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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 343 records · Page 19
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Plumbene: a comprehensive review of theoretical and experimental advances

Plumbene, a two-dimensional (2D) material consisting of a single layer of lead (Pb) atoms in a honeycomb lattice, stands as a pioneering addition to the elemental 2D material family. Here, this comprehensive review encapsulates the theoretical predictions and experimental advancements that underscore its potential. With properties shaped by significant spin-orbit coupling and structural buckling, plumbene offers a playground for phenomena like the quantum spin Hall effect, superconductivity, and topological phase transitions. Despite promising theoretical insights, experimental realization has encountered challenges, primarily due to high reactivity of Pb and the need for precise fabrication conditions. This paper critically examines the electronic, thermal, mechanical, and topological attributes of plumbene, alongside synthesis methods, functionalization techniques, and substrate effects. It further proposes directions for addressing synthesis challenges and integrating plumbene into advanced technologies, particularly in electronic, spintronic, and quantum computing applications. This review aims to bridge the gap between theoretical potential and experimental progress, fostering a deeper understanding of this intriguing material.

2D materials↗
DOE OSTI2013

Comprehensive constraints on a spin-3/2 singlet particle as a dark matter candidate

We consider the proposal that dark matter (DM) is composed of a spin-3/2 Dirac-type particle that is a singlet of the standard model (SM). Its leading effective interactions with ordinary matter involve a pair of their fields and a pair of SM fermions, in the form of products of chiral currents. We make a comprehensive analysis on possible phenomenological effects of the interactions in various experiments and observations. These include collider searches for monojet plus missing transverse energy events, direct detections of DM scattering off nuclei, possible impacts on the gamma rays and antiproton-to-proton flux ratio in cosmic rays, and the observed relic density. The current data already set strong constraints on the effective interactions in a complementary manner. The constraint from collider searches is most effective at a relatively low mass of DM, and the antiproton-to-proton flux ratio offers the best bound for a heavy DM, while the spin-independent direct detection is the best in between. Putting all constraints together, a DM mass less than ∼ 1TeV has been excluded, leaving behind a small window for a heavy DM particle of spin-3/2.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

Comprehensive magnetohydrodynamic hybrid simulations of Alfvén eigenmode bursts and fast-ion losses in the Large Helical Device

Comprehensive magnetohydrodynamic (MHD) hybrid simulations with neutral beam injection and collisions were conducted to investigate the Alfvén eigenmode (AE) bursts and the fast-ion losses in the large helical device (LHD) for the realistic conditions close to the experiments. In this study, it is found in the simulation of the slowing-down time scale that the AE bursts take place repetitively accompanied by fast-ion redistribution and losses leading to lower saturation levels of stored fast-ion energy than those in a classical calculation where the MHD perturbations are neglected. The fast-ion loss rate caused by the AE burst has the quadratic dependence on AE amplitude, which was observed in the LHD experiment. The majority of the lost fast ions are counter-passing particles whose velocity and pitch-angle are close to those of the beam injection. The second component of the lost fast ions is transit particles whose velocity is close to thermal velocity. The loss of the counter-passing particles occurs mainly during the AE bursts, while the transit particles are lost both during the AE bursts and the quiescent periods with larger loss rate than that in the classical calculation. The initial location of the lost counter-injected particles spreads from the plasma edge to the plasma center, while only the particles initially located in the peripheral region are lost for the co-injected beam.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2011

NEST: a comprehensive model for scintillation yield in liquid xenon

Here, a comprehensive model for explaining scintillation yield in liquid xenon is introduced. We unify various definitions of work function which abound in the literature and incorporate all available data on electron recoil scintillation yield. This results in a better understanding of electron recoil, and facilitates an improved description of nuclear recoil. An incident gamma energy range of O(1 keV) to O(1 MeV) and electric fields between 0 and O(10 kV/cm) are incorporated into this heuristic model. We show results from a Geant4 implementation, but because the model has a few free parameters, implementation in any simulation package should be simple. We use a quasi-empirical approach, with an objective of improving detector calibrations and performance verification. The model will aid in the design and optimization of future detectors. This model is also easy to extend to other noble elements. In this paper we lay the foundation for an exhaustive simulation code which we call NEST (Noble Element Simulation Technique).

