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At least 343 records · Page 19
All sourcesNASA NTRSDOE OSTI
NASA NTRS2016

Validation of Cloud Parameters Derived from Geostationary Satellites, AVHRR, MODIS, and VIIRS Using SatCORPS Algorithms

Validation is a key component of remote sensing that can take many different forms. The NASA LaRC Satellite ClOud and Radiative Property retrieval System (SatCORPS) is applied to many different imager datasets including those from the geostationary satellites, Meteosat, Himiwari-8, INSAT-3D, GOES, and MTSAT, as well as from the low-Earth orbiting satellite imagers, MODIS, AVHRR, and VIIRS. While each of these imagers have similar sets of channels with wavelengths near 0.65, 3.7, 11, and 12 micrometers, many differences among them can lead to discrepancies in the retrievals. These differences include spatial resolution, spectral response functions, viewing conditions, and calibrations, among others. Even when analyzed with nearly identical algorithms, it is necessary, because of those discrepancies, to validate the results from each imager separately in order to assess the uncertainties in the individual parameters. This paper presents comparisons of various SatCORPS-retrieved cloud parameters with independent measurements and retrievals from a variety of instruments. These include surface and space-based lidar and radar data from CALIPSO and CloudSat, respectively, to assess the cloud fraction, height, base, optical depth, and ice water path; satellite and surface microwave radiometers to evaluate cloud liquid water path; surface-based radiometers to evaluate optical depth and effective particle size; and airborne in-situ data to evaluate ice water content, effective particle size, and other parameters. The results of comparisons are compared and contrasted and the factors influencing the differences are discussed.

Minnis, P.↗
NASA NTRS1992

Preliminary dynamic tests of a flight-type ejector

A thrust augmenting ejector was tested to provide experimental data to assist in the assessment of theoretical models to predict duct and ejector fluid-dynamic characteristics. Eleven full-scale thrust augmenting ejector tests were conducted in which a rapid increase in the ejector nozzle pressure ratio was effected through a unique facility, bypass/burst-disk subsystem. The present work examines two cases representative of the test performance window. In the first case, the primary nozzle pressure ration (NPR) increased 36 percent from one unchoked (NPR = 1.29) primary flow condition to another (NPR = 1.75) over a 0.15 second interval. The second case involves choked primary flow conditions, where a 17 percent increase in primary nozzle flowrate (from NPR = 2.35 to NPR = 2.77) occurred over approximately 0.1 seconds. Although the real-time signal measurements support qualitative remarks on ejector performance, extracting quantitative ejector dynamic response was impeded by excessive aerodynamic noise and thrust stand dynamic (resonance) characteristics. It does appear, however, that a quasi-steady performance assumption is valid for this model with primary nozzle pressure increased on the order of 50 lb(sub f)/s. Transient signal treatment of the present dataset is discussed and initial interpretations of the results are compared with theoretical predictions for a similar Short Takeoff and Vertical Landing (STOVL) ejector model.

Drummond, Colin K.↗
NASA NTRS2020

Kenya Food Security & Agriculture II: Utilizing NASA Earth Observations to Enhance Drought Warning Systems and Develop Capacity to Use the RHEAS Model in Kenya

Twenty-three counties in Kenya experience frequent drought, which damages agricultural productivity and threatens the health and well being of millions. NASA DEVELOP partnered with NASA SERVIR, the Regional Centre for Mapping of Resources for Development (RCMRD) and Kenya’s National Drought Management Authority (NDMA) to enhance drought-detection capacity using NASA Earth observations. Currently, the NDMA publishes monthly Early Warning Bulletins with drought conditions for each arid or semi-arid county in Kenya. These bulletins utilize the Vegetation Condition Index (VCI) from the Moderate Resolution ImagingSpectroradiometer (MODIS) as well as a variety of biophysical, social and economic drought indicators, but do not allow for advanced forecasting. To improve drought-monitoring capabilities, the team created a Combined Drought Indicator (CDI) using the Regional Hydrologic Extremes Assessment System (RHEAS) model and data from Aqua and Terra MODIS and the National Centers for Environmental Prediction. The CDI combined precipitation anomalies, soil moisture anomalies, evaporative stress, and VCI according to weights determined by principal component analysis. To evaluate the performance of the CDI across Kenya, the team compiled a dataset of drought events from historical reports and the NDMA’s records. Results suggested that the CDI detected drought earlier thanVCI alone. However, more validation is needed to ensure that the CDI accurately and consistently detects drought earlier than current warning systems. In order to better understand the behavior of individual indices and the potential for earlier drought detection, the team also conducted a time-lag analysis. The team found that VCI responds to drought, on average, one month later than most other indices included in the CDI, suggesting that incorporating additional indices could improve early drought warning systems in Kenya.

