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At least 343 records · Page 19

Understanding the I/O Performance Gap Between Cori KNL and Haswell

The Cori system at NERSC has two compute partitions with different CPU architectures: a 2,004 node Haswell partition and a 9,688 node KNL partition, which ranked as the 5th most powerful and fastest supercomputer on the November 2016 Top 500 list. The compute partitions share a common storage configuration, and understanding the IO performance gap between them is important, impacting not only to NERSC/LBNL users and other national labs, but also to the relevant hardware vendors and software developers. In this paper, we have analyzed performance of single core and single node IO comprehensively on the Haswell and KNL partitions, and have discovered the major bottlenecks, which include CPU frequencies and memory copy performance. We have also extended our performance tests to multi-node IO and revealed the IO cost difference caused by network latency, buffer size, and communication cost. Overall, we have developed a strong understanding of the IO gap between Haswell and KNL nodes and the lessons learned from this exploration will guide us in designing optimal IO solutions in many-core era.

97 MATHEMATICS AND COMPUTING↗

LMFR design and optimization methodology

This paper presents and applies a methodology for designing and optimizing Liquid Metal-cooled Fast Reactors (LMFRs). The methodology, called the Design and Optimization Methodology (DOM), achieves its goals by the effective exploration of a search space. The paper presents two case studies to demonstrate DOM. Both studies were based on the WEC long-life core LFR design. In the first study, DOM was used to explore the search space in the vicinity of the WEC (Westinghouse Electric Company LLC) long-life core LFR design trying to find a more optimized design. The objective of this optimization attempt was to reduce the fuel cycle cost. The WEC long-life core LFR design uses uranium mononitride (UN) fuel with natural nitrogen enrichment. In the second study, DOM was used to design a competitive UN fueled Lead-cooled Fast Reactor (LFR) which uses {sup 15}N enriched UN fuel. Based on the results from the second study, an estimation of the {sup 15}N enrichment cost required to obtain an economic core was performed. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Increased activity of core photorespiratory enzymes and CO 2 transfer conductances are associated with higher and more optimal photosynthetic rates under elevated temperatures in the extremophile Rhazya stricta

Increase photorespiration and optimising intrinsic water use efficiency are unique challenges to photosynthetic carbon fixation at elevated temperatures. To determine how plants can adapt to facilitate high rates of photorespiration at elevated temperatures while also maintaining water-use efficiency, we performed in-depth gas exchange and biochemical assays of the C 3 extremophile, Rhazya stricta. These results demonstrate that R. stricta supports higher rates of photorespiration under elevated temperatures and that these higher rates of photorespiration correlate with increased activity of key photorespiratory enzymes; phosphoglycolate phosphatase and catalase. The increased photorespiratory enzyme activities may increase the overall capacity of photorespiration by reducing enzymatic bottlenecks and allowing minimal inhibitor accumulation under high photorespiratory rates. Additionally, we found the CO 2 transfer conductances (stomatal and mesophyll) are re-allocated to increase the water-use efficiency in R. stricta but not necessarily the photosynthetic response to temperature. These results suggest important adaptive strategies in R. stricta that maintain photosynthetic rates under elevated temperatures with optimal water loss. The strategies found in R. stricta may inform breeding and engineering efforts in other C 3 species to improve photosynthetic efficiency at high temperatures.

59 BASIC BIOLOGICAL SCIENCES↗

Itinerant electrons, local moments, and magnetic correlations in the pnictide superconductors CeFeAsO₁₋ x F x and Sr(Fe₁₋ x Co x )₂As₂