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2024

Plan evaluation for heat resilience: complementary methods to comprehensively assess heat planning in Tempe and Tucson, Arizona

Abstract Escalating impacts from climate change and urban heat are increasing the urgency for communities to equitably plan for heat resilience. Cities in the desert Southwest are among the hottest and fastest warming in the U.S., placing them on the front lines of heat planning. Urban heat resilience requires an integrated planning approach that coordinates strategies across the network of plans that shape the built environment and risk patterns. To date, few studies have assessed cities’ progress on heat planning. This research is the first to combine two emerging plan evaluation approaches to examine how networks of plans shape urban heat resilience through case studies of Tempe and Tucson, Arizona. The first methodology, Plan Quality Evaluation for Heat Resilience, adapts existing plan quality assessment approaches to heat. We assess whether plans meet 56 criteria across seven principles of high-quality planning and the types of heat strategies included in the plans. The second methodology, the Plan Integration for Resilience Scorecard™ (PIRS™) for Heat, focuses on plan policies that could influence urban heat hazards. We categorize policies by policy tool and heat mitigation strategy and score them based on their heat impact. Scored policies are then mapped to evaluate their spatial distribution and the net effect of the plan network. The resulting PIRS™ for Heat scorecard is compared with heat vulnerability indicators to assess policy alignment with risks. We find that both cities are proactively planning for heat resilience using similar plan and strategy types, however, there are clear and consistent opportunities for improvement. Combining these complementary plan evaluation methods provides a more comprehensive understanding of how plans address heat and a generalizable approach that communities everywhere could use to identify opportunities for improved heat resilience planning.

Environmental Sciences & Ecology↗
DOE OSTI2022

CAPG: comprehensive allopolyploid genotyper

Genotyping by sequencing is a powerful tool for investigating genetic variation in plants, but many economically important plants are allopolyploids, where homoeologous similarity obscures the subgenomic origin of reads and confounds allelic and homoeologous SNPs. Recent polyploid genotyping methods use allelic frequencies, rate of heterozygosity, parental cross or other information to resolve read assignment, but good subgenomic references offer the most direct information. The typical strategy aligns reads to the joint reference, performs diploid genotyping within each subgenome, and filters the results, but persistent read misassignment results in an excess of false heterozygous calls. We introduce the Comprehensive Allopolyploid Genotyper (CAPG), which formulates an explicit likelihood to weight read alignments against both subgenomic references and genotype individual allopolyploids from whole-genome resequencing data. We demonstrate CAPG in allotetraploids, where it performs better than Genome Analysis Toolkit’s HaplotypeCaller applied to reads aligned to the combined subgenomic references.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

An expectation–maximization framework for comprehensive prediction of isoform-specific functions

Advances in RNA sequencing technologies have achieved an unprecedented accuracy in the quantification of mRNA isoforms, but our knowledge of isoform-specific functions has lagged behind. There is a need to understand the functional consequences of differential splicing, which could be supported by the generation of accurate and comprehensive isoform-specific gene ontology annotations. We present isoform interpretation, a method that uses expectation–maximization to infer isoform-specific functions based on the relationship between sequence and functional isoform similarity. We predicted isoform-specific functional annotations for 85 617 isoforms of 17 900 protein-coding human genes spanning a range of 17 430 distinct gene ontology terms. Comparison with a gold-standard corpus of manually annotated human isoform functions showed that isoform interpretation significantly outperforms state-of-the-art competing methods. We provide experimental evidence that functionally related isoforms predicted by isoform interpretation show a higher degree of domain sharing and expression correlation than functionally related genes. We also show that isoform sequence similarity correlates better with inferred isoform function than with gene-level function.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

FatPlants: a comprehensive information system for lipid-related genes and metabolic pathways in plants

Abstract FatPlants, an open-access, web-based database, consolidates data, annotations, analysis results, and visualizations of lipid-related genes, proteins, and metabolic pathways in plants. Serving as a minable resource, FatPlants offers a user-friendly interface for facilitating studies into the regulation of plant lipid metabolism and supporting breeding efforts aimed at increasing crop oil content. This web resource, developed using data derived from our own research, curated from public resources, and gleaned from academic literature, comprises information on known fatty-acid-related proteins, genes, and pathways in multiple plants, with an emphasis on Glycine max, Arabidopsis thaliana, and Camelina sativa. Furthermore, the platform includes machine-learning based methods and navigation tools designed to aid in characterizing metabolic pathways and protein interactions. Comprehensive gene and protein information cards, a Basic Local Alignment Search Tool search function, similar structure search capacities from AphaFold, and ChatGPT-based query for protein information are additional features. Database URL: https://www.fatplants.net/