Food Security & Agriculture↗
NASA NTRS2022

Design of Materials with Alchemite

Machine learning models that establish the relationships between materials processing and properties can enable inverse design of materials through active learning. Alchemite is a commercial software that can perform inverse materials design on sparse data. Here we evaluate Alchemite’s performance on a dataset of shape memory alloys and a dataset of heat exchangers compared to baseline random forest models. Alchemite had higher accuracy when making predictions on sparse data and was more accurate or nearly as accurate as random forests on complete datasets while also quantifying uncertainty. The software was also used to suggest processing steps and design parameters to optimize properties and performance; however, physical validation of the suggested design parameters was beyond the scope of this work. Several useful design insights were gained about the impact of the design parameters on properties and performance including the importance of dopant choice and amount for shape memory alloys and the importance of height and weight on the thermal resistance of heat exchangers.

Machine learning↗
NASA NTRSDate not supplied

Transcriptomics-based Machine Learning Analysis Predicts Space-Exposed Murine Livers

Limited sample sizes, high data dimensionality, and sensitivity to technical and biological variability of next generation sequencing (NGS), typically limits machine learning (ML) approaches in spaceflight studies that include radiation effects. However, pooling smaller studies while addressing intra- and inter-study variabilities allows for ML predictive modeling. Here, integration methods were applied to whole transcriptome shotgun sequencing (RNA-seq) data from six mouse liver GeneLab datasets (GLDS) (n ranging from 6 to 39 samples) from with a total of 81 spaceflight and ground-control samples to determine top features (i.e. genes) relevant to spaceflight including the effect of radiation exposure. RNASeq counts were normalized for each study, then merged and scaled across all datasets. Data dimensionality was reduced using a minimum redundancy maximum relevance (MRMR) methodology. Redundancy and relevance were computed using the Pearson correlation and F-statistic, respectively. The top 100 MRMR features were used to predict spaceflight vs. ground-control samples using Random Forest (RF), Support Vector Machine (SVM), and Linear Discriminant Analysis (LDA) classifiers with 5-fold cross validation (CV). Principal component analysis (PCA) on the complete feature set versus the MRMR features shows separation between spaceflight samples and ground controls (Figure 1A). The ML-based gene sets were compared against differential gene expression results obtained with DESeq2 from individual GLDS. Using all features or randomly sampled subsets at matching set sizes with MRMR, a maximum classifier accuracy of 69% was shown on the test set over 5 folds. For all classifiers, CV training using at least the top 30 MRMR genes show minimum 89% accuracy and 0.95 AUC value on the test set over 5 folds (Figure 1B). Baseline set analysis on differentially expressed genes (DEGs) identified using padj ≤ 0.05 show 295 DEGs that overlap at least two studies and 13 DEGs that overlap three studies (Figure 1C). Set analysis between the top 100 MRMR features and the DEGs showed 47 genes that overlap at least one study and 24 genes that overlap two studies. Over-representation analysis showed overlapping biological processes related to fatty acid and lipid metabolism which may indicate these processes in the response to spaceflight stressors. MRMR feature selection for the selected ML methods improve performance relative to a classifier built on all features or randomly sampled subsets. Permutation feature importance within the decorrelated MRMR features showed concordance in feature ranking between ML methods. A challenge of applying ML methods across heterogeneous NGS data is accounting for signal:noise. Here, signal validation across studies was shown by intersecting sets between top MRMR genes and DEGs from DESeq2 analysis. Non-intersecting sets introduce opportunity to explore genes relevant to differentiating space flight exposed groups and implementing ML methods across existing NGS datasets may overcome sample size limitations.

