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At least 343 records · Page 19

Evolution in vitro of an RNA enzyme with altered metal dependence

The Tetrahymena group I ribozyme catalyses a sequence-specific phosphodiester cleavage reaction on an external RNA oligonucleotide substrate in the presence of a divalent metal cation cofactor. This reaction proceeds readily with either Mg2+ or Mn2+, but no detectable reaction has been reported when other divalent cations are used as the sole cofactor. Cations such as Ca2+, Sr2+ and Ba2+ can stabilize the correct folded conformation of the ribozyme, thereby partially alleviating the Mg2+ or Mn2+ requirement. But catalysis by the ribozyme involves coordination of either Mg2+ or Mn2+ at the active site, resulting in an overall requirement for one of these two cations. Here we use an in vitro evolution process to obtain variants of the Tetrahymena ribozyme that are capable of cleaving an RNA substrate in reaction mixtures containing Ca2+ as the divalent cation. These findings extend the range of different chemical environments available to RNA enzymes and illustrate the power of in vitro evolution in generating macromolecular catalysts with desired properties.

NASA Discipline Exobiology↗

Measuring the Internal Structure and Physical Conditions in Star and Planet Forming Clouds Cores: Towards a Quantitative Description of Cloud Evolution

This grant funds a research program to use infrared extinction measurements to probe the detailed structure of dark molecular cloud cores and investigate the physical conditions which give rise to star and planet formation. The goals of this program are to acquire, reduce and analyze deep infrared and molecular-line observations of a carefully selected sample of nearby dark clouds in order to determine the detailed initial conditions for star formation from quantitative measurements of the internal structure of starless cloud cores and to quantitatively investigate the evolution of such structure through the star and planet formation process.

Lada, Charles J.↗

Energy conversion at liquid/liquid interfaces: artificial photosynthetic systems

This chapter focuses on multielectron reactions in organized assemblies of molecules at the liquid/liquid interface. We describe the thermodynamic and kinetic parameters of such reactions, including the structure of the reaction centers, charge movement along the electron transfer pathways, and the role of electric double layers in artificial photosynthesis. Some examples of artificial photosynthesis at the oil/water interface are considered, including water photooxidation to the molecular oxygen, oxygen photoreduction, photosynthesis of amphiphilic compounds and proton evolution by photochemical processes.

Non-NASA Center↗

A definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics

The number of small subunit rRNA sequences is now great enough that the three domains Archaea, Bacteria and Eucarya (Woese et al., 1990) can be reliably defined in terms of their sequence "signatures". Approximately 50 homologous positions (or nucleotide pairs) in the small subunit rRNA characterize and distinguish among the three. In addition, the three can be recognized by a variety of nonhomologous rRNA characters, either individual positions and/or higher-order structural features. The Crenarchaeota and the Euryarchaeota, the two archaeal kingdoms, can also be defined and distinguished by their characteristic compositions at approximately fifteen positions in the small subunit rRNA molecule.

NASA Program Exobiology↗

Spectroscopic diagnostics of organic chemistry in the protostellar environment

A combination of astronomical observations, laboratory studies, and theoretical modelling is necessary to determine the organic chemistry of dense molecular clouds. We present spectroscopic evidence for the composition and evolution of organic molecules in protostellar environments. The principal reaction pathways to complex molecule formation by catalysis on dust grains and by reactions in the interstellar gas are described. Protostellar cores, where warming of dust has induced evaporation of icy grain mantles, are excellent sites in which to study the interaction between gas phase and grain-surface chemistries. We investigate the link between organics that are observed as direct products of grain surface reactions and those which are formed by secondary gas phase reactions of evaporated surface products. Theory predicts observable correlations between specific interstellar molecules, and also which new organics are viable for detection. We discuss recent infrared observations obtained with the Infrared Space Observatory, laboratory studies of organic molecules, theories of molecule formation, and summarise recent radioastronomical searches for various complex molecules such as ethers, azaheterocyclic compounds, and amino acids.

Ethers/analysis/chemical synthesis/chemistry↗

Fossils, molecules and embryos: new perspectives on the Cambrian explosion

The Cambrian explosion is named for the geologically sudden appearance of numerous metazoan body plans (many of living phyla) between about 530 and 520 million years ago, only 1.7% of the duration of the fossil record of animals. Earlier indications of metazoans are found in the Neoproterozic; minute trails suggesting bilaterian activity date from about 600 million years ago. Larger and more elaborate fossil burrows appear near 543 million years ago, the beginning of the Cambrian Period. Evidence of metazoan activity in both trace and body fossils then increased during the 13 million years leading to the explosion. All living phyla may have originated by the end of the explosion. Molecular divergences among lineages leading to phyla record speciation events that have been earlier than the origins of the new body plans, which can arise many tens of millions of years after an initial branching. Various attempts to date those branchings by using molecular clocks have disagreed widely. While the timing of the evolution of the developmental systems of living metazoan body plans is still uncertain, the distribution of Hox and other developmental control genes among metazoans indicates that an extensive patterning system was in place prior to the Cambrian. However, it is likely that much genomic repatterning occurred during the Early Cambrian, involving both key control genes and regulators within their downstream cascades, as novel body plans evolved.