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Comprehensive earthquake catalogue update and spatiotemporal distribution analysis for Iraq and surrounding regions, northeastern Arabian Plate

The updated earthquake catalogue for Iraq covers the period from 1900 to the end of 2021 and includes over 37 000 recorded earthquakes. To create this comprehensive catalogue, five key steps were taken: compiling bulletins, calculating moment magnitudes, harmonizing magnitudes, establishing empirical conversion relations and evaluating the completeness of the catalogue. A notable enhancement in this update is the direct calculation of moment magnitudes for approximately 2800 earthquakes, achieved through the coda envelope technique and waveform data from the Mesopotamian Seismological Network (MPSN) in Iraq. This updated catalogue serves as a valuable resource for examining the spatiotemporal distribution of earthquakes, with respect to earthquake density, maximum moment magnitude and seismogenic depths. Additionally, the Gutenberg–Richter relationship was applied to calculate the a- and b-values specific to Iraq. The findings show that the Zagros Fold-Thrust Belt has a seismogenic layer (source) that ranges from 2 to 33 km deep and experiences high seismic activity. In contrast, the Mesopotamian Foredeep has a seismogenic layer ranging from 1 to 25 km deep and has lower seismic activity. The greatest seismic activity is concentrated around the Mandili-Badra-Teeb fault, which has experienced significant ruptures over time. The Outer Arabian Platform is identified as the main area of seismic activity, while additional activity occurs on the Inner Arabian Platform. Three major tectonic boundaries define the distribution of earthquakes in the northeastern Arabian Plate. These boundaries are defined by the Main Zagros Reverse Fault, the Zagros Foredeep Fault and the Anah Graben and Abu Jir-Euphrates Fault Zone. These boundaries highlight variations in seismicity levels and the spatial distribution of deformation in the region. The updated earthquake catalogue presented in this study is expected to play a vital role in regional seismicity assessments and seismic hazard analyses for Iraq and its surrounding areas.

58 GEOSCIENCES↗
DOE OSTI2019

Book Review: Monitoring compliance with the comprehensive Nuclear-Test-Ban Treaty (CTBT). Contributions by the German national data centre edited by Christoph Pilger, Lars Ceranna and Christian Bönnemann

For decades, the nuclear weapons capability of different countries was tracked in part via the interpretation of signals from more than 2000 nuclear test explosions that were conducted in programs of weapons development. The first such explosion took place in July 1945 (in New Mexico, USA, prior to the use of nuclear weapons in World War 2 against Japan). The last nuclear test, prior to the Comprehensive Nuclear-Test-Ban Treaty (CTBT) becoming open for signature in September 1996, was in July 1996 (in China). This treaty, which took nearly forty years to negotiate, has been signed by 184 states as of December 2018, but a few key additional signatures and ratifications are still needed before nuclear tests are banned under international law. The evidence that a nuclear test explosion has occurred can come from electromagnetic, seismic, hydroacoustic, and infrasonic waves; and from unusual radionuclides— which can be present in particulate matter and/or as noble gases. Of course there is a vast infrastructure associated with military programs of nuclear weapons development in a limited number of countries. Less well-known, is the existence of a large infrastructure involving national and international efforts to monitor for the possible occurrence of nuclear test explosions, and thus to support CTBT verification. This book does a very good job of explaining much of that work, as it is conducted in practice by a western nation with sophisticated facilities.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗
DOE OSTI2015

Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data

Background: Genetic interactions play a critical role in cancer development. Existing knowledge about cancer genetic interactions is incomplete, especially lacking evidences derived from large-scale cancer genomics data. The Cancer Genome Atlas (TCGA) produces multimodal measurements across genomics and features of thousands of tumors, which provide an unprecedented opportunity to investigate the interplays of genes in cancer. Methods: We introduce Zodiac, a computational tool and resource to integrate existing knowledge about cancer genetic interactions with new information contained in TCGA data. It is an evolution of existing knowledge by treating it as a prior graph, integrating it with a likelihood model derived by Bayesian graphical model based on TCGA data, and producing a posterior graph as updated and data-enhanced knowledge. In short, Zodiac realizes “Prior interaction map + TCGA data → Posterior interaction map.” Results: Zodiac provides molecular interactions for about 200 million pairs of genes. All the results are generated from a big-data analysis and organized into a comprehensive database allowing customized search. In addition, Zodiac provides data processing and analysis tools that allow users to customize the prior networks and update the genetic pathways of their interest. Zodiac is publicly available at www.compgenome.org/ZODIAC. Conclusions: Zodiac recapitulates and extends existing knowledge of molecular interactions in cancer. It can be used to explore novel gene-gene interactions, transcriptional regulation, and other types of molecular interplays in cancer.

