Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “model code”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 343 records · Page 19

On infinite tensor networks, complementary recovery and type II factors

We initiate a study of local operator algebras at the boundary of infinite tensor networks, using the mathematical theory of inductive limits. In particular, we consider tensor networks in which each layer acts as a quantum code with complementary recovery, a property that features prominently in the bulk-to-boundary maps intrinsic to holographic quantum error-correcting codes. In this case, we decompose the limiting Hilbert space and the algebras of observables in a way that keeps track of the entanglement in the network. As a specific example, we describe this inductive limit for the holographic Harlow-Pastawski-Preskill-Yoshida code model and relate its algebraic and error-correction features. We find that the local algebras in this model are given by the hyperfinite type II$_\infty$ factor. Next, we discuss other networks that build upon this framework and comment on a connection between type II factors and stabilizer circuits. We conclude with a discussion of multiscale entanglement renormalization ansatz networks in which complementary recovery is broken. We argue that this breaking possibly permits a limiting type III von Neumann algebra, making them more suitable ansätze for approximating subregions of quantum field theories.

holographic dualities↗

DNABERT-S: pioneering species differentiation with species-aware DNA embeddings

SUMMARY: We introduce DNABERT-S, a tailored genome model that develops species-aware embeddings to naturally cluster and segregate DNA sequences of different species in the embedding space. Differentiating species from genomic sequences (i.e. DNA and RNA) is vital yet challenging, since many real-world species remain uncharacterized, lacking known genomes for reference. Embedding-based methods are therefore used to differentiate species in an unsupervised manner. DNABERT-S builds upon a pre-trained genome foundation model named DNABERT-2. To encourage effective embeddings to error-prone long-read DNA sequences, we introduce Manifold Instance Mixup (MI-Mix), a contrastive objective that mixes the hidden representations of DNA sequences at randomly selected layers and trains the model to recognize and differentiate these mixed proportions at the output layer. We further enhance it with the proposed Curriculum Contrastive Learning (C2LR) strategy. Empirical results on 28 diverse datasets show DNABERT-S's effectiveness, especially in realistic label-scarce scenarios. For example, it identifies twice more species from a mixture of unlabeled genomic sequences, doubles the Adjusted Rand Index (ARI) in species clustering, and outperforms the top baseline's performance in 10-shot species classification with just a 2-shot training. AVAILABILITY AND IMPLEMENTATION: Model, codes, and data are publically available at https://github.com/MAGICS-LAB/DNABERT_S.

Zhou, Zhihan↗

Modelling type 1 quasar colours in the era of Rubin and Euclid

We construct a parametric SED model which is able to reproduce the average observed SDSS–UKIDSS–WISE quasar colours to within one-tenth of a magnitude across a wide range of redshift (0 < z < 5) and luminosity (–22 > M i > –29). This model is shown to provide accurate predictions for the colours of known quasars which are less luminous than those used to calibrate the model parameters, and also those at higher redshifts z > 5. Using a single parameter, the model encapsulates an up-to-date understanding of the intra-population variance in the rest-frame ultraviolet and optical emission lines of luminous quasars. At fixed redshift, there are systematic changes in the average quasar colours with apparent i-band magnitude, which we find to be well explained by the contribution from the host galaxy and our parametrization of the emission-line properties. By including redshift as an additional free parameter, the model could be used to provide photometric redshifts for individual objects. For the population as a whole we find that the average emission line and host-galaxy contributions can be well described by simple functions of luminosity which account for the observed changes in the average quasar colours across 18.1 < i AB < 21.5. Finally, we use these trends to provide predictions for quasar colours at the luminosities and redshifts which will be probed by the Rubin Observatory LSST and ESA-Euclid wide survey. The model code is applicable to a wide range of upcoming photometric and spectroscopic surveys, and is made publicly available.

79 ASTRONOMY AND ASTROPHYSICS↗

A forecast for large-scale structure constraints on Horndeski gravity with CO line intensity mapping

Here we consider the potential for line intensity mapping (LIM) of the rotational CO(1-0), CO(2-1), and CO(3-2) transitions to detect deviations from General Relativity from 0 < z < 3 within the framework of a very general class of modified gravity models, called Horndeski’s theories. Our forecast assumes a multitracer analysis separately obtaining information from the matter power spectrum and the first two multipoles of the redshift space distortion power spectrum. To achieve ±0.1 level constraints on the slope of the kinetic gravity braiding and Planck mass evolution parameters, a mm-wave LIM experiment would need to accumulate ≈10 8 –10 9 spectrometre-hours, feasible with instruments that could be deployed in the 2030s. Such a measurement would constrain the parameters of Horndeski’s theory at a level at worst competitive to and at best an order of magnitude tighter than existing constraints from the CMB and LSS. Our modelling code is publicly available.

