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At least 343 records · Page 19

Fundamental studies of gas phase ionic reactions by ion mobility spectrometry

Ion mobility spectrometry (IMS) provides a promising approach to the study of gas phase ionic reactions in buffer gases at unusually high pressures. This point is illustrated here by studies of the Sn2 nucleophilic displacement reaction, Cl(-) + CH3Br yields Br + CH3Br, using IMS at atmospheric pressure. The equilibrium clustering reaction, Cl(-)(CHCI3)(n - 1) + CHCI3 yields Cl(-)(CHCI3)(n), where n = 1 and 2, and the effect of clustering on the Sn2 reaction with CH3Br have also been characterized by this IMS-based kinetic method. Present problems and anticipated improvements in the application of ion mobility spectrometry to studies of other gas phase ionic processes are discussed.

Giles, K.↗

Stellar density enhancements associated with IRAS sources in L1641

We obtained H and K' images of 59 Infrared Astronomical Satellite (IRAS) sources associated with dense molecular gas in L1641. Some of the sources were also imaged in narrow-band L and M. Using these near-IR images and photometry, we are able to identify the near-IR counterparts for most of the IRAS sources. The spectral energy distributions of the sources suggest that all of them are young stellar objects (class I and II sources). Most importantly, we find in this study that 14 IRAS sources are associated with small (but statistically significant) groupings of bright near-IR sources defined as stellar density enhancements (SDEs). The spatial distribution of young stars in the Orion A molecular cloud can be characterized by a range of stellar densities, from the Trapezium Cluster, to the SDEs, to individual stars. We conjecture that the SDEs are regions of continuous star formation within or around dense molecular cores and that they may represent an important mode of star formation in L1641. If true, adjustments to the standard star formation model may be required.

Chen, Hua↗

The Sound Parameter Effect in Metal-Rich Globular Clusters

Recent Hubble Space Telescope observations have found that the horizontal branches (HBs) in the metal-rich globular clusters NGC 6388 and NGC 6441 slope upward with decreasing B - V. Such a slope is not predicted by canonical HB models and cannot be produced by either a greater cluster age or enhanced mass loss along the red giant branch (RGB). The peculiar HB morphology in these clusters may provide an important clue for understanding the second-parameter effect. We have carried out extensive evolutionary calculations and numerical simulations in order to explore three noncanonical scenarios for explaining the sloped HBs in NGC 6388 and NGC 6441: (1) a high cluster helium abundance scenario, in which the HB evolution is characterized by long blue loops; (2) a rotation scenario, in which internal rotation during the RGB phase increases the HB core mass; and (3) a helium-mixing scenario, in which deep mixing on the RGB enhances the envelope helium abundance. All of these scenarios predict sloped HBs with anomalously bright RR Lyrae variables. We compare this prediction with the properties of the two known RR Lyrae variables in NGC 6388. Additional observational tests of these scenarios are suggested.

Hall, D. K↗

Interpreting the Operando XANES of Surface-Supported Subnanometer Clusters: When Fluxionality, Oxidation State, and Size Effect Fight.

X-ray absorption near edge structure (XANES) spectroscopy is widely used for operando catalyst characterization. We show that, for highly fluxional supported nanoclusters, the customary extraction of the oxidation state of the metal from the XANES data by fitting to the bulk standards is highly questionable. The XANES signatures as well as the apparent oxidation state for such clusters arise from a complex combination of many factors, and not only from the chemical composition in reaction conditions (e.g., oxygen content in oxidizing atmosphere). The thermally accessible isomerization and population of several structurally distinct cluster forms, cluster-support interaction, and intrinsic size effects all impact the metal oxidation state and XANES signal. We demonstrate this on copper oxide clusters with different compositions, Cu4Ox(x = 2-5) and Cu5Oy (y = 3, 5), deposited on amorphous alumina and ultrananocrystalline diamond, for which we computed the XANES spectra and compare the results to the experiment. We show in addition that fitting the experimental spectrum to calculated spectra of supported clusters can, in contrast, provide good agreement and insight into the spectrum-composition-structure relation. Experimental XANES interpreted using the proposed fitting scheme shows the partial reduction of Cu oxide clusters at rising temperatures, and pinpoints the specific stoichiometries that dominate in the ensemble of cluster states as the temperature changes.

Zandkarimi, Borna↗

Preliminary Analysis of Two Years of the Massive Collision Monitoring Activity

It is hypothesized that the interactions between many of the most massive derelicts in low Earth orbit are more frequent than modeled by the traditional combination of kinetic theory of gases and Poisson probability distribution function. This is suggested by the fact that there are clusters of derelicts where members' inclinations are nearly identical and their apogees/perigees overlap significantly resulting in periodic synchronization of the objects' orbits. In order to address this proposition, an experiment was designed and conducted over the last two years. Results from this monitoring and characterization experiment are presented with implications for proposed debris remediation strategies. Four separate clusters of massive derelicts were examined that are centered around 775km, 850km, 975km, and 1500km, respectively. In aggregate, the constituents of these clusters contain around 500 objects and about 800,000kg of mass; this equates to a third of all derelict mass in LEO. Preliminary analysis indicates that encounter rates over this time period for these objects are greater than is estimated by traditional techniques. Hypothesized dependencies between latitude of encounter, relative velocity, frequency of encounters, inclination, and differential semi-major axis were established and verified. This experiment also identified specific repeatable cluster dynamics that may reduce the cost/risk and enhance the effectiveness of debris remediation activities and also enable new operational debris remediation options.

McKnight, Darren↗

The Cocytos Stream: A Disrupted Globular Cluster from our Last Major Merger?