Non-NASA Center↗

A balloon-borne 102-cm telescope for far-infrared astronomy

In the early 1970's, the Smithsonian Astrophysical Observatory and the University of Arizona engaged in a cooperative program to develop a balloon-borne 102-cm telescope capable of carrying out far infrared (40 to 250 micron) observations of astronomical interest above the earth's atmosphere. Since 1972, the telescope has flown and successfully recovered a total of nineteen times. Thirteen of the flights produced high-quality astronomical data, resulting in more than 92.5 hours of photometric and spectroscopic observations of numerous objects, such as H 2 regions, dark clouds, molecular clouds, a planetary nebula, a galaxy, the galactic center, the planets, and an asteroid. From the launch site in Palestine, Texas, sources as far south as -50 degrees declination were observed. The balloon-borne telescope was one of the most sensitive instruments ever used for observation in the far infrared region of the spectrum. It was most productive in producing high resolution maps of large areas (typically square degrees) centered on known H 2 regions, molecular clouds, and dark cloud complexes. In many cases, these scans produced the first far infrared maps of these regions, and many new sources were discovered. The results have led to a better understanding of the distribution of gas and dust in these regions, the evolution of H 2 regions, and the processes of star formation in giant molecular clouds. The following topics are presented: (1) the focal plane instrumentation; (2) the history and flight record; (3) scientific results and publications; (4) eduational aspects; and (5) future planes.

Fazio, Giovanni G.↗

Volatile tracers of Martian atmospheric evolution: Present measurement status and requirements for future investigations

One of the most significant contributions to the detailed characterization of the molecular, atomic, and isotopic composition of the Martian atmosphere came from the Viking mass spectrometer experiments. Measurement of the abundance of the noble gases Ne, Ar, Kr, and Xe, as well as major molecular species was achieved together with some of the important isotopic compositions such as N-15/N-14, Ar-36/Ar-40, and others. The isotopic characterization, a key element to an understanding of atmospheric evolution, advanced further with recent measurements of the deuterium/hydrogen (D/H) ratio from HDO as well as the detailed study of gases contained in meteorites thought to be Martian origin.

Mahaffy, Paul↗

Ammonia and nitrogen abundances in comets

Comets consist of pristine material preserved from an earlier galactic epoch. Determination of the molecular, elemental, and isotopic abundances in the dust and volatile components of comet nuclei produce vital clues to the chemical evolution of both interstellar and solar nebula matter. Here the abundances of nitrogen-containing molecules in comets are considered. The molecular abundances of NH3 in four comets are summarized (Tegler 1990, Wyckoff, Tegler, and Engel, 1990). From an inventory of nitrogen-containing compounds (Wyckoff, Engel, and Tegler 1990, Wyckoff, Engel, Womack, Ferro, Tegler and Peterson, 1990), an estimate of the elemental N abundance is also presented.

Wyckoff, Susan↗

Time evolution of interstellar dust and far-infrared luminosity of disk galaxies

The evolution of interstellar dust in disk galaxies is modeled, assuming that dust forms predominantly in molecular clouds associated with star formation. Analytical solutions for the dust abundance in disk galaxies as a function of galaxy age are obtained for the prompt initial enrichment and accretion models of chemical evolution, consistent with observations of the heavy element abundance in the Galaxy. Star formation rates in the disks of galaxies are taken as either constant or decreasing exponentially with time. It is found that the total amount of dust in the early history of galaxies can be up to 4 times the value observed today. The total emission from dust in galaxies is calculated, using an average dust temperature derived from IRAS observations. In the strongly evolving models, the far-infrared luminosity from galaxies can be roughly two orders of magnitude larger than the current value.

Wang, Boqi↗

Observations of IRAS F10214+4724 at the Nobeyama millimeter array

F10214+4724 is an IRAS source at z=2.286 with L(sub FIR) approximately 10(exp 14) solar luminosity. The CO(3-2) emission was detected at the NRAO 12-m telescope, and its molecular gas mass was estimated to be (1-3)x10(exp 11) solar mass. This object is unique and important because it is the first high-z object from which molecular line emission is detected and it enables us to investigate molecular gas content, star forming material, at an early stage of galactic evolution. If IRAS F10214+4724 is a primeval galaxy at the formation process, it is possible the gas has not been collapsed yet to the galactic scale. On the other hand, it is also possible IRAS F10214+4724 is a merging or interacting system like the most of ultra-luminous infrared galaxies. However, since the first detection was made with a medium size single-dish telescope, the precise position, extent, and distribution of the molecular gas had not been determined. The aim of our aperture synthesis observations is therefore to determine position and distribution of molecular gas.