79 ASTRONOMY AND ASTROPHYSICS↗

Probing the rapid formation of black holes and their Galaxy hosts in QSOs

Using the modelling code x-cigale, we reproduced the spectral energy distributions (SEDs) of 1359 SDSS quasi-stellar objects (QSOs) within the redshift range 0 < z < 4, for which we have NIR/MIR fluxes with the highest quality and spectral data characterizing their supermassive black hole (SMBHs). Consistent with a rapid formation of the host galaxies, the star formation histories (SFHs) have small e-folding, at most 750 Myr using an SFH function for spiral or 1000 Myr using one for elliptical. Above z ∼ 1.6, the two solutions are degenerate, the SEDs being dominated by the active galactic nucleus (AGN) continuum and high star formation rates (SFRs), typical of starburst galaxies, while at lower redshifts the starburst nature of the host, independent from its morphology, is better reproduced by a spiral SFH. In general, the SFR increases with the redshift, the mass of the bulge, the AGN luminosity, and Eddington ratio, suggesting there is no evidence of AGN quenching of star formation. Comparing the specific BH accretion rate (BHAR) with specific SFR, all the QSOs at any redshift trace a linear sequence below the Eddington luminosity, in parallel and above the one-to-one relation, implying that QSOs are in a special phase of evolution during which the growth in mass of their SMBH is more rapid than the growth in mass of their galaxy hosts. This particular phase is consistent with a scenario where the galaxy hosts of QSOs in the past grew in mass more rapidly than their SMBHs, suggesting that a high star formation efficiency during their formation was responsible in limiting their masses.

79 ASTRONOMY AND ASTROPHYSICS↗

Applications of the modified Hulthén-Kohn method for bound and scattering states

We adapt the Hulthén–Kohn method suggested by Efros [Phys. Rev. C 99, 034620 (2019)] for calculating various observables in the continuum and discrete spectrum using two-body interactions in single- and coupled channel systems. We explore the convergence of phase shifts and wave functions as well as the location of S-matrix poles which enables obtaining both resonance and bound state parameters. We find that employing a harmonic oscillator basis, together with an interaction smoothing scheme introduced by Gyarmati et al. [Nucl. Phys. A 326, 119 (1979)], and adopting approximate bound-state solutions for the short-range components of basis wave functions lead to good convergence even with restricted oscillator quanta accessible for modern no-core shell model codes. The adapted Efros method will facilitate ab initio many-body nuclear structure applications.

Nuclear reactions↗

Symplectic machine learning model for fast simulation of space-charge effects

Symplectic simulation of space-charge effects is crucial for the design and operation of high-intensity particle accelerators. Traditional methods for simulating these effects are often computationally expensive, resulting in significant overhead. In this work, we introduce a generative model based on a U-Net architecture within a generative adversarial network framework to efficiently simulate space-charge effects. The model is trained to predict the transverse multiparticle space-charge Hamiltonian, which can be physically computed using a gridless spectral method. The one-step symplectic transverse transfer map for the particles is then obtained by differentiating the predicted Hamiltonian. Benchmarking results demonstrate that this generative model achieves an order of magnitude higher computational efficiency compared to the spectral method, providing a highly efficient alternative for simulating space-charge effects with a large number of particles. By maintaining symplecticity, the model effectively preserves the phase-space structure and mitigates nonphysical errors in long-term simulations. This model has been integrated into jutrack, a novel autodifferentiable accelerator modeling code developed in the julia programming language.