Machine Learning↗
NASA NTRSDate not supplied

Transcriptomics-based Machine Learning (ML) Analysis Predicts Space-Exposed Murine Livers

Limited sample sizes, high data dimensionality, and sensitivity to technical and biological variability of next generation sequencing (NGS), typically limits machine learning (ML) approaches in spaceflight studies that include radiation effects. However, pooling smaller studies while addressing intra- and inter-study variabilities allows for ML predictive modeling. Here, integration methods were applied to whole transcriptome shotgun sequencing (RNA-seq) data from six mouse liver GeneLab datasets (GLDS) (n ranging from 6 to 39 samples) from with a total of 81 spaceflight and ground-control samples to determine top features (i.e. genes) relevant to spaceflight including the effect of radiation exposure. RNASeq counts were normalized for each study, then merged and scaled across all datasets. Data dimensionality was reduced using a minimum redundancy maximum relevance (MRMR) methodology. Redundancy and relevance were computed using the Pearson correlation and F-statistic, respectively. The top 100 MRMR features were used to predict spaceflight vs. ground-control samples using Random Forest (RF), Support Vector Machine (SVM), and Linear Discriminant Analysis (LDA) classifiers with 5-fold cross validation (CV). Principal component analysis (PCA) on the complete feature set versus the MRMR features shows separation between spaceflight samples and ground controls (Figure 1A). The ML-based gene sets were compared against differential gene expression results obtained with DESeq2 from individual GLDS. Using all features or randomly sampled subsets at matching set sizes with MRMR, a maximum classifier accuracy of 69% on the test set over 5 folds. For all classifiers, CV training using at least the top 30 MRMR genes show minimum 89% accuracy and 0.95 AUC value on the test set over 5 folds (Figure 1B). Baseline set analysis on differentially expressed genes (DEGs) identified using padj ≤ 0.05 show 295 DEGs that overlap at least two studies and 13 DEGs that overlap three studies (Figure 1C). Set analysis between the top 100 MRMR features and the DEGs showed 47 genes that overlap at least one study and 24 genes that overlap two studies. Over-representation analysis showed overlapping biological processes related to fatty acid and lipid metabolism which may indicate these processes in the response to spaceflight stressors. MRMR feature selection for the selected ML methods improve performance relative to a classifier built on all features or randomly sampled subsets. Permutation feature importance within the decorrelated MRMR features showed concordance in feature ranking between ML methods. A challenge of applying ML methods across heterogeneous NGS data is accounting for signal:noise. Here, signal validation across studies was shown by intersecting sets between top MRMR genes and DEGs from DESeq2 analysis. Non-intersecting sets introduce opportunity to explore genes relevant to differentiating space flight exposed groups and implementing ML methods across existing NGS datasets may overcome sample size limitations.

Machine Learning↗
NASA NTRSDate not supplied

Transcriptomics-based Machine Learning Analysis Predicts Space-Exposed Murine Livers

Limited sample sizes, high data dimensionality, and sensitivity to technical and biological variability of next generation sequencing (NGS), typically limits machine learning (ML) approaches in spaceflight studies that include radiation effects. However, pooling smaller studies while addressing intra- and inter-study variabilities allows for ML predictive modeling. Here, integration methods were applied to whole transcriptome shotgun sequencing (RNA-seq) data from six mouse liver GeneLab datasets (GLDS) (n ranging from 6 to 39 samples) from with a total of 81 spaceflight and ground-control samples to determine top features (i.e. genes) relevant to spaceflight including the effect of radiation exposure. RNASeq counts were normalized for each study, then merged and scaled across all datasets. Data dimensionality was reduced using a minimum redundancy maximum relevance (MRMR) methodology. Redundancy and relevance were computed using the Pearson correlation and F-statistic, respectively. The top 100 MRMR features were used to predict spaceflight vs. ground-control samples using Random Forest (RF), Support Vector Machine (SVM), and Linear Discriminant Analysis (LDA) classifiers with 5-fold cross validation (CV). Principal component analysis (PCA) on the complete feature set versus the MRMR features shows separation between spaceflight samples and ground controls (Figure 1A). The ML-based gene sets were compared against differential gene expression results obtained with DESeq2 from individual GLDS. Using all features or randomly sampled subsets at matching set sizes with MRMR, a maximum classifier accuracy of 69% was shown on the test set over 5 folds. For all classifiers, CV training using at least the top 30 MRMR genes show minimum 89% accuracy and 0.95 AUC value on the test set over 5 folds (Figure 1B). Baseline set analysis on differentially expressed genes (DEGs) identified using padj ≤ 0.05 show 295 DEGs that overlap at least two studies and 13 DEGs that overlap three studies (Figure 1C). Set analysis between the top 100 MRMR features and the DEGs showed 47 genes that overlap at least one study and 24 genes that overlap two studies. Over-representation analysis showed overlapping biological processes related to fatty acid and lipid metabolism which may indicate these processes in the response to spaceflight stressors. MRMR feature selection for the selected ML methods improve performance relative to a classifier built on all features or randomly sampled subsets. Permutation feature importance within the decorrelated MRMR features showed concordance in feature ranking between ML methods. A challenge of applying ML methods across heterogeneous NGS data is accounting for signal:noise. Here, signal validation across studies was shown by intersecting sets between top MRMR genes and DEGs from DESeq2 analysis. Non-intersecting sets introduce opportunity to explore genes relevant to differentiating space flight exposed groups and implementing ML methods across existing NGS datasets may overcome sample size limitations.