A direct and element-specific measurement of the local Fe spin moment has been provided by analyzing the Fe 3s core level photoemission spectra in the parent and optimally doped CeFeAsO₁₋ x F x (x = 0, 0.11) and Sr(Fe₁₋ x Co x )2As2 (x = 0, 0.10) pnictides. The rapid time scales of the photoemission process allowed the detection of large local spin moments fluctuating on a 10⁻¹⁵ s time scale in the paramagnetic, antiferromagnetic, and superconducting phases, indicative of the occurrence of ubiquitous strong Hund's magnetic correlations. The magnitude of the spin moment is found to vary significantly among different families, 1.3μ B in CeFeAsO and 2.1μB in SrFe₂As₂. Surprisingly, the spin moment is found to decrease considerably in the optimally doped samples, 0.9μ B in CeFeAsO₀.₈₉F₀.₁₁ and 1.3μ B in Sr(Fe₀.₉Co₀.₁)₂As₂. The strong variation of the spin moment against doping and material type indicates that the spin moments and the motion of itinerant electrons are influenced reciprocally in a self-consistent fashion, reflecting the strong competition between the antiferromagnetic superexchange interaction among the spin moments and the kinetic energy gain of the itinerant electrons in the presence of a strong Hund's coupling. By describing the evolution of the magnetic correlations concomitant with the appearance of superconductivity, these results constitute a fundamental step toward attaining a correct description of the microscopic mechanisms shaping the electronic properties in the pnictides, including magnetism and high-temperature superconductivity.

Vilmercati, Paolo↗

Towards Scalable Optimal Sequence Homology Detection

Abstract—The field of bioinformatics and computational biol- ogy is experiencing a data revolution — experimental techniques to procure data have increased in throughput, improved in accuracy and reduced in costs. This has spurred an array of high profile sequencing and data generation projects. While the data repositories represent untapped reservoirs of rich information critical for scientific breakthroughs, the analytical software tools that are needed to analyze large volumes of such sequence data have significantly lagged behind in their capacity to scale. In this paper, we address homology detection, which is a funda- mental problem in large-scale sequence analysis with numerous applications. We present a scalable framework to conduct large- scale optimal homology detection on massively parallel super- computing platforms. Our approach employs distributed memory work stealing to effectively parallelize optimal pairwise alignment computation tasks. Results on 120,000 cores of the Hopper Cray XE6 supercomputer demonstrate strong scaling and up to 2.42 × 107 optimal pairwise sequence alignments computed per second (PSAPS), the highest reported in the literature.

Daily, Jeffrey A.↗

Recent developments in DYNSUB: New models, code optimization and parallelization

DYNSUB is a high-fidelity coupled code system consisting of the reactor simulator DYN3D and the sub-channel code SUBCHANFLOW. It describes nuclear reactor core behavior with pin-by-pin resolution for both steady-state and transient scenarios. In the course of the coupled code system's active development, super-homogenization (SPH) and generalized equivalence theory (GET) discontinuity factors may be computed with and employed in DYNSUB to compensate pin level homogenization errors. Because of the largely increased numerical problem size for pin-by-pin simulations, DYNSUB has bene fitted from HPC techniques to improve its numerical performance. DYNSUB's coupling scheme has been structurally revised. Computational bottlenecks have been identified and parallelized for shared memory systems using OpenMP. Comparing the elapsed time for simulating a PWR core with one-eighth symmetry under hot zero power conditions applying the original and the optimized DYNSUB using 8 cores, overall speed up factors greater than 10 have been observed. The corresponding reduction in execution time enables a routine application of DYNSUB to study pin level safety parameters for engineering sized cases in a scientific environment. (authors)

97 MATHEMATICS AND COMPUTING↗

NEAMS Milestone Report: M2MS–20OR030102 FW–CADIS PWR Ex-Core Analysis with Shift Through VERA

This report presents the work completed for the NEAMS milestone M2MS–20OR030102 titled "FW–CADIS PWR Ex-Core Analysis with Shift through VERA." The work completed for this milestone includes the implementation, integration, and optimization of memory and performance improvement methods in Shift for fully coupled ex-core calculations through Virtual Environment for Reactor Applications (VERA). Fully coupled in this context means the transfer of moderator boron concentration, pin-wise fission source, depleted compositions, temperatures, and moderator densities from MPACT (with COBRA-TF (CTF)) to Shift. The ability to run ex-core calculations with VERA has been enabled and used for several years by Consortium for Advanced Simulation of Light Water Reactors (CASL) partners. However, this implementation was limited and potentially computationally burdensome. This work has enabled the ability to run higher-fidelity ex-core calculations on moderate computing clusters by focusing on multithreading, domain decomposition, and Forward-Weighted CADIS (FW-CADIS) variance reduction. Tests performed on small cores, a small modular reactor (SMR), and CASL progression problems show very promising memory reduction and computational performance. Recommendations for settings when running fully coupled high-fidelity ex-core calculations with VERA are documented. Without these optimization methods, many processors on a compute node would be left unused for the entire ex-core calculation. Therefore, these methods enable the user to better use the resources available and reduce computation time.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Simultaneous ELM suppression and divertor detachment via synergistic boron powder and neon injection in EAST

