AND ASTROPHYSICS↗

Navigation Sensor Technology Assessment Capability for Data-Driven Systems Analysis

The capability to assess the mission performance of novel navigation technologies from a systems-level approach and to provide quantitative results is crucial. With growing interest and innovations from NASA’s commercial partners, data-driven results that quantify the technological impact will guide research developments and facilitate stakeholder decision-making while requiring less time and resources. This paper presents a method to evaluate various sensor combinations and their impact on the overall system performance using an existing six degrees-of-freedom, physics-based engineering simulation for a government reference lunar lander as a testbed. Selected navigation technologies over various technology readiness levels, including Inertial Measurement Units, Navigation Doppler Lidar, and radar altimeter-radar velocimeter, were studied in this paper. Results using this testbed to perform sensitivity studies and to provide quantitative assessments are reported. One key finding is that there are diminishing returns for reducing sensor errors. The most influential sensor parameter to landing success are vehicle configuration and mission dependent. Results from this method could be used by stakeholders to make data-driven systems-based decisions and by technology developers as guidance for the specific parameter improvements that will have the most significant impact on mission success. This capability could be further used to assess alternative scenarios should one type of technology become unavailable or to re-assess initial assumptions and identify appropriate requirements from a system perspective.

Esther Lee↗

Data-driven Vulnerability Analysis of Networked Pipeline System

This paper introduces an attack generation framework for evaluating the vulnerability of nonlinear networked pipeline systems. The vulnerability analysis is formulated as determining the presence of feasible attack sets, defined by boundary functions representing the effectiveness and stealthiness of attack signals with respect to the objective and attack detection module. The framework utilizes three data-driven models, including two discriminative models that learn the boundary functions and a generative model that produces elements of the feasible attack set. A new loss function ensures successful attack generation with high probability.

03 NATURAL GAS↗

Leading Energy Analysis: Data-Driven Insights That Power Our Energy Future

Energy analysts at the National Renewable Energy Laboratory (NREL) use a broad set of expertise and cutting-edge tools to capture the complexities of our interconnected energy system. Decision-makers rely on these insights to drive cost savings, enhance grid reliability, support long-term innovation, and bolster America's energy workforce and global competitiveness. This fact sheet highlights some of NREL's high-impact analyses, data, and tools, largely focusing on power grid analysis.

data↗

Development of Renewable Energy Data for Facilitating the Clean Energy Transition in Vietnam

Vietnam is transforming its power system with an increasing share of variable renewable energy (VRE) in the generation mix and plans to achieve 27% VRE by capacity in 2030 and 42% by capacity in 2045, as indicated by the draft Eighth Power Development Plan for 2020–-2045 (PDP8). Further increase in VRE penetration is possible with data-driven analysis where availability of data, specifically VRE data, becomes critical. NREL has worked with various stakeholders in Vietnam to create high-resolution multi-year VRE data publicly available to all. This paper reviews this new VRE data for Vietnam and how different stakeholders can use this data to inform VRE deployment decisions.

24 POWER TRANSMISSION AND DISTRIBUTION↗

EMPHATIC Silicon Strip Detector Efficiencies

EMPHATIC is an experiment at Fermilab which aims to reduce current neutrino flux uncertainties. This report discusses the limitations current neutrino flux uncertainties places on large scale neutrino experiments, provides background on the EMPHATIC experiment, and details the project of determining the efficiency of the Silicon Strip Detectors (SSDs) used in EMPHATIC. As part of the data analysis process and in order to increase the accuracy of EMPHATIC’s simulations a representation of efficiency of each SSD is required. To achieve this a data-driven analysis was performed on EMPHATIC's collected data using the Root and Art frameworks. Visual and numerical representations of efficiency were determined. The average efficiency over all SSDs is 98.58\%, however this number deflated as it includes known bad channels.