Machine Learning↗
NASA NTRSDate not supplied

A Survey of ISS and Visiting Vehicle Returned Surfaces for Environmental Characterization and Computer Model Development

The Orbital Debris Engineering Model (ORDEM) developed by the NASA Orbital Debris Program Office (ODPO) is a data-driven model — extensive radar, optical, laboratory, and in situ measurement data sets have been used to build the model since its earliest versions. A salient aspect of professional software development is the verification and validation (V&V) process. Verification answers the question “Is the model built correctly?” while validation addresses the question “Did we build the correct model?” Less extensive, reserved, or independent data sets serve the validation requirement. Due to the dynamic nature of the orbital debris environment, it is critical to use contemporaneous data sources that represent the current environment to support ORDEM development and validation. ORDEM has utilized in situ data collected from Space Shuttle and Hubble Space Telescope surface inspections, now over a decade old. This historical dataset is fundamental for providing baseline in situ measurement data for sizes between 10 to 300 microns, but new data sources are being evaluated using returned surfaces from or near the International Space Station (ISS). This paper reviews a general microscopic survey of ISS soft goods, the Pressurized Mating Adapter 2 (PMA-2) blanket, and a limited-scope feasibility study conducted on the Space Exploration Technologies Corporation (SpaceX) Dragon capsule’s Thermal Protection System (TPS) material. The PMA-2 blanket, exposed to the space environment between 09 July 2013 and 25 February 2015, is an approximately 3.7 m2-area blanket composed of a betacloth outer layer and multiple ballistic fabric inner layers. The SpaceX Cargo Dragon capsule regularly visited the ISS from 2012 through 2020 and potentially provides a timely and well-characterized source of data for modeling purposes. The capsule’s lateral surfaces use SpaceX Proprietary Ablative Material (SPAM) TPS material, a syntactic foam, for thermal management during all mission phases. Seven SPAM extracted samples have been analyzed to date. This paper will provide an overview of the characterization completed for impact features by size, depth, impactor diameter, and the impactor residues chemical analyses, allowing a differentiation between micrometeoroids and orbital debris and a categorization by mass density and density class. Impactor diameter is estimated using damage equations generated from ground-based hypervelocity impact testing. The orbital debris impactors are compared to the current ORDEM 3.2 model of the environment at ISS altitudes. We briefly discuss the meteoroid impactors, including constituents and mass densities, in the general context of current models.

Phillip Anz-meador↗
NASA NTRSDate not supplied

A Survey of ISS and Visiting Vehicle Returned Surfaces for Environmental Characterization and Computer Model Development