A novel approach for simultaneous power exhaust and edge-localized mode (ELM) control is presented in the Experimental Advanced Superconducting Tokamak discharges, which utilize an ITER-like tungsten divertor. Real-time injection of boron (B) powder and neon (Ne) gas overcomes their limitations encountered when used separately. Pure Ne seeding leads to a narrow operational window constrained by core impurity accumulation and H-mode to L-mode back transitions, while pure solid B injection (SBI) is insufficient for effective divertor cooling. In comparison, their combined use achieves a stable, stationary, ELM-suppressed H-mode with adequate power exhaust. This synergistic scenario features partial energy detachment at the outer divertor while maintaining good plasma confinement (H 98 ∼ 1) with minimal degradation. Two key features of this scenario are: (1) the SBI triggers a persistent Edge Harmonic Mode (EHM), which provides a crucial continuous particle transport channel, preventing Ne and tungsten/molybdenum accumulation without flushing out by ELM, and (2) the B + Ne mixture allows for active optimization of the radiated power profile. Core radiation can be reduced by substituting a portion of the Ne with B, leveraging their complementary non-coronal equilibrium radiation efficiencies. This combined B + Ne injection scheme presents a promising pathway toward integrated core-edge scenarios, offering the potential to minimize total impurity throughput while leveraging an actuator (powder injection) already being considered for ITER.

Boron↗

Physics of Edge-Core Coupling by Inward Turbulence Propagation

The dynamics of edge-core coupling is critically important to the optimization of magnetically confined fusion plasmas. Since early proposals, there has been persistent speculation that inward propagation of turbulence from the boundary is a possible means to energize the edge-core coupling region. However, the detailed mechanism of this process has remained a mystery until recent experiments observed that regular, intense gradient relaxation events generated blob-void pairs very close to the last closed flux surface. Blobs ($\tilde{n}$ >0) propagate outward and detach from the bulk plasma, while voids ($\tilde{n}$ <0) propagate inward, and so stir the core plasma. Here, in this work, we demonstrate that this heretofore ignored process of void emission can drive a broad turbulent layer of width ∼100 𝜌 𝑠 , for typical parameters. The mechanism is the Cherenkov emission of drift waves from inward-propagating voids. The model shows promise to resolve several questions surrounding the shortfall problem and the strong turbulence in the edge-core coupling region.

drift waves↗

Validation of transport models using additive flux minimization technique

A new additive flux minimization technique is proposed for carrying out the verification and validation (V and V) of anomalous transport models. In this approach, the plasma profiles are computed in time dependent predictive simulations in which an additional effective diffusivity is varied. The goal is to obtain an optimal match between the computed and experimental profile. This new technique has several advantages over traditional V and V methods for transport models in tokamaks and takes advantage of uncertainty quantification methods developed by the applied math community. As a demonstration of its efficiency, the technique is applied to the hypothesis that the paleoclassical density transport dominates in the plasma edge region in DIII-D tokamak discharges. A simplified version of the paleoclassical model that utilizes the Spitzer resistivity for the parallel neoclassical resistivity and neglects the trapped particle effects is tested in this paper. It is shown that a contribution to density transport, in addition to the paleoclassical density transport, is needed in order to describe the experimental profiles. It is found that more additional diffusivity is needed at the top of the H-mode pedestal, and almost no additional diffusivity is needed at the pedestal bottom. The implementation of this V and V technique uses the FACETS::Core transport solver and the DAKOTA toolkit for design optimization and uncertainty quantification. The FACETS::Core solver is used for advancing the plasma density profiles. The DAKOTA toolkit is used for the optimization of plasma profiles and the computation of the additional diffusivity that is required for the predicted density profile to match the experimental profile.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