Beam code development & simulation techniques↗

Unified description of the coupled-channels and statistical Hauser-Feshbach nuclear reaction theories for low energy neutron incident reactions

We incorporate the coupled-channels optical model into the statistical Hauser-Feshbach nuclear reaction theory, where the scattering matrix is diagonalized by performing the Engelbrecht-Weidenmüller transformation. This technique has been implemented in the coupled-channels optical model code ECIS by J. Raynal, and we extend this method so that all the open channels in a nucleon-induced reaction on a deformed nucleus can be calculated consistently.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Virtual Time III, Part 1: Unified Virtual Time Synchronization for Parallel Discrete Event Simulation

Algorithms for synchronization of parallel discrete event simulation have historically been divided between conservative methods that require lookahead but not rollback, and optimistic methods that require rollback but not lookahead. In this paper we present a new approach in the form of a framework called Unified Virtual Time (UVT) that unifies the two approaches, combining the advantages of both within a single synchronization theory. Whenever timely lookahead information is available, a logical process (LP) executes conservatively using an irreversible event handler. When lookahead information is not available the LP does not block, as it would in a classical conservative execution, but instead executes optimistically using a reversible event handler. The switch from conservative to optimistic synchronization and back is decided on an event-by-event basis by the simulator, transparently to the model code. UVT treats conservative synchronization algorithms as optional accelerators for an underlying optimistic synchronization algorithm, enabling the speed of conservative execution whenever it is applicable, but otherwise falling back on the generality of optimistic execution. We describe UVT in a novel way, based on fundamental invariants, monotonicity requirements, and synchronization rules. UVT permits zero-delay messages and pays careful attention to tie-handling using superposition. We prove that under fairly general conditions a UVT simulation always makes progress in virtual time. This is Part 1 of a trio of papers describing the UVT framework for PDES, mixing conservative and optimistic synchronization and integrating throttling control.

97 MATHEMATICS AND COMPUTING↗

Virtual Time III, Part 3: Throttling and Message Cancellation

This is Part 3 of a trio of papers that unify in a natural way the two historically distinct parallel discrete event synchronization paradigms, optimistic and conservative, combining the best properties of both into a single framework called Unified Virtual Time (UVT). In this part, we survey the synchronization effects that can be achieved by restricting to corner cases the relationships permitted among the control variables, GVT, CVT, TVT, and LVT, which were defined in Part 1. Here we also survey various throttling policies from the literature and describe how they can be implemented in UVT by controlling the value of TVT, including policies that can take advantage of rollback in addition to LP blocking. A significant result is a new category of efficient and higher precision throttling algorithms for optimistic execution that are based on optimistic lookahead, defined in a way that is symmetric to what we now call the conservative lookahead information that is traditionally used for conservative synchronization. Finally, we present a novel algorithm allowing the choice between lazy and aggressive cancellation to be made on a message-by-message basis using either external logic expressed in the model code, or policy code internal to the simulator, or a mixture of both.

throttling↗

LCA-PyTorch

LCA-PyTorch is a code repository which contains PyTorch implementations of the Locally Competitive Algorithm (LCA), which is a biologically-plausible sparse coding model. LCA-PyTorch allows for the training, testing, and analysis of single layer LCA networks, multi-layer LCA networks, and hybrid LCA-based deep neural network models on a wide variety of applications and data types. LCA-PyTorch was developed in Python, a high-level programming language that takes advantage of the Python ecosystem of high-quality open-source packages for machine learning. LCA-PyTorch interfaces heavily with the open-source PyTorch Python package.

Teti, Michael↗

torch-einshard v1.0

torch-einshard is a Python library for describing local and distributed PyTorch tensor computations with compact, einsum-like notation. Its expressions name logical axes, specify how they are sharded across a PyTorch DeviceMesh, and represent partial reductions. The library automatically performs contractions, permutations, reshaping, splitting, gathering, reduction, reduce-scatter, and repartitioning while preserving autograd. Additional features include sharding-aware FFTs, tensor rolls, halo exchange, sliding windows, 1D–3D convolutions, uneven-shard handling, parameter initialization and gradient management, and cost-based execution planning. It is designed for scientific machine learning and large-model workloads, including tensor-, sequence-, and spatial-parallel MLPs, attention, convolutions, and spectral operations. Compared with manually combining torch.einsum and distributed collectives, torch-einshard expresses both the mathematical operation and data placement in one readable formula. This reduces boilerplate and synchronization errors, keeps forward and backward communication consistent, and allows the library to select optimized collective strategies without changing model code.