The Orbital Debris Engineering Model (ORDEM) developed by the NASA Orbital Debris Program Office (ODPO) is a data-driven model — extensive radar, optical, laboratory, and in situ measurement data sets have been used to build the model since its earliest versions. A salient aspect of professional software development is the verification and validation (V&V) process. Verification answers the question “Is the model built correctly?” while validation addresses the question “Did we build the correct model?” Less extensive, reserved, or independent data sets serve the validation requirement. Due to the dynamic nature of the orbital debris environment, it is critical to use contemporaneous data sources that represent the current environment to support ORDEM development and validation. ORDEM has utilized in situ data collected from Space Shuttle and Hubble Space Telescope surface inspections, now over a decade old. This historical dataset is fundamental for providing baseline in situ measurement data for sizes between 10 to 300 microns, but new data sources are being evaluated using returned surfaces from or near the International Space Station (ISS). This paper reviews a general microscopic survey of ISS soft goods, the Pressurized Mating Adapter 2 (PMA-2) blanket, and a limited-scope feasibility study conducted on the Space Exploration Technologies Corporation (SpaceX) Dragon capsule’s Thermal Protection System (TPS) material. The PMA-2 blanket, exposed to the space environment between 09 July 2013 and 25 February 2015, is an approximately 3.7 m2-area blanket composed of a betacloth outer layer and multiple ballistic fabric inner layers. The SpaceX Cargo Dragon capsule regularly visited the ISS from 2012 through 2020 and potentially provides a timely and well-characterized source of data for modeling purposes. The capsule’s lateral surfaces use SpaceX Proprietary Ablative Material (SPAM) TPS material, a syntactic foam, for thermal management during all mission phases. Seven SPAM extracted samples have been analyzed to date. This paper will provide an overview of the characterization completed for impact features by size, depth, impactor diameter, and the impactor residues chemical analyses, allowing a differentiation between micrometeoroids and orbital debris and a categorization by mass density and density class. Impactor diameter is estimated using damage equations generated from ground-based hypervelocity impact testing. The orbital debris impactors are compared to the current ORDEM 3.2 model of the environment at ISS altitudes. We briefly discuss the meteoroid impactors, including constituents and mass densities, in the general context of current models.

Phillip Anz-Meador↗
NASA NTRS2015

Investigation of Spiral Bevel Gear Condition Indicator Validation via AC-29-2C Combining Test Rig Damage Progression Data with Fielded Rotorcraft Data

This is the final of three reports published on the results of this project. In the first report, results were presented on nineteen tests performed in the NASA Glenn Spiral Bevel Gear Fatigue Test Rig on spiral bevel gear sets designed to simulate helicopter fielded failures. In the second report, fielded helicopter HUMS data from forty helicopters were processed with the same techniques that were applied to spiral bevel rig test data. Twenty of the forty helicopters experienced damage to the spiral bevel gears, while the other twenty helicopters had no known anomalies within the time frame of the datasets. In this report, results from the rig and helicopter data analysis will be compared for differences and similarities in condition indicator (CI) response. Observations and findings using sub-scale rig failure progression tests to validate helicopter gear condition indicators will be presented. In the helicopter, gear health monitoring data was measured when damage occurred and after the gear sets were replaced at two helicopter regimes. For the helicopters or tails, data was taken in the flat pitch ground 101 rotor speed (FPG101) regime. For nine tails, data was also taken at 120 knots true airspeed (120KTA) regime. In the test rig, gear sets were tested until damage initiated and progressed while gear health monitoring data and operational parameters were measured and tooth damage progression documented. For the rig tests, the gear speed was maintained at 3500RPM, a one hour run-in was performed at 4000 in-lb gear torque, than the torque was increased to 8000 in-lbs. The HUMS gear condition indicator data evaluated included Figure of Merit 4 (FM4), Root Mean Square (RMS) or Diagnostic Algorithm 1(DA1), + 3 Sideband Index (SI3) and + 1 Sideband Index (SI1). These were selected based on their sensitivity in detecting contact fatigue damage modes from analytical, experimental and historical helicopter data. For this report, the helicopter dataset was reduced to fourteen tails and the test rig data set was reduced to eight tested gear sets. The damage modes compared were separated into three cases. For case one, both the gear and pinion showed signs of contact fatigue or scuffing damage. For case two, only the pinion showed signs of contact fatigue damage or scuffing. Case three was limited to the gear tests when scuffing occurred immediately after the gear run-in. Results of this investigation highlighted the importance of understanding the complete monitored systems, for both the helicopter and test rig, before interpreting health monitoring data. Further work is required to better define these two systems that include better state awareness of the fielded systems, new sensing technologies, new experimental methods or models that quantify the effect of system design on CI response and new methods for setting thresholds that take into consideration the variance of each system.