Sakamoto, K.↗

The evolution of ecological tolerance in prokaryotes

The ecological ranges of Archaeobacteria and Eubacteria are constrained by a requirement for liquid water and the physico-chemical stability limits of biomolecules, but within this broad envelope, prokaryotes have evolved adaptations that permit them to tolerate a remarkable spectrum of habitats. Laboratory experiments indicate that prokaryotes can adapt rapidly to novel environmental conditions, yet geological studies suggest early diversification and long-term stasis within the prokaryotic kingdoms. These apparently contradictory perspectives can be reconciled by understanding that, in general, rates and patterns of prokaryotic evolution reflect the developmental history of the Earth's surface environments. Our understanding of modern microbial ecology provides a lens through which our accumulating knowledge of physiology, molecular phylogeny and the Earth's history can be integrated and focussed on the phenomenon of prokaryotic evolution.

NASA Discipline Number 52-30↗

On the massive star-forming capacity of molecular clouds

Assuming that photoionization is the self-limiting process for continued star formation, we estimate the maximum number of massive (OB) stars that can form within a molecular cloud. The most efficient cloud destruction mechanism in the early stages of H II region evolution is the evaporation of the cloud by stars located near the cloud boundary. The maximum number of OB stars is of order 1 per 10(exp 4) solar mass of average molecular gas, or 10 per 10(exp 4) solar mass of dense molecular gas. The resulting star-forming efficiencies within cloud complexes range from 2% to 16% depending on both the location of the stars in the cloud and the details of the initial mass function, with an overall value of about 5% for average molecular gas.

Franco, Jose↗

The Role of Extraterrestrial Materials in the Origin of Life

It has been well established for some time now that C-rich organic materials are relatively common in a number of environments in space. This is known through the telescopic detection of these materials using spectroscopy techniques in the infrared and sub-millimeter wavelength ranges and through the identification of organics in extraterrestrial materials. Extraterrestrial materials in which organics have been found include collected meteorites and interplanetary dust particles, and samples returned by NASA spacecraft from comets. These organics are produced by a variety of astrochemical processes. Despite their abiotic origins, these organic materials of are considerable interest to astrobiology for several reasons. First, organic materials of any composition are important as a means of delivering the elements C, H, O, and N to the surfaces of newly formed planets, and these elements are likely critical to the origin and subsequent evolution of life (certainly for life as we know it). In addition, it is clear that at least a portion of the organics found in space are in the form of molecules that play important roles in modern biology - for example, molecules like amino acids, amphiphiles, quinones, etc. Thus, the delivery of extraterrestrial organics to planetary surfaces brings not only bulk C, H, O, and N, but also molecular complexity in forms that are potentially useful for the origin and early evolution of life. This suggests that the production and delivery of cosmic organic compounds may have played key roles in the origin of life on Earth and, by extension, on other planets in the universe.

Astrochemistry↗

The solar system/interstellar medium connection - Gas phase abundances

Gas-phase abundances in the outer solar system are presented as diagnostics of the interstellar medium at the time of the solar system formation, some 4.55 billion years ago. Possible influences of the thermal and chemical histories of the primitive solar nebula and of the processes which led to the formation and evolution of the outer planets and comets on the elemental and molecular composition of the primordial matter are outlined. The major components of the atmospheres of the outer planets and of the comae of comets are identified, and the cosmogonical and cosmological implications are discussed.

Lutz, Barry L.↗

CO observations of candidates for carbon-rich asymptotic giant branch and post-asymptotic giant branch stars

Circumstellar CO emission has been detected in a number of featureless or weak SiC emission, low color temperature IRAS sources. The CO detections confirm the suggestion that these are either extreme carbon stars, carbon-rich proto-planetary nebulae (PPNs), or carbon-rich planetary nebulae (PNs). We find that the CO emission is relatively stronger for a given luminosity in post-AGB stars than AGB stars, suggesting a more efficient excitation mechanism is at work in the post-AGB phase. One probable post-AGB star was detected in HCN for the first time. The available HCN data suggest a rapid decline in HCN emission after the AGB. Molecular emission is shown to be a useful tracer of the evolution from asymptotic giant branch to the planetary nebula phase.

Volk, Kevin↗

The luminosity functions of embedded stellar clusters. 1: Method of solution and analytic results

We describe a method for computing the history of the luminosity function in a young cluster still forming within a molecular cloud complex. Our method, which utilizes detailed results from stellar evolution theory, assumes that clusters arise from the continuous collapse of dense cloud cores over a protracted period of time. It is also assumed that stars reaching the main sequence are distributed in mass according to a prescribed initial mass function (IMF). We keep track separately of the contributions to the luminosity function from the populations of protostars, pre-main-sequence stars, and main-sequence stars. We derive expressions for the fractional contribution of these populations to both the total number of stars produced and the total cluster luminosity. In our model, the number of protostars rises quickly at first, but then levels off to a nearly constant value, which it maintains until the dispersal of the cloud complex. The number fraction of protostars always decreases with time. Averaged over the life of the parent cloud, this fraction is typically a few percent. The protostar mass distribution can be expressed as an integral over the IMF.

Fletcher, Andre B.↗