Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Bayesian imaging”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 37 records · Page 2

Automated Detection of Oscillating Regions in the Solar Atmosphere

Recently observed oscillations in the solar atmosphere have been interpreted and modeled as magnetohydrodynamic wave modes. This has allowed for the estimation of parameters that are otherwise hard to derive, such as the coronal magnetic-field strength. This work crucially relies on the initial detection of the oscillations, which is commonly done manually. The volume of Solar Dynamics Observatory (SDO) data will make manual detection inefficient for detecting all of the oscillating regions. An algorithm is presented that automates the detection of areas of the solar atmosphere that support spatially extended oscillations. The algorithm identifies areas in the solar atmosphere whose oscillation content is described by a single, dominant oscillation within a user-defined frequency range. The method is based on Bayesian spectral analysis of time series and image filtering. A Bayesian approach sidesteps the need for an a-priori noise estimate to calculate rejection criteria for the observed signal, and it also provides estimates of oscillation frequency, amplitude, and noise, and the error in all of these quantities, in a self-consistent way. The algorithm also introduces the notion of quality measures to those regions for which a positive detection is claimed, allowing for simple post-detection discrimination by the user. The algorithm is demonstrated on two Transition Region and Coronal Explorer (TRACE) datasets, and comments regarding its suitability for oscillation detection in SDO are made.

Ireland, J.↗

Statistical Estimation of Strain Using Spatial Correlation Functions

Ex-situ estimation of strains from deformed micrographs is not possible as there are no persistent features which can be tracked. Two point spatial statistics enable the rigorous quantification of spatial patterns in heterogeneous media. In this paper, we propose a novel method for estimating strains directly from dissimilar micrographs using a continuum mechanics approach. Rather than operating directly on images from sequential frames, as is done in digital image correlation, we operate on different microstructure realizations. This is made possible by comparing the spatial autocorrelation maps of deformed and undeformed micrographs rather than direct comparison of images. Additionally, a Bayesian framework is proposed for quantifying uncertainty. We first illustrate the efficacy of this method on speckle pattern images from digital image correlation experiments. Then, we demonstrate that the method is capable of operating on dissimilar micrographs using deformed synthetic binary microstructures. Finally, we present a case study on polycrystalline additively manufactured 316L deformed via tension. The proposed method works well and we discuss implications and limitations of the presented work.

36 MATERIALS SCIENCE↗

Lowering the computational barrier: Partially Bayesian neural networks for transparency in medical imaging AI

Deep Neural Networks (DNNs) can provide clinicians with fast and accurate predictions that are highly valuable for high-stakes medical decision-making, such as in brain tumor segmentation and treatment planning. However, these models largely lack transparency about the uncertainty in their predictions, potentially giving clinicians a false sense of reliability that may lead to grave consequences in patient care. Growing calls for Transparent and Responsible AI have promoted Uncertainty Quantification (UQ) to capture and communicate uncertainty in a systematic and principled manner. However, traditional Bayesian UQ methods remain prohibitively costly for large, million-dimensional tumor segmentation DNNs such as the U-Net. In this work, we discuss a computationally-efficient UQ approach via the partially Bayesian neural networks (pBNN). In pBNN, only a single layer, strategically selected based on gradient-based sensitivity analysis, is targeted for Bayesian inference. We illustrate the effectiveness of pBNN in capturing the full uncertainty for a 7.8-million parameter U-Net. We also demonstrate how practitioners and model developers can use the pBNN's predictions to better understand the model's capabilities and behavior.

97 MATHEMATICS AND COMPUTING↗

Bayesian Approach for Determining Microlens System Properties with High-angular resolution Follow-up Imaging

We present the details of the Bayesian analysis of the planetary microlensing event MOA-2016-BLG-227, whose excess flux is likely due to a source/lens companion or an unrelated ambient star, as well as of the assumed prior distributions. Furthermore, we apply this method to four reported planetary events, MOA-2008-BLG-310, MOA2011-BLG-293, OGLE-2012-BLG-0527, and OGLE-2012-BLG-0950, where adaptive optics observations have detected excess flux at the source star positions. For events with small angular Einstein radii, our lens mass estimates are more uncertain than those of previous analyses, which assumed that the excess was due to the lens. Our predictions for MOA-2008-BLG-310 and OGLE-2012-BLG-0950 are consistent with recent results on these events obtained via Keck and Hubble Space Telescope observations when the source star is resolvable from the lens star. For events with small angular Einstein radii, we find that it is generally difficult to conclude whether the excess flux comes from the host star. Therefore, it is necessary to identify the lens star by measuring its proper motion relative to the source star to determine whether the excess flux comes from the lens star. Even without such measurements, our method can be used to statistically test the dependence of the planet-hosting probability on the stellar mass.