The census of stellar streams and dwarf galaxies in the Milky Way provides direct constraints on galaxy formation models and the nature of dark matter. The DESI Milky Way survey (with a footprint of 14,000$~deg{^2}$ and a depth of $r<19$ mag) delivers the largest sample of distant metal-poor stars compared to previous optical fiber-fed spectroscopic surveys. This makes DESI an ideal survey to search for previously undetected streams and dwarf galaxies. We present a detailed characterization of the Cocytos stream, which was re-discovered using a clustering analysis with a catalog of giants in the DESI year 3 data, supplemented with Magellan/MagE spectroscopy. Our analysis reveals a relatively metal-rich ([Fe/H]$=-1.3$) and thick stream (width$=1.5^\circ$) at a heliocentric distance of $\approx 25$ kpc, with an internal velocity dispersion of 6.5-9 km s$^{-1}$. The stream's metallicity, radial orbit, and proximity to the Virgo stellar overdensities suggest that it is most likely a disrupted globular cluster that came in with the Gaia-Enceladus merger. We also confirm its association with the Pyxis globular cluster. Our result showcases the ability of wide-field spectroscopic surveys to kinematically discover faint disrupted dwarfs and clusters, enabling constraints on the dark matter distribution in the Milky Way.

79 ASTRONOMY AND ASTROPHYSICS↗

Discovery of Activities via Statistical Clustering of Fixation Patterns

Human behavior often consists of a series of distinct activities, each characterized by a unique pattern of interaction with the visual environment. This is true even in a restricted domain, such as a piloting an aircraft, where activities with distinct visual signatures might be things like communicating, navigating, and monitoring. We propose a novel analysis method for gaze-tracking data, to perform blind discovery of these hypothetical activities. The method is in some respects similar to recurrence analysis, but here we compare not individual fixations, but groups of fixations aggregated over a fixed time interval. The duration of this interval is a parameter that we will refer to as delta. We assume that the environment has been divided into a set of N different areas-of-interest (AOIs). For a given interval of time of duration delta, we compute the proportion of time spent fixating each AOI, resulting in an N-dimensional vector. These proportions can be converted to integer counts by multiplying by delta divided by the average fixation duration (another parameter that we fix at 280 milliseconds). We compare different intervals by computing the chi-square statistic. The p-value associated with the statistic is the likelihood of observing the data under the hypothesis that the data in the two intervals were generated by a single process with a single set of probabilities governing the fixation of each AOI. The method has been applied to approximately 100 hours of eye movement data collected from pilots in a high-fidelity B747 flight simulator, and the results have been compared to synthetic data in which the each activity is represented as first-order Markov process with random probabilities assigned to the AOIs. Randomly-generated synthetic activities can require thousands of fixations to be discriminated with statistical significance, while the human data can be clustered using averaging windows of some 10's of seconds, suggesting that the actual activities are much more narrowly focused than random Markov models.

activity analysis↗

Nonprecious Single Atom Catalyst for Methane Pyrolysis

The development of a suitable catalytic system for methane pyrolysis reactions requires a detailed investigation of the activation energy of C-H bonds on catalysts, as well as their stability against sintering and coke formation. In this work, both single-metal Ni atoms and small clusters of Ni atoms deposited on titanium nitride (TiN) plasmonic nanoparticles were characterized for the C-H bond activation of a methane pyrolysis reaction using ab initio spin-polarized density functional theory (DFT) calculations. The present work shows the complete reaction pathway, including energy barriers for C-H bond activation and dehydrogenated fragments, during the methane pyrolysis reaction on catalytic systems. Interestingly, the C-H bond activation barriers were low for both Ni single-atom and Ni-clusters, showing the energy barriers of ~1.10 eV and ~0.88 eV, respectively. Additionally, single-atom Ni-TiN showed weaker binding to adsorbates, and a net endothermic reaction pathway indicated that the single-atom Ni-TiN was expected to resist coke formation on its surface. However, these Ni single-atom catalysts can sinter, aggregate into a small cluster, and form a coke layer from the highly exothermic reaction pathway that the cluster takes despite the facile reaction pathway.

08 HYDROGEN↗

Discovery of Activities via Statistical Clustering of Fixation Patterns

Human behavior often consists of a series of distinct activities, each characterized by a unique signature of visual behavior. This is true even in a restricted domain, such as piloting an aircraft, where patterns of visual signatures might represent activities like communicating, navigating, and monitoring. We propose a novel analysis method for gaze-tracking data, to perform blind discovery of these activities based on their behavioral signatures. The method is in some respects similar to recurrence analysis, but here we compare not individual fixations, but groups of fixations aggregated over a fixed time interval. The duration of this interval is a parameter that we will refer to as τ. We assume that the environment has been divided into a set of N different areas-of-interest (AOIs). For a given interval of time of duration τ, we compute the proportion of time spent fixating each AOI, resulting in an N-dimensional vector. These proportions can be converted to counts by multiplying by τ divided by the average fixation duration (another parameter that we fix at 280 milliseconds). We compare different intervals by computing the chi-square statistic. The p-value associated with the statistic is the likelihood of observing the data under the hypothesis that the data in the two intervals were generated by a single process with a single set of probabilities governing the fixation of each AOI. We have investigated the method using a set of 10 synthetic "activities," that sample 4 AOIs. Four of these activities visit 3 of the 4 AOIs, with equal probability; as there are four different ways to leave-one- out, there are four such activities. Similarly, there are six different activities that leave-two-out. Sequences of simulated behavior were generated by running each activity for 40 seconds, in sequence, for a total of 6.7 minutes. The figure to the right shows the matrix of chi-square statistics, using a value of 2.8 seconds for τ, corresponding