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At least 343 records · Page 19

Photothermal alternative to device fabrication using atomic precision advanced manufacturing techniques

The attachment of dopant precursor molecules to depassivated areas of hydrogen-terminated silicon templated with a scanning tunneling microscope (STM) has been used to create electronic devices with sub-nanometer precision, typically for quantum physics demonstrations, and to dope silicon past the solid-solubility limit, with potential applications in microelectronics and plasmonics. However, this process, which we call atomic precision advanced manufacturing (APAM), currently lacks the throughput required to develop sophisticated applications because there is no proven scalable hydrogen lithography pathway. Here, we demonstrate and characterize an APAM device workflow where STM lithography has been replaced with photolithography. An ultraviolet laser is shown to locally heat silicon controllably above the temperature required for hydrogen depassivation. STM images indicate a narrow range of laser energy density where hydrogen has been depassivated, and the surface remains well-ordered. A model for photothermal heating of silicon predicts a local temperature which is consistent with atomic-scale STM images of the photo-patterned regions. Finally, a simple device made by exposing photo-depassivated silicon to phosphine is found to have a carrier density and mobility similar to that produced by similar devices patterned by STM.

42 ENGINEERING↗

Single-node Partitioned-Memory for Huge Graph Analytics: Cost and Performance Trade-offs

Nonvolatile memory NVDIMMs, available as Intel Optane, are less expensive than DRAM and bring large byte-addressable storage within reach to many applications. Evaluations on graph analytics have shown promising performance only when DRAM is used as a hardware cache (Memory mode). An open question is whether graph applications can exploit Optane and DRAM directly (AppDirect mode) and achieving better-than-DRAM average bandwidth and run times. We evaluate Optane as a volatile pool on two large-scale graph applications with very different computational patterns, Grappolo and Ripples. We show that AppDirect mode can deliver better-than-DRAM performance, by allocating data structures to Optane and DRAM according to their access characteristics, resulting in higher average memory bandwidth and lower average latency. Memory mode provides DRAM-competitive performance with capacity equal to persistent memory. We demonstrate occasional 4x improvement using the latest AppDirect option and frequently observe competitive performance between Optane AppDirect Memory modes and DRAM.

Ghosh, Sayan↗

Massive Trajectory Data Based on Patterns of Life

Individual human location trajectory and check-in data have been the driving force for human mobility research in recent years. However, existing human mobility datasets are very limited in size and representativeness. For example, one of the largest and most commonly used datasets of individual human location trajectories, GeoLife, captures fewer than two hundred individuals. To help fill this gap, this Data and Resources paper leverages an existing data generator based on fine-grained simulation of individual human patterns of life to produce large-scale trajectory, check-in, and social network data. In this simulation, individual human agents commute between their home and work locations, visit restaurants to eat, and visit recreational sites to meet friends. We provide large datasets of months of simulated trajectories for two example regions in the United States: San Francisco and New Orleans. In addition to making the datasets available, we also provide instructions on how the simulation can be used to re-generate data, thus allowing researchers to generate the data locally without downloading prohibitively large files.

Amiri, Hossein↗

Removing the Effects of Tropical Dynamics from North Pacific Climate Variability

Teleconnections from the Tropics energize variations of the North Pacific climate, but detailed diagnosis of this relationship has proven difficult. Simple univariate methods, such as regression on El Niño-Southern Oscillation (ENSO) indices, may be inadequate since the key dynamical processes involved -- including ENSO diversity in the Tropics, re-emergence of mixed layer thermal anomalies, and oceanic Rossby wave propagation in the North Pacific -- have a variety of overlapping spatial and temporal scales. Here we use a multivariate Linear Inverse Model to quantify tropical and extra-tropical multi-scale dynamical contributions to North Pacific variability, in both observations and CMIP6 models. In observations, we find that the Tropics are responsible for almost half of the seasonal variance, and almost three quarters of the decadal variance, along the North American coast and within the subtropical front region northwest of Hawaii. SST anomalies that are generated by local dynamics within the Northeast Pacific have much shorter time scales, consistent with transient weather forcing by Aleutian low anomalies. Variability within the Kuroshio-Oyashio Extension (KOE) region is considerably less impacted by the Tropics, on all time scales. Consequently, without tropical forcing the dominant pattern of North Pacific variability would be a KOE pattern, rather than the Pacific Decadal Oscillation (PDO). In contrast to observations, most CMIP6 historical simulations produce North Pacific variability that maximizes in the KOE region, with amplitude significantly higher than observed. Correspondingly, the simulated North Pacific in all CMIP6 models is shown to be relatively insensitive to the Tropics, with a dominant spatial pattern generally resembling the KOE pattern, not the PDO.