Naoki Koshimoto↗

A Sensitive Search for Supernova Emission Associated with the Extremely Energetic and Nearby GRB 221009A

We report observations of the optical counterpart of the long gamma-ray burst GRB 221009A. Due to the extreme rarity of being both nearby (z = 0.151) and highly energetic (E ϒ,iso ≥ 10 54 erg), GRB 221009A offers a unique opportunity to probe the connection between massive star core collapse and relativistic jet formation across a very broad range of γ-ray properties. Adopting a phenomenological power-law model for the afterglow and host galaxy estimates from high-resolution Hubble Space Telescope imaging, we use Bayesian model comparison techniques to determine the likelihood of an associated supernova (SN) contributing excess flux to the optical light curve. Though not conclusive, we find moderate evidence (K Bayes =10 1.2 for the presence of an additional component arising from an associated SN, SN 2022xiw, and find that it must be substantially fainter (<67% as bright at the 99% confidence interval) than SN 1998bw. Given the large and uncertain line-of-sight extinction, we attempt to constrain the SN parameters (M Ni , M ej and E KE ) under several different assumptions with respect to the host galaxy's extinction. We find properties that are broadly consistent with previous GRB-associated SNe: M Ni = 0.05–0.25 M ⊙ , M ej = 3.5–11.1 M ⊙ , and E KE = (1.6–5.2) × 10 52 erg. We note that these properties are weakly constrained due to the faintness of the SN with respect to the afterglow and host emission, but we do find a robust upper limit on M Ni of M Ni < 0.36 M ⊙ . Given the tremendous range in isotropic gamma-ray energy release exhibited by GRBs (seven orders of magnitude), the SN emission appears to be decoupled from the central engine in these systems.

Core-collapse supernovae↗

Bayesian Analysis of the Detection Performance of the Lightning Imaging Sensors

Identical Lightning Imaging Sensors aboard the Tropical Rainfall Measuring Mission satellite (TRMM LIS, 1998-2015) and International Space Station (ISS LIS, 2017-present) have collectively provided over two decades of lightning observations over the global tropics, with ISS LIS extending coverage into the mid-latitudes. Quantifying the detection performance of both LIS sensors is a necessary step toward generating a LIS climatological record and accurately combining LIS data with lightning detections from other sensors and networks. We compare lightning observations from both LIS sensors with reference sources including the Geostationary Lightning Mapper (GLM) and ground-based networks operated by Earth Networks (the Earth Networks Total Lightning Network [ENTLN] and Earth Networks Global Lightning Network [ENGLN]) and Vaisala (the National Lightning Detection Network [NLDN] and Global Lightning Dataset [GLD360]). Instead of a relative detection efficiency (RDE) approach that involves assuming perfect performance of the reference sensor, we employ a Bayesian approach to estimate the upper limit of the absolute detection efficiency (ADE) of each sensor being analyzed. The results of this Bayesian analysis illustrate the geographical pattern of ADE as well as its diurnal cycle and yearly evolution, reflecting the growth of the reference networks over time.

Katrina Virts↗

A deep learning approach to fast analysis of collective Thomson scattering spectra

Fast analysis of collective Thomson scattering ion acoustic wave features using a deep convolutional neural network model is presented. The network was trained from spectra to predict the plasma parameters, including ion velocities, population fractions, and ion and electron temperatures. A fully kinetic particle-in-cell simulation was used to model a laboratory astrophysics experiment and simulate a diagnostic image of the ion acoustic wave feature. Network predictions were compared with Bayesian inference of the plasma model parameters for both the simulated and experimentally measured images. Both approaches were fairly accurate predicting the simulated image and the network predictions matched a good portion of the Bayesian results for the experimentally measured image. The Bayesian approach is more robust to noise and motivates future work to train deep learning models with realistic noise. The advantage of the deep learning model is making thousands of predictions in a few hundred milliseconds, compared to a few seconds to minutes per prediction for the optimization and Bayesian approaches presented here. The results demonstrate promising capabilities of deep learning models to analyze Thomson data orders of magnitude faster than conventional methods when using the neural network for standalone analysis. If more rigorous analysis is needed, neural network predictions can be used to quickly initialize other optimization methods and increase chances of success. This is especially useful when the dataset becomes very large or highly dimensional and manually refining initial conditions for the entire dataset are no longer tractable.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Physics-based reward driven image analysis in microscopy