Morozov, Dmitriy [Lawrence Berkeley National Labor↗

LeWRON: Learning ElectroWeak phase tRansitiON with agentic architecture

An agent to analyze electroweak phase transition. LeWRON turns a BSM model description or a reproduction target into a structured run: symbolic setup, effective-potential artifacts, finite-temperature machinery, generated model code, a scientific report, and an interactive exploration session. It keeps both machine-readable artifacts and human-readable notes, so a run can be resumed, audited, revised, and shared.

Wang, Isaac [Fermi National Accelerator Laboratory↗

Waveform Modeling and Simulation for Crustal Phases [Slides]

Goals for this project are to: numerically simulate wave propagation in layered crustal models with laterally-varying structure; Investigate seismic phases Pg and Pn; help understand the variability and complexity of these phases in recorded seismic data; and Use wavefield movies and "wavepaths" to suggest improvements for SALSA3D crustal tomography. In this presentation I will outline progress that has been made to date in an effort to modify a community research modeling code ("simulator")into a tool which can be used by GNDD researchers to study the effect of varying crustal velocity on wavefield propagation.

58 GEOSCIENCES↗

Substation Cable Layouts for EMP Coupling Analysis

Direct coupling of early-time high-altitude electromagnetic pulse (HEMP) to substation control cables is simulated for cable layouts based on surveys of seven electrical substations in the United States. An analytic transmission line modeling code is used to estimate worst-case coupled current at the terminations of cable segments in or near the control shack. Where applicable, an induced voltage due to cable shield grounding is also estimated. Various configurations are simulated, including cables with different elevations, lengths, radii, and terminations. Plots of the coupled HEMP effects are given, and general relationships between these effects and the substations geometric and material parameters are highlighted and discussed.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Incorporating new evaluation on angular distributions and energy spectra of neutron-induced charged particle reactions into the next ENDF library release (Technical Progress Report)

This project aims to provide the improved Evaluated Nuclear Data File (ENDF) using the newly measured data as well as the latest nuclear reaction model for calculating angular distributions and energy spectra on neutron-induced charged particle reactions through the collaboration of Korea Atomic Energy Research Institute (KAERI) and Los Alamos National Laboratory (LANL). The LANL group will provide the experimental data for angular distributions and spectra of (n,p) and (n,α) on several structural materials such as Fe, Ni and Zn isotopes using the Low Energy Neutron-induced Charged-particle (Z) Chamber (LENZ) instrument at Los Alamos Neutron Science Center (LANSCE). The KAERI group will provide the improved evaluated nuclear library which is based on the LANL experimental data, and further will predict angular distributions and spectra of (n,p) and (n,α) reactions on unmeasured nuclides, such as Cr, Mn, Co, Cu and so on. For the first year of this project, we planned to analyze (n,p) and (n,α) reactions for 54,56 Fe and perform new measurements on those reactions for 58,60 Ni isotopes with the LENZ instrument at LANSCE. For improving our evaluation quality, we have studied reaction models to reproduce LANL’s experimental angular distributions and energy spectra using the full Hauser-Feshbach model code, CoH3 with no approximations used. As the first year’s deliverables, we provided the experimental (n,p) and (n,α) reaction cross sections for 54,56 Fe and incorporate new evaluation on angular distributions and energy spectra of neutron-induced charged particle reactions into the current ENDF/B-VIII.0.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

A Multi-variable, Multi-value Hydrodynamic Modeling Approach to Support Marine Energy and Coastal Resilience Applications

Funded by the Marine Energy Seedling Laboratory Program, the study reported on here aimed to develop a multi-variable, multi-value hydrodynamic modeling approach based on the Finite-Volume Community Ocean Model (FVCOM) to support a wide range of marine renewable energy and coastal resilience applications. We migrated the marine hydrokinetic energy module to simulate tidal energy extraction by tidal turbines under wave-current interactions. We explored the particle tracking module in FVCOM and applied it to Sequim Bay, Washington, to illustrate the surface current field and mimic the pollutant transport near the surface. A tracer-water age module was added to FVCOM to examine water exchange through the entrance. Lastly, a user-specified vertical coordinate option was added to FVCOM to improve simulation of the effect of floating turbines on surface currents and scalar transport. The above-described model development has been tested using a simplified model domain and demonstrated in real-world coastal systems. The outcome of this project will provide a useful modeling code and approach for marine renewable energy and coastal resilience research and applications.

16 TIDAL AND WAVE POWER↗