54 ENVIRONMENTAL SCIENCES↗

Self-Organization of Plasma-Material Interfaces

The primary goals of the project are a) improve the understanding of transport processes, chemical reactions and plasma-driven self-organization such as stratification and filamentation, formation of anode spots, liquid droplets ejection from cathodes, and plasma electrolysis, b) utilize and share among the project participants computational tools developed by the participants to understand plasma-based surface functionalization and plasma-enabled pattern nucleation in a wide range of scales from nano- to millimeters, and c) use experimental methods and facilities available at the University of Alabama in Huntsville (UAH) and Sandia National Laboratories (SNL) to understand and control plasma processes, reaction pathways and the electric nature of self-organization of the plasma-exposed interface structures.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Synergistic effects of climate warming and atmospheric nutrient deposition on the alpine lake ecosystem in the south-eastern Tibetan Plateau during the Anthropocene

Alpine lakes on the Tibetan Plateau are highly sensitive to global change and have been recognized as the sentinel of climate warming. However, anthropogenic impacts in populated area are migrating to these remote areas via transporting particulate nutrients by atmospheric deposition. Whether warming and nutrient deposition would impose additive or synergistic effects on the lake ecosystem remains largely unknown. Here, we present multi-proxy (sediment pigment and geochemistry) records during the past two centuries at the Cuoqia Lake in the southeast Tibetan Plateau. We found that the lake exhibited rapid ecological changes since 1980 AD characterized by an increase in primary productivity due to algal proliferation, with more rapid growth of green algae and diatoms. These findings are in concert with many other lakes (e.g., Moon Lake and Shade Co) in the same area, suggesting a consistent pattern of ecosystem evolution at the region scale. Statistical analyses suggested that nutrient deposition and climate warming were strongly associated with the variations in primary productivity and algae composition, exerting both individual and interactive effects. In addition, scenario analyses with a well-established process-based ecosystem model further revealed that the two factors not only individually, but also synergistically promoted the algal proliferation and community succession. Such synergy is evident in that the effect of lake warming would be more pronounced under higher nutrient deposition scenario, which is potentially due to higher temperature-driven mineralization in warmer conditions, and higher efficiency of nutrient utilization under enhanced light availability attributing to declining ice thickness and duration in cold seasons. Overall, our study proposes the existence and quantifies the synergistic impacts of climate warming and anthropogenic activities in driving the ecological changes in remote alpine lakes on the Tibetan Plateau. The lake ecological consequences driven by individual factor would be worsen by such synergy, so that we cannot predict the lake ecosystem trajectory in the future based on each factor separately, and more efforts than previously expected would be needed for the lake restoration and management.

Zhang, Can↗

Bringing 2D Eclipse Mapping out of the Shadows with Leave-one-out Cross Validation

Abstract Eclipse mapping is a technique for inferring 2D brightness maps of transiting exoplanets from the shape of an eclipse light curve. With JWST’s unmatched precision, eclipse mapping is now possible for a large number of exoplanets. However, eclipse mapping has only been applied to two planets, and the nuances of fitting eclipse maps are not yet fully understood. Here, we use Leave-one-out Cross Validation (LOO-CV) to investigate eclipse mapping, with application to a JWST NIRISS/SOSS observation of the ultrahot Jupiter WASP-18b. LOO-CV is a technique that provides insight into the out-of-sample predictive power of models on a data-point-by-data-point basis. We show that constraints on planetary brightness patterns behave as expected, with large-scale variations driven by the phase-curve variation in the light curve and smaller-scale structures constrained by the eclipse ingress and egress. For WASP-18b we show that the need for higher model complexity (smaller-scale features) is driven exclusively by the shape of the eclipse ingress and egress. We use LOO-CV to investigate the relationship between planetary brightness map components when mapping under a positive-flux constraint to better understand the need for complex models. Finally, we use LOO-CV to understand the degeneracy between the competing “hot spot” and “plateau” brightness map models of WASP-18b, showing that the plateau model is driven by the ingress shape and the hot spot model is driven by the egress shape, but preference for neither model is due to outliers or unmodeled signals. Based on this analysis, we make recommendations for the use of LOO-CV in future eclipse-mapping studies.