spiral bevel gears↗
NASA NTRS2020

Kenya Food Security & Agriculture II: Utilizing NASA Earth Observations to Enhance Drought Warning Systems and Develop Capacity to Use the RHEAS Model in Kenya

Twenty-three counties in Kenya experience frequent drought, which damages agricultural productivity and threatens the health and well being of millions. NASA DEVELOP partnered with NASA SERVIR, the Regional Centre for Mapping of Resources for Development (RCMRD) and Kenya’s National Drought Management Authority (NDMA) to enhance drought-detection capacity using NASA Earth observations. Currently, the NDMA publishes monthly Early Warning Bulletins with drought conditions for each arid or semi-arid county in Kenya. These bulletins utilize the Vegetation Condition Index (VCI) from the Moderate Resolution Imaging Spectroradiometer (MODIS) as well as a variety of biophysical, social and economic drought indicators, but do not allow for advanced forecasting. To improve drought-monitoring capabilities, the team created a Combined Drought Indicator (CDI) using the Regional Hydrologic Extremes Assessment System (RHEAS) model and data from Aqua and Terra MODIS and the National Centers for Environmental Prediction.The CDI combined precipitation anomalies, soil moisture anomalies, evaporative stress, and VCI according to weights determined by principal component analysis. To evaluate the performance of the CDI across Kenya, the team compiled a dataset of drought events from historical reports and the NDMA’s records. Results suggested that the CDI detected drought earlier than VCI alone. However, more validation is needed to ensure that the CDI accurately and consistently detects drought earlier than current warning systems. In order to better understand the behavior of individual indices and the potential for earlier drought detection, the team also conducted a time-lag analysis. The team found that VCI responds to drought, on average, one month later than most other indices included in the CDI, suggesting that incorporating additional indices could improve early drought warning systems in Kenya.

Food Security & Agriculture↗
NASA NTRSDate not supplied

NASA GeneLab RNASeq Consensus Pipeline: A Nextflow Implementation

The NASA GeneLab project (genelab.nasa.gov) seeks to accelerate space biology research through cataloging and democratizing omics data. Since raw omics data is largely inaccessible to non-bioinformaticians, GeneLab works with the scientific community to develop standard processing pipelines to generate and publish processed data. Unlike raw data, processed data has greater immediate value to a wide range of users with varying technical backgrounds and computational capabilities. Standardizing processing workflows is essential to match the pace of raw data generation, ensure reproducibility, and enable standardized processed data for comparison across datasets. Previously, GeneLab developed a standardized pipeline for processing RNAseq data, referred to as the ‘GeneLab RNAseq Consensus Pipeline (RCP)’, in collaboration with GeneLab’s Analysis Working Groups. The work presented here is a Nextflow implementation of GeneLab’s RCP that automates and accelerates data processing of RNASeq datasets hosted on GeneLab. In addition to the core data processing, the workflow also includes staging of GeneLab raw data and a robust verification and validation (V&V) program that runs after each processing step to identify errors in real-time, stop additional downstream computation, and preserve computational resources. The workflow, including the staging and V&V functionality, is open source for others to reuse and modify at https://github.com/nasa/GeneLab_Data_Processing/tree/master/RNAseq.

Jonathan Dejesus Oribello↗
NASA NTRSDate not supplied

NASA GeneLab RNASeq Consensus Pipeline: A Nextflow Implementation

The NASA GeneLab project (genelab.nasa.gov) seeks to accelerate space biology research through cataloging and democratizing omics data. Since raw omics data is largely inaccessible to non-bioinformaticians, GeneLab works with the scientific community to develop standard processing pipelines to generate and publish processed data. Unlike raw data, processed data has greater immediate value to a wide range of users with varying technical backgrounds and computational capabilities. Standardizing processing workflows is essential to match the pace of raw data generation, ensure reproducibility, and enable standardized processed data for comparison across datasets. Previously, GeneLab developed a standardized pipeline for processing RNAseq data, referred to as the ‘GeneLab RNAseq Consensus Pipeline (RCP)’, in collaboration with GeneLab’s Analysis Working Groups. The work presented here is a Nextflow implementation of GeneLab’s RCP that automates and accelerates data processing of RNASeq datasets hosted on GeneLab. In addition to the core data processing, the workflow also includes staging of GeneLab raw data and a robust verification and validation (V&V) program that runs after each processing step to identify errors in real-time, stop additional downstream computation, and preserve computational resources. The workflow, including the staging and V&V functionality, is open source for others to reuse and modify at https://github.com/nasa/GeneLab_Data_Processing/tree/master/RNAseq.