BEAM CORE: A Flexible Ecosystem for Freight, Demographics, and Vehicle Analysis

The Behavior, Energy, Autonomy, and Mobility Comprehensive Regional Evaluator (BEAM CORE) is an open-source, modular ecosystem of highly refined, agent-based modeling tools developed by Lawrence Berkeley National Laboratory and the National Laboratory of the Rockies. Organizations such as metropolitan planning organizations, agencies, and companies can use BEAM CORE to analyze freight movement and optimize logistics solutions, assess the impacts of emerging freight technologies or e-commerce trends, model dynamic population growth and evolution, and understand the drivers and impacts of electric vehicle adoption across households in a given region. Users can choose from a flexible suite of modeling modules according to their needs and priorities. The modules integrate with travel demand models to support enhanced analysis of diverse scenarios involving freight movement, vehicle technologies, and other key factors relevant to regional planning.

33 ADVANCED PROPULSION SYSTEMS↗

BEAM OPTIMIZATION STUDY FOR AN X-RAY FEL OSCILLATOR AT THE LCLS-II

The 4 GeV LCLS-II superconducting linac with high repetition beam rate enables the possibility to drive an X-Ray FEL oscillator at harmonic frequencies *. Compared to the regular LCLS-II machine setup, the oscillator mode requires a much longer bunch length with a relatively lower current. Also a flat longitudinal phase space distribution is critical to maintain the FEL gain since the X-ray cavity has extremely narrow bandwidth. In this paper, we study the longitudinal phase space optimization including shaping the initial beam from the injector and optimizing the bunch compressor and dechirper parameters. We obtain a bunch with a flat energy chirp over 400 fs in the core part with current above 100 A. The optimization was based on LiTrack and Elegant simulations using LCLS-II beam parameters.

Qin, Weilun↗

Application of Fully Ceramic Microencapsulated Fuel for Transuranic Waste Recycling in PWRs

Presented is an investigation of the utilization of Tristructural-Isotropic (TRISO) particle-based fuel designs for the recycling of transuranic (TRU) wastes in typical Westinghouse four-loop pressurized water reactors (PWRs). Though numerous studies have evaluated the recycling of TRU in light water reactors (LWRs), this work differentiates itself by employing TRU-loaded TRISO particles embedded within a SiC matrix and formed into pellets that can be loaded into standard 17 x 17 fuel element cladding. This approach provides the capability of TRU recycling and, by virtue of the TRISO particle design, will allow for greater burnup (i.e., removal of the need for UO2 mixing) and improved fuel reliability. In this study, a variety of assembly layouts and core loading patterns were analyzed to demonstrate the feasibility of TRU-loaded TRISO fuel. The assembly and core design herein reported are a work in progress, so they still require some fine-tuning to further flatten power peaks; however, the progress achieved thus far strongly supports the conclusion that with further rod/assembly/core loading and placement optimization, TRU-loaded TRISO fuel and core designs that are capable of balancing TRU production and destruction can be designed within the standard constraints for thermal and reactivity performance in PWRs.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Design study of Thorium-232 and Protactinium-231 based fuel for long life BWR

A preliminary design study for the utilization of thorium added with {sup 231}Pa based fuel on BWR type reactor has been performed. In the previous research utilization of fuel based Thorium-232 and Uranium-233 show 10 years operation time with maximum excess-reactivity about 4.075% dk/k. To increase reactor operation time and reduce excess-reactivity below 1% dk/k, Protactinium (Pa-231) is used as Burnable Poison. Protactinium-231 has very interesting neutronic properties, which enable the core to reduce initial excess-reactivity and simultaneously increase production of {sup 233}U to {sup 231}Pa in burn-up process. Optimizations of the content of {sup 231}Pa in the core enables the BWR core to sustain long period of operation time with reasonable burn-up reactivity swing. Based on the optimization of fuel element composition (Th and Pa) in various moderation ratio we can get reactor core with longer operation time, 20 {approx} 30 years operation without fuel shuffling or refuelling, with average power densities maximum of about 35 watt/cc, and maximum excess-reactivity 0.56% dk/k.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Planar Transformer With Asymmetric Integrated Leakage Inductance Using Horizontal Air Gap