79 ASTRONOMY AND ASTROPHYSICS↗

Magnetic Field Strength Effects on Nucleosynthesis from Neutron Star Merger Outflows

Abstract Magnetohydrodynamic turbulence drives the central engine of post-merger remnants, potentially powering both a nucleosynthetically active disk wind and the relativistic jet behind a short gamma-ray burst. We explore the impact of the magnetic field on this engine by simulating three post-merger black hole accretion disks using general relativistic magnetohydrodynamics with Monte Carlo neutrino transport, in each case varying the initial magnetic field strength. We find increasing ejecta masses associated with increasing magnetic field strength. We find that a fairly robust main r -process pattern is produced in all three cases, scaled by the ejected mass. Changing the initial magnetic field strength has a considerable effect on the geometry of the outflow and hints at complex central engine dynamics influencing lanthanide outflows. We find that actinide production is especially sensitive to magnetic field strength, with the overall actinide mass fraction calculated at 1 Gyr post-merger increasing by more than a factor of 6 with a tenfold increase in magnetic field strength. This hints at a possible connection to the variability in actinide enhancements exhibited by metal-poor, r -process-enhanced stars.

79 ASTRONOMY AND ASTROPHYSICS↗

Comparing the Photometric Calibration of DESI Imaging and Gaia Synthetic Photometry

Abstract The relative photometric calibration errors in the DESI Legacy Imaging Surveys (LS), which are used for DESI target selection, can leave imprints on the DESI target densities and bias the resulting cosmological measurements. We characterize the LS calibration systematics by comparing the LS stellar photometry with Gaia DR3 synthetic photometry. We find the stellar photometry of LS DR9 and Gaia has an rms difference of 4.7, 3.7, 4.4 mmag in DECam grz bands, respectively, when averaged over an angular scale of 27 ′ . There are distinct spatial patterns in the photometric offset resembling the Gaia scan patterns (most notably in the synthesized g -band) which indicate systematics in the Gaia spectrophotometry, as well as honeycomb patterns due to LS calibration systematics. We also find large and smoothly varying photometric offsets at decl. < −29.°25 in LS DR9 which are fixed in DR10.

Zhou, Rongpu (ORCID:0000000153814372)↗

A mountain-induced moist baroclinic wave test case for the dynamical cores of atmospheric general circulation models

Idealized test cases for the dynamical cores of atmospheric general circulation models are informative tools to assess the accuracy of the numerical designs and investigate the general characteristics of atmospheric motions. A new test case is introduced that is built upon a baroclinically unstable base state with an added orographic barrier. The topography is analytically prescribed and acts as a trigger of both baroclinic Rossby waves and inertia–gravity waves on a rotating, regular-sized planet. Both dry and idealized moist configurations are suggested. The latter utilizes the Kessler warm-rain precipitation scheme. The test case enhances the complexity of the existing test suite hierarchy and focuses on the impacts of two midlatitudinal mountain ridges on the circulation. Selected simulation examples from four dynamical cores are shown. These are the Spectral Element and Finite Volume dynamical cores, which are part of the National Center for Atmospheric Research (NCAR) Community Earth System Model (CESM), versions 2.1.3 and 2.2, and the Cubed-Sphere Finite Volume dynamical cores, which is new to CESM version 2.2. In addition, the Model for Prediction Across Scales (MPAS) is tested. The overall flow patterns agree well in the four dynamical cores, but the details can vary greatly. The examples highlight the broad palette of use cases for the test case and reveal physics–dynamics coupling issues.

58 GEOSCIENCES↗

Computational approaches to model X-ray photon correlation spectroscopy from molecular dynamics

X-ray photon correlation spectroscopy (XPCS) allows for the resolution of dynamic processes within a material across a wide range of length and time scales. X-ray speckle visibility spectroscopy (XSVS) is a related method that uses a single diffraction pattern to probe ultrafast dynamics. Interpretation of the XPCS and XSVS data in terms of underlying physical processes is necessary to establish the connection between the macroscopic responses and the microstructural dynamics. To aid the interpretation of the XPCS and XSVS data, we present a computational framework to model these experiments by computing the X-ray scattering intensity directly from the atomic positions obtained from molecular dynamics simulations. We compare the efficiency and accuracy of two alternative computational methods: the direct method computing the intensity at each diffraction vector separately, and a method based on fast Fourier transform that computes the intensities at all diffraction vectors at once. Furthermore, the computed X-ray speckle patterns capture the density fluctuations over a range of length and time scales and are shown to reproduce the known properties and relations of experimental XPCS and XSVS for liquids.