Olson, Virginia [Illinois U., Urbana (main)]↗

Determining the Efficiency of EMPHATICs Silicon Strip Detectors (SSDs)

EMPHATIC is an experiment at Fermilab which aims to reduce current neutrino flux uncertainties. This report discusses the limitations current neutrino flux uncertainties places on large scale neutrino experiments, provides background on the EMPHATIC experiment, and details the project of determining the efficiency of the Silicon Strip Detectors (SSDs) used in EMPHATIC. As part of the data analysis process and in order to increase the accuracy of EMPHATIC’s simulations a representation of efficiency of each SSD is required. To achieve this a data-driven analysis was performed on EMPHATIC's collected data using the Root and Art frameworks. Visual and numerical representations of efficiency were determined. The average efficiency over all SSDs is 98.58\%, however this number deflated as it includes known bad channels.

Olson, V. [Illinois U., Urbana (main)]↗

Street context of various demographic groups in their daily mobility

Abstract We present an urban science framework to characterize phone users’ exposure to different street context types based on network science, geographical information systems (GIS), daily individual trajectories, and street imagery. We consider street context as the inferred usage of the street, based on its buildings and construction, categorized in nine possible labels. The labels define whether the street is residential, commercial or downtown, throughway or not, and other special categories. We apply the analysis to the City of Boston, considering daily trajectories synthetically generated with a model based on call detail records (CDR) and images from Google Street View. Images are categorized both manually and using artificial intelligence (AI). We focus on the city’s four main racial/ethnic demographic groups (White, Black, Hispanic and Asian), aiming to characterize the differences in what these groups of people see during their daily activities. Based on daily trajectories, we reconstruct most common paths over the street network. We use street demand (number of times a street is included in a trajectory) to detect each group’s most relevant streets and regions. Based on their street demand, we measure the street context distribution for each group. The inclusion of images allows us to quantitatively measure the prevalence of each context and points to qualitative differences on where that context takes place. Other AI methodologies can further exploit these differences. This approach presents the building blocks to further studies that relate mobile devices’ dynamic records with the differences in urban exposure by demographic groups. The addition of AI-based image analysis to street demand can power up the capabilities of urban planning methodologies, compare multiple cities under a unified framework, and reduce the crudeness of GIS-only mobility analysis. Shortening the gap between big data-driven analysis and traditional human classification analysis can help build smarter and more equal cities while reducing the efforts necessary to study a city’s characteristics.

Salgado, Ariel (ORCID:0000000177015372)↗

Inverse size-dependent Stokes shift in strongly quantum confined CsPbBr 3 perovskite nanoplates

Colloidal semiconductor nanocrystals (NCs) are used as bright chromatic fluorophores for energy-efficient displays. Here we focus here on the size-dependent Stokes shift for CsPbBr 3 nanocrystals. The Stokes shift, i.e., the difference between the wavelengths of absorption and emission maxima, is crucial for display application, as it controls the degree to which light is reabsorbed by the emitting material reducing the energetic efficiency. One major impediment to the industrial adoption of NCs is that slight deviations in manufacturing conditions may result in a wide dispersion of the product's properties. A data-driven analysis of over 2000 reactions comparing two data sets, one produced via standard colloidal synthesis and the other via high-throughput automated synthesis is discussed. We show that differences in the reaction conditions of colloidal CsPbBr 3 nanocrystals yield nanocrystals with opposite Stokes shift size-dependent trends. These match the morphologies of two-dimensional nanoplatelets (NPLs) and nanocrystal cubes. The Stokes shift size dependence trend of NPLs and nanocubes is non-monotonic indicating different physics is at play for the two nanocrystal morphologies. For nanocrystals with cubic shape, with the increase of edge length, there is a significant decrease in Stokes shift values. However, for NPLs with the increase of thickness (1–4 ML), Stokes shift values will increase. The study emphasizes the transition from a spectroscopic point of view and relates the two Stokes shift trends to 2D and 0D exciton dimensionalities for the two morphologies. Our findings highlight the importance of CsPbBr 3 nanocrystal morphology for Stokes shift prediction.

36 MATERIALS SCIENCE↗