Zhu, Yitan↗
DOE OSTI2011

A comprehensive overview of grain development in Brachypodium distachyon variety Bd21

A detailed and comprehensive understanding of seed reserve accumulation is of great importance for agriculture and crop improvement strategies. This work is part of a research programme aimed at using Brachypodium distachyon as a model plant for cereal grain development and filling. The focus was on the Bd21-3 accession, gathering morphological, cytological, and biochemical data, including protein, lipid, sugars, starch, and cell-wall analyses during grain development. This study highlighted the existence of three main developmental phases in Brachypodium caryopsis and provided an extensive description of Brachypodium grain development. In the first phase, namely morphogenesis, the embryo developed rapidly reaching its final morphology about 18 d after fertilization (DAF). Over the same period the endosperm enlarged, finally to occupy 80% of the grain volume. During the maturation phase, carbohydrates were continuously stored, mainly in the endosperm, switching from sucrose to starch accumulation. Large quantities of b-glucans accumulated in the endosperm with local variations in the deposition pattern. Interestingly, new b-glucans were found in Brachypodium compared with other cereals. Proteins (i.e. globulins and prolamins) were found in large quantities from 15 DAF onwards. These proteins were stored in two different sub-cellular structures which are also found in rice, but are unusual for the Pooideae. During the late stage of development, the grain desiccated while the dry matter remained fairly constant. Brachypodium exhibits some significant differences with domesticated cereals. Beta-glucan accumulates during grain development and this cell wall polysaccharide is the main storage carbohydrate at the expense of starch.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Impact of point spread function higher moments error on weak gravitational lensing – II. A comprehensive study

ABSTRACT Weak lensing is one of the most powerful probes for dark matter and dark energy science, although it faces increasing challenges in controlling systematic uncertainties as the statistical errors become smaller. The point spread function (PSF) needs to be precisely modeled to avoid systematic error on the weak lensing measurements. The weak lensing biases induced by errors in the PSF model second moments, i.e. its size and shape, are well-studied. However, Zhang et al. showed that errors in the higher moments of the PSF may also be a significant source of systematics for upcoming weak lensing surveys. Therefore, this work comprehensively investigate the modelling quality of PSF moments from the 3rd to 6th order, and propagate the PSFEx higher moments modelling error in the HSC survey data set to the weak lensing shear–shear correlation functions and their cosmological analyses. The overall multiplicative shear bias associated with errors in PSF higher moments can cause an ∼0.1σ shift on the cosmological parameters for LSST Y10, while the associated additive biases can induce 1σ uncertainties in cosmology parameter inference for LSST Y10, if not accounted. We compare the PSFEx model with PSF in Full FOV, and find similar performance in modelling the PSF higher moments. We conclude that PSF higher moment errors of the future PSF models should be reduced from those in current methods, otherwise needed to be explicitly modeled in the weak lensing analysis.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

A comprehensive examination of the optical morphologies of 719 isolated galaxies in the AMIGA sample

Abstract Using images from Sloan Digital Sky Survey Data Release 8, we have re-examined the morphology of 719 galaxies from the Analysis of the interstellar Medium in Isolated GAlaxies (AMIGA) project, a sample consisting of the most isolated galaxies that have yet been identified. The goal is to further improve the classifications of these galaxies by examining them in the context of the Comprehensive de Vaucouleurs revised Hubble-Sandage (CVRHS) system, which includes recognition of features that go beyond the original de Vaucouleurs point of view. Our results confirm previous findings that isolated galaxies are found across the complete revised Hubble sequence, with intermediate- to late-type (Sb-Sc) spirals being relatively more common. Elmegreen Arm Classifications are also presented, and show that more than 50 per cent of the 514 spirals in the sample for which an arm class (AC) could be judged are grand design (AC 8,9,12). The visual bar fraction for the sample is ≈50 per cent, but only 16 per cent are classified as strongly barred (SB). The dominant family classification is SA (non-barred), the dominant inner variety classification is (s) (pure spiral), and the dominant outer variety classification is no outer ring, pseudo-ring, or lens. The Kolmogorov–Smirnov test is used to check for potential biases in the morphological interpretations, and for any possible relation between rings, bars, and ACs with local environment and far-infrared excess. The connection between morphology and stellar mass is also examined for a subset of the sample.