Jonathan D Oribello↗
NASA NTRSDate not supplied

Developing Open-Source Training Materials for AI/ML and Space Biological Sciences Using NASA Cloud-Based Data

Artificial Intelligence (AI) and Machine Learning (ML) has gained significant traction in the biological and biomedical research fields, in part due to a culture of open data sharing and reuse. AI/ML methodology is well-suited to recognize and predict biological patterns from high-dimensional next-generation sequencing data (e.g. whole genome sequencing, transcriptomic sequencing), as well as from biological or medical imaging data (e.g. microscopy, computed tomography, ultrasound, magnetic resonance imaging, radiography). These methodologies hold particular promise for space biosciences research and automated space health monitoring systems. However, there are key considerations for properly training, validating, and testing a machine learning model in biological research or clinical application. Inexperienced researchers can produce models that perform poorly outside of the training dataset. Open Science principles such as data sharing and open-source code must go hand-in-hand with publicly available, high-quality training curricula in best practices, with modules centered on real-life scientific use cases and data so future AI/ML practitioners gain experience on real problems. Here we present the development of open-source training materials for AI/ML and space biosciences, as part of the NASA Transform to Open Science Training (TOPST) initiative. We develop 4 independent training programs, focused on the following topics: 1) Fundamentals of Machine Learning and Space Biosciences Domain, 2) Open Science, Artificial Intelligence, and Ethical Best Practices for Data Sharing and Analysis, 3) Using AI/ML Classification to Identify Gene Networks Affected By Space Exposure in Mouse Liver, and 4) Using Neural Networks to Find DNA Damage Patterns in Immune Cells after Radiation. All programs leverage cloud-based NASA biological datasets. The curriculum we present will enable worldwide access to training in AI/ML and scientific analysis.

James Casaletto↗
NASA NTRS2008

Spectrally Resolved Flux Derived from Collocated AIRS and CERES Observations and its Application in Model Validation: Clear-Sky Over the Tropic Oceans - Part I

Spectrally resolved outgoing IR flux, the integrand of the outgoing longwave radiation (OLR), has its unique value in evaluating model simulations. Here we describe an algorithm of deriving such clear-sky outgoing spectral flux through the whole IR region from the collocated Atmospheric Infrared Sounder (AIRS) and the Clouds & the Earth's Radiant Energy System (CERES) measurements over the tropical oceans. Based on the scene types and corresponding angular distribution models (ADMs) used in the CERES Single Satellite Footprint (SSF) dataset, spectrally-dependent ADMs are developed and used to estimate the spectral flux at each AIRS channel. A multivariate linear prediction scheme is then used to estimate spectral fluxes at frequencies not covered by the AIRS instrument. The whole algorithm is validated using synthetic spectra as well as the CERES OLR measurements. Using the GFDL AM2 model simulation as a case study, the application of the derived clear-sky outgoing spectral flux in model evaluation is illustrated. By comparing the observed and simulated spectral flux in 2004, compensating errors in the simulated OLR from different absorption bands can be revealed, so does the errors from frequencies within a given absorption band. Discrepancies between the simulated and observed spatial distributions and seasonal evolutions of the spectral fluxes at different spectral ranges are further discussed. The methodology described in this study can be applied to other surface types as well as cloudy-sky observations and corresponding model evaluations.