36 MATERIALS SCIENCE↗

Data and scripts associated with “Allometric scaling of hyporheic respiration across basins in the Pacific Northwest USA"

This data package is associated with the publication “Allometric scaling of hyporheic respiration across basins in the Pacific Northwest USA” submitted to JGR-Biogeosciences (Regier et al. 2025).This study used reach-scale modeled estimates of hyporheic aerobic respiration made by the River Corridor Model (Fang et al. 2020) and watershed characteristics across the Willamette and Yakima River basins to explore potential allometric scaling (i.e., power-law relationships between size and function) of cumulative hyporheic respiration across catchment-to-basin scales. Scaling was explored quantitatively via the R2, slope, and y-intercept of relationships between cumulative hyporheic respiration and watershed area, divided into hyporheic exchange flux (HEF) quantiles. We also explored relationships between allometric scaling and other watershed characteristics through linear regression, spatial patterns, and mutual information analyses. Our results also suggest variability of hyporheic respiration allometry for middle exchange flux quantiles, and in relation to land-cover. Our findings provide initial evidence that allometric scaling may be useful for predicting hyporheic biogeochemical dynamics across watersheds from reach to basin scales. This data package is associated with the GitHub repository found at https://github.com/peterregier/rc_wrb_yrb_scaling. The data package is organized into several key directories. The “data” folder contains multiple CSV files, including landscape heterogeneity, scaling analysis, and watershed boundary data. The “figures” folder has all figure files in both PDF and PNG formats. Core analysis scripts and figure generation scripts are in the “scripts” directory, systematically numbered for sequential execution. The root directory includes essential project files; please see the file ending in “flmd.csv” for a list and description of all files contained in this data package and the file ending in “dd.csv” for data dictionaries used to describe tabular column headers.

54 ENVIRONMENTAL SCIENCES↗

Local-thermal-gradient and large-scale-circulation impacts on turbine-height wind speed forecasting over the Columbia River Basin

Abstract. We investigate the sensitivity of turbine-height wind speed forecast to initial condition (IC) uncertainties over the Columbia River Gorge (CRG) and Columbia River Basin (CRB) for two typical weather phenomena, i.e., local-thermal-gradient-induced marine air intrusion and a cold frontal passage. Four types of turbine-height wind forecast anomalies and their associated IC uncertainties related to local thermal gradients and large-scale circulations are identified using the self-organizing map (SOM) technique. The four SOM types are categorized into two patterns, each accounting for half of the ensemble members. The first pattern corresponds to IC uncertainties that alter the wind forecast through a modulating weather system, which produces the strongest wind anomalies in the CRG and CRB. In the second pattern, the moderate uncertainties in local thermal gradient and large-scale circulation jointly contribute to wind forecast anomaly. We analyze the cross section of wind and temperature anomalies through the gorge to explore the evolution of vertical features of each SOM type. The turbine-height wind anomalies induced by large-scale IC uncertainties are more concentrated near the front. In contrast, turbine-height wind anomalies induced by the local IC thermal uncertainties are found above the surface thermal anomalies. Moreover, the wind forecast accuracy in the CRG and CRB is limited by IC uncertainties in a few specific regions, e.g., the 2 m temperature within the basin and large-scale circulation over the northeast Pacific around 140∘ W.

17 WIND ENERGY↗

At the interfaces of the hydrologic sciences: Connecting water, elements, ecosystems, and people through the major contributions of Dr. Emily Bernhardt

Here, in this paper, we describe the major contributions of Professor Emily Bernhardt to the hydrologic sciences. Dr. Bernhardt’s work addresses how carbon, nutrient, and contaminant dynamics respond to a wide range of environmental perturbations that alter hydrologic dynamics within and connectivity among ecosystems. Her research leverages intensive and extensive field sampling, experimental manipulations, macroscale data harmonization and exploration, and continental to global-scale synthesis activities to uncover key drivers and patterns of the impacts human perturbations have on water and elemental cycles. Dr. Bernhardt’s research program is defined by her ability to ask questions and use approaches that explicitly consider connectivity and interfaces in a variety of ways. Here, we highlight significant contributions from Dr. Bernhardt’s work, organized by connectivity, interfaces, and interactions among and across (1) elemental cycles, (2) ecosystems, (3) watersheds, (4) scales, and (5) disciplines. We conclude with a section on Dr. Bernhardt’s impact on the hydrologic sciences and beyond through her exceptional dedication to mentorship, engagement, and service.