The rise of electron microscopy has expanded our ability to acquire nanometer and atomically resolved images of complex materials. The resulting vast datasets are typically analyzed by human operators, an intrinsically challenging process due to the multiple possible analysis steps and the corresponding need to build and optimize complex analysis workflows. We present a methodology based on the concept of a Reward Function coupled with Bayesian Optimization, to optimize image analysis workflows dynamically. The Reward Function is engineered to closely align with the experimental objectives and broader context and is quantifiable upon completion of the analysis. Here, cross-section, high-angle annular dark field (HAADF) images of ion-irradiated (Y, Dy)Ba 2 Cu 3 O 7–δ thin-films were used as a model system. The reward functions were formed based on the expected materials density and atomic spacings and used to drive multi-objective optimization of the classical Laplacian-of-Gaussian (LoG) method. These results can be benchmarked against the DCNN segmentation. This optimized LoG* compares favorably against DCNN in the presence of the additional noise. We further extend the reward function approach towards the identification of partially-disordered regions, creating a physics-driven reward function and action space of high-dimensional clustering. We pose that with correct definition, the reward function approach allows real-time optimization of complex analysis workflows at much higher speeds and lower computational costs than classical DCNN-based inference, ensuring the attainment of results that are both precise and aligned with the human-defined objectives.

47 OTHER INSTRUMENTATION↗

Physics Discovery in Nanoplasmonic Systems via Autonomous Experiments in Scanning Transmission Electron Microscopy

Abstract Physics‐driven discovery in an autonomous experiment has emerged as a dream application of machine learning in physical sciences. Here, this work develops and experimentally implements a deep kernel learning (DKL) workflow combining the correlative prediction of the target functional response and its uncertainty from the structure, and physics‐based selection of acquisition function, which autonomously guides the navigation of the image space. Compared to classical Bayesian optimization (BO) methods, this approach allows to capture the complex spatial features present in the images of realistic materials, and dynamically learn structure–property relationships. In combination with the flexible scalarizer function that allows to ascribe the degree of physical interest to predicted spectra, this enables physical discovery in automated experiment. Here, this approach is illustrated for nanoplasmonic studies of nanoparticles and experimentally implemented in a truly autonomous fashion for bulk‐ and edge plasmon discovery in MnPS 3 , a lesser‐known beam‐sensitive layered 2D material. This approach is universal, can be directly used as‐is with any specimen, and is expected to be applicable to any probe‐based microscopic techniques including other STEM modalities, scanning probe microscopies, chemical, and optical imaging.

42 ENGINEERING↗

Exoplanet Biosignatures: At the Dawn of a New Era of Planetary Observations

The rapid rate of discoveries of exoplanets has expanded the scope of the science possible for the remote detection of life beyond Earth. The Exoplanet Biosignatures Workshop-Without-Walls (EBWWW) held in 2016 engaged the international scientific community across diverse scientific disciplines, to assess the state of the science and technology in the search for life on exoplanets, and to identify paths for progress. The workshop activities resulted in five (5) major review papers which provide: 1) an encyclopedic review of known and proposed biosignatures and models used to ascertain them; 2) an in-depth review of O2 as a biosignature, rigorously examining the nuances of false positives and negatives for evidence of life; 3) a Bayesian framework to comprehensively organize current understanding to quantify confidence in biosignature assessments; 4) an extension of that Bayesian framework in anticipation of increasing planetary data and novel concepts of biosignatures, and 5) a review of the upcoming telescope capabilities to characterize exoplanets and their environment. Because of the immense content of these review papers, this summary provides a guide to their complementary scope and highlights salient features. Strong themes that emerged from the workshop were that biosignatures must be interpreted in the context of their environment, and that frameworks must be developed to link diverse forms of scientific understanding of that context to quantify the likelihood that a biosignature has been observed. Models are needed to explore the parameter space where measurements will be widespread but sparse in detail. Given the technological prospects for large ground-based telescopes and direct imaging from space-based observatories, the detection of atmospheric signatures of a few potentially habitable planets may come before 2030.

spectral imaging↗

Sparse Data Machine Learning Integration with Theory, Experiment and Uncertainty Quantification: Process-Structure-Property-Performance of Friction Deformation Processing

Computer vision and deep learning tools that advance the ability to establish processing-structure-property-performance (PSPP) relations are presented. The Bayesian binning method for image segmentation enables quantitative analysis of microstructural features in an automated way, while the analysis of shapes and relative orientation of these features reveals local deformation maps indicative of both, material flow and residual stresses due to materials processing. The deep learning method leads to the previous knowledge agnostic mapping of empirically observed microstructural zones in friction stir welding (FSW) process and synthetic microstructure generation capability that is statistically equivalent to experimentally collected data.

97 MATHEMATICS AND COMPUTING↗

orbitize! v3: Orbit fitting for the High-contrast Imaging Community

orbitize! is a package for Bayesian modeling of the orbital parameters of resolved binary objects from time series measurements. It was developed with the needs of the high-contrast imaging community in mind, and has since also become widely used in the binary star community. A generic orbitize! use case involves translating relative astrometric time series, optionally combined with radial velocity or astrometric time series, into a set of derived orbital posteriors. This paper is published alongside the release of orbitize! version 3.0, which has seen significant enhancements in functionality and accessibility since the release of version 1.0 (Blunt et al., 2020).

Sarah Blunt↗