Buta, Ronald J.↗
DOE OSTI2015

Comprehensive identification and analysis of human accelerated regulatory DNA

It has long been hypothesized that changes in gene regulation have played an important role in human evolution, but regulatory DNA has been much more difficult to study compared with protein-coding regions. Recent large-scale studies have created genome-scale catalogs of DNase I hypersensitive sites (DHSs), which demark potentially functional regulatory DNA. To better define regulatory DNA that has been subject to human-specific adaptive evolution, we performed comprehensive evolutionary and population genetics analyses on over 18 million DHSs discovered in 130 cell types. We identified 524 DHSs that are conserved in nonhuman primates but accelerated in the human lineage (haDHS), and estimate that 70% of substitutions in haDHSs are attributable to positive selection. Through extensive computational and experimental analyses, we demonstrate that haDHSs are often active in brain or neuronal cell types; play an important role in regulating the expression of developmentally important genes, including many transcription factors such as SOX6, POU3F2, and HOX genes; and identify striking examples of adaptive regulatory evolution that may have contributed to human-specific phenotypes. More generally, our results reveal new insights into conserved and adaptive regulatory DNA in humans and refine the set of genomic substrates that distinguish humans from their closest living primate relatives.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle

By uniformly analyzing 723 RNA-seq data from 91 tissues and cell types, we built a comprehensive gene atlas and studied tissue specificity of genes in cattle. We demonstrated that tissue-specific genes significantly reflected the tissue-relevant biology, showing distinct promoter methylation and evolution patterns (e.g., brain-specific genes evolve slowest, whereas testisspecific genes evolve fastest). Through integrative analyses of those tissue-specific genes with large-scale genome-wide association studies, we detected relevant tissues/cell types and candidate genes for 45 economically important traits in cattle, including blood/immune system (e.g., CCDC88C) for male fertility, brain (e.g., TRIM46 and RAB6A) for milk production, and multiple growth-related tissues (e.g., FGF6 and CCND2) for body conformation. We validated these findings by using epigenomic data across major somatic tissues and sperm. Collectively, our findings provided novel insights into the genetic and biological mechanisms underlying complex traits in cattle, and our transcriptome atlas can serve as a primary source for biological interpretation, functional validation, studies of adaptive evolution, and genomic improvement in livestock.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

Comprehensive analysis of the optical Kerr coefficient of graphene

We present a comprehensive analysis of the nonlinear optical Kerr effect in graphene. We directly solve the S-matrix element to calculate the absorption rate, utilizing the Volkov-Keldysh-type crystal wave functions. We then convert to the nonlinear refractive index coefficients through the Kramers-Kronig relation. In this formalism, the source of Kerr nonlinearity is the interplay of optical fields that cooperatively drive the transition from valence to conduction band. This formalism makes it possible to identify and compute the rates of distinct nonlinear processes that contribute to the Kerr nonlinear refractive index coefficient. The four identified mechanisms are two-photon absorption, Raman transition, self-coupling, and quadratic ac Stark effect. As a result, we present a comparison of our theory with recent experimental and theoretical results.

36 MATERIALS SCIENCE↗
DOE OSTI2022

Comprehensive demonstration of spin Hall Hanle effects in epitaxial Pt thin films

In this work, we demonstrate a nonlinear Hall effect due to the boundary spin accumulation in Pt films grown on Al 2 O 3 substrates. This Hall effect and the previously demonstrated Hanle magnetoresistance provide a complete picture of the spin-precession control of the spin and charge transport at the boundary of a spin-orbit coupled material, which we refer to as spin Hall Hanle effects (SHHE). We also show that the SHHE can be employed to measure the spin diffusion length, the spin Hall angle, and the spin relaxation time of heavy metal without the need of magnetic interface or the input from other measurements. The comprehensive demonstration of SHHE in such a simple system suggests they may be ubiquitous and needs to be considered for unraveling the spin and charge transport in more complex thin-film structures of spin-orbit coupled materials.

36 MATERIALS SCIENCE↗