Huang, Xianglei↗
NASA NTRS2014

Profiling the SO2 Plume from Volcan Turrialba: Ticosonde Balloon Measurements Compared with OMI and OMPS Retrievals

The summit of Volcan Turrialba (elev. 3340 m) lies less than 50 km upstream in the prevailing easterlies from the Ticosonde balloon launch site at San Jose, Costa Rica, where ECC ozone sondes have been launched regularly since 2005. In 2006 we began to see telltale notches in the ozone profiles in the altitude range between 2 and 6 km. Given the proximity of Turrialba, it seemed likely that SO2 in the volcano's plume was interfering in the chemical reaction in the ECC ozone sonde used to detect ozone. In early 2010, fumarolic activity in the Turrialba crater increased strongly, and the profile notches in our soundings increased in frequency as well, consistent with this hypothesis. In February 2012 we tested a dual ECC sonde system, where an additional sonde is flown on the same payload using a selective SO2 filter. The difference of the measurements in the dual sonde is a direct measure of the amount of SO2 encountered. This first dual sonde passed through the plume, and the data indicated a tropospheric SO2 column of 1.4 DU, comparing favorably with a total column of 1.7 DU in the OMI 3-km linear fit (LF) product at the sonde profile location and at nearly the same time. We are now launching dual sondes on a regular basis with 18 launches in the first 12 months through July 2014; 11 of these have detectable SO2 signals. These soundings have great potential for validation of the Aura OMI and the Suomi-NPP OMPS retrievals of SO2. Here we present the sonde measurements and compare them with two satellite datasets: the Aura OMI Linear Fit (LF) product and the Suomi-NPP OMPS Principal Components Analysis (PCA) boundary layer product. The PCA algorithm reduces retrieval noise and artifacts by more accurately accounting for various interferences in SO2 retrievals such as O3 absorption and rotational Raman scattering. The comparisons with the in situ observations indicate a significant improvement of the PCA algorithm in capturing relatively weak volcanic SO2 signals.

sondes↗
NASA NTRS2019

Local and Downstream Relationships Between Labrador Sea Water Volume and North Atlantic Meridional Overturning Circulation Variability

While it has generally been understood that the production of Labrador Sea Water (LSW) impacts the Atlantic meridional overturning circulation (MOC), this relationship has not been explored extensively nor validated against observations. To explore this relationship, a suite of global ocean and ocean–sea-ice models forced by the same interannually-varying atmospheric dataset, varying in resolution from non-eddy permitting to eddy-permitting (1°–1/4°), is analyzed to investigate the local and downstream relationships between LSW formation and the MOC on interannual to decadal time scales. While all models display a strong relationship between changes in the LSW volume and the MOC in the Labrador Sea, this relationship degrades considerably downstream of the Labrador Sea. In particular, there is no consistent pattern among the models in the North Atlantic subtropical basin over interannual to decadal time scales. Furthermore, the strong response of the MOC in the Labrador Sea to LSW volume changes in that basin may be biased by the overproduction of LSW in many models compared to observations. This analysis shows that changes in LSW volume in the Labrador Sea cannot be clearly and consistently linked to a coherent MOC response across latitudes over interannual to decadal time scales in ocean hindcast simulations of the last half-century. Similarly, no coherent relationships are identified between the MOC and the Labrador Sea mixed layer depth or the density of newly formed LSW across latitudes or across models over interannual to decadal time scales.

Feili Li↗
NASA NTRS2020

Detecting Seasonal Ice Dynamics in Satellite Images

Fully understanding how glaciers respond to environmental change will require new methods to help us identify the onset of ice acceleration events and observe how dynamic signals propagate within glaciers. In particular, observations of ice dynamics on seasonal timescales may offer insights into how a glacier interacts with various forcing mechanisms throughout the year. The task of generating continuous ice velocity time series that resolve seasonal variability is made more difficult by a spotty satellite record that contains no optical observations throughout the dark, polar winters. Furthermore, velocities obtained by feature tracking are marked by high noise when image pairs are separated by short time intervals and contain no direct insights into variability that occurs between images separated by long time intervals. In this paper, we describe a method of analyzing optical or SAR-derived feature-tracked velocities to characterize the magnitude and timing of seasonal ice dynamic variability. Our method is agnostic to data gaps and is able to recover climatological average winter velocities regardless of the availability of direct observations during winter. Using characteristic image acquisition times and error distributions from Antarctic image pairs in the ITS_LIVE dataset, we generate synthetic ice velocity time series, then apply our method to recover imposed magnitudes of seasonal variability within ±1.4 m yr−1. We then validate the techniques by comparing our results to GPS data collected on Russell Glacier in Greenland. The methods presented here may be applied to better understand how ice dynamic signals propagate on seasonal timescales, and what mechanisms control the flow of the world’s ice.

Chad A. Greene↗