58 GEOSCIENCES↗

Earth microbial co-occurrence network reveals interconnection pattern across microbiomes

Microbial interactions shape the structure and function of microbial communities; microbial association networks in specic environments have been widely developed to explore these complex systems, but their wired pattern across microbiomes in various environments at the global scale remains unexplored. Here we have inferred an Earth microbial association network from a communal catalogue with 23,595 samples and 12,646 exact sequence variants from 14 environments in the Earth Microbiome Project dataset. Results: This non-random scale-free Earth microbial association network consisted of 8 taxonomy distinct modules linked with dierent environments, which featured environment specic microbial associations. Dierent topological features of subnetworks inferred from datasets trimmed into uniform size indicate distinct association patterns in the microbiomes of various environments. The proportions of specialist edges, which ranged from 43.0% to 65.7%, highlight that environmental specic microbial associations are essential features of microbiomes in various environments. Based on edge-overlap similarity, the microbiomes of various environments were clustered into two groups, which were mainly bridged by the microbiomes of plant and animal surface. Acidobacteria Gp2 and Nisaea were identied as hubs in most of subnetworks. Negative edges proportions ranged from 1.9% in the soil subnetwork to 48.9% the non-saline surface subnetwork, suggesting various environments experience distinct intensities of competition or niche dierentiation. Conclusion: This investigation provides a new resource for examining Earth microbial association patterns across environments and emphasizes the network perspective for comprehensively understanding unique microbiome features. Keywords: Association pattern; Earth microbiomes; Genelist edges; Network hubs; Negative associations; Specialist edges; Topological properties

59 BASIC BIOLOGICAL SCIENCES↗

Self-organized patterns at the plasma–liquid anode interface in a helium glow discharge: temporal development and mechanisms

Self-organization at the plasma–liquid anode interface is a commonly observed phenomenon for atmospheric pressure glow plasmas, resulting in patterns with distinctive shapes such as circular ring, star-shaped, and gear-like structures, depending primarily on the discharge current and solution conductivity. Recent studies have shown that the electrode gap distance, solute used for liquid anode solution, and gas composition can also significantly impact pattern formation. Nonetheless, an overarching model or explanation of the key underlying mechanisms consistent with all experimentally observed trends is not yet reported. We propose a key underlying mechanism enabling pattern formation motivated by a detailed parametric study of pattern formation complemented by the temporal development of patterns and consistent with all observed trends. Pattern formation was observed to be on a time scale of 100 μs, similar to the time scales of gas heating and evaporation. It was found that a minimum water evaporation rate of (3.5 ± 0.5) × 10 –6 kg s –1 and reduced electric field in the positive column of 16.6 ± 0.4 Td is required for pattern formation in the investigated cases irrespective of solution conductivity and gas composition for NaCl solutions. Nonetheless, the presence of cations for which the corresponding metal atom has a low ionization energy was identified as a necessary condition for pattern formation. Furthermore, the reported results suggest that the presence of a small amount of metal atoms in the gas phase with low ionization energy enhances the overall ionization rate in the near anode region which triggers pattern formation.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

A Regional Phase Amplitude Model of 2-D Attenuation for North America

We analyzed seismic attenuation patterns across the North America using over 70,000,000 Lg wave amplitudes recorded by the various networks at frequencies of 0.1-32 Hz. Our inversion solved for laterally varying attenuation, site terms, moments, and apparent stress following Phillips et al., (2016). The inversion was anchored by independently constrained: corner frequencies (via coda spectral ratios) to control the attenuation-stress tradeoff and moment measurements of teleseismic (GCMT, USGS) and regional (St. Louis University and UC Berkeley) earthquakes to provided absolute scaling. The quality factor (Q) shows clear regional patterns: low values in coastal, volcanic, and tectonically active regions, and high values in stable areas like the Great Plains and major plateaus throughout North America. These 2-D Q models enable improved regional source characterization, magnitude estimation, and yield determination.

58 GEOSCIENCES↗

Statistical patterns of theory uncertainties

A comprehensive uncertainty estimation is vital for the precision program of the LHC. While experimental uncertainties are often described by stochastic processes and well-defined nuisance parameters, theoretical uncertainties lack such a description. We study uncertainty estimates for cross-section predictions based on scale variations across a large set of processes. We find patterns similar to a stochastic origin, with accurate uncertainties for processes mediated by the strong force, but a systematic underestimate for electroweak processes. We propose an improved scheme, based on the scale variation of reference processes, which reduces outliers in the mapping from leading order to next-to-leading-order in perturbation theory.

Ghosh, Aishik↗