This article presents a novel planar-based transformer winding and core structure with controllable leakage inductance generation for integrated magnetics applications. As a result of limitations in integrated magnetics from the literature, a new approach is proposed utilizing semi-interleaved windings and controllable leakage via a leakage flux core leg featuring a horizontal air gap. Here, the proposed transformer design is analyzed via detailed reluctance modeling to determine closed-form equations for the magnetizing and asymmetrically distributed leakage inductances. Next, a genetic-algorithm-based multiobjective design optimization problem is developed, seeking to minimize the core and winding losses of the proposed transformer subject to a set of parametric and geometric constraints in a dc-ac dual-active-bridge topology for microinverter applications. The optimization was extended to include other integrated magnetic structures from the literature, where it is determined that the proposed transformer is superior from the perspectives of efficiency, footprint area, and parasitic capacitance. Based on the results of the optimization analysis, two designs with theoretical transformer California Energy Commission (CEC) efficiency drops (i.e., CEC efficiency reduction specifically due to the transformer loss mechanisms) of 1.19% and 0.83% were fabricated and evaluated for electrical and thermal performance in the proposed 40 V, 400 W microinverter.

42 ENGINEERING↗

Neutronic design and fuel cycle analysis of a fluoride salt-cooled High Temperature Reactor (FHR)

The Fluoride salt-cooled High temperature Reactor (FHR) is a new Gen IV reactor concept that can operate under near atmospheric pressure circumstances and further enhance the inherent safety. In this study, an FHR core design with 165 megawatts of thermal output (MWth) is proposed. The reactor core employs tri-structural-isotropic (TRISO) particle fuel within prismatic graphite blocks as the basic fuel form, FLiBe (2 {sup 7}LiF-BeF{sub 2}) as the primary coolant, and a three-batch fuel cycle scheme. Sensitivity analyses on various parameters were performed to optimize the cycle length and neutronic parameters. The fuel cycle of this core design was evaluated in detail from 4 aspects: cycle length, power peaking factor (PPF), discharge burnup, and temperature coefficient. It was found that larger fuel channel pitch (FCP) would have a relatively harder neutron spectrum, and yield relatively longer cycle length, lower, better fuel temperature coefficient (FTC), and moderator temperature coefficient (MTC). In addition, burnable poison (BP), Er{sub 2}O{sub 3}, can effectively reduce PPF, hold down the multiplication factor, and more importantly it can improve the MTC. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Lattice cell and full core physics of internally cooled annular fuel in heavy water moderated reactors

A program is underway at Atomic Energy of Canada Limited (AECL) to develop a new fuel bundle concept to enable greater burnups for PT-HWR (pressure tube heavy water reactor) cores. One option that AECL is investigating is an internally cooled annular fuel (ICAF) element concept. ICAF contains annular cylindrical pellets with cladding on the inner and outer diameters. Coolant flows along the outside of the element and through the centre. With such a concept, the maximum fuel temperature as a function of linear element rating is significantly reduced compared to conventional, solid-rod type fuel. The preliminary ICAF bundle concept considered in this study contains 24 half-metre long internally cooled annular fuel elements and one non-fuelled centre pin. The introduction of the non-fuelled centre pin reduces the coolant void reactivity (CVR), which is the increase in reactivity that occurs on voiding the coolant in accident scenarios. Lattice cell and full core physics calculations of the preliminary ICAF fuel bundle concept have been performed for medium burnups of approximately 18 GWd/tU using WIMS-AECL and reactor fuel simulation program (RFSP). The results will be used to assist in concept configuration optimization. The effects of radial and axial core power distributions, linear element power ratings, refuelling rates and operational power ramps have been analyzed. The results suggest that burnups of greater than 18 GWd/tU can be achieved in current reactor designs. At approximately 18 GWd/tU, expected maximum linear element ratings in a PT-HWR with online-refuelling are approximately 90 kW/m. These conditions would be prohibitive for solid-rod fuel, but may be possible in ICAF fuel given the reduced maximum fuel temperature as a function of linear element rating. (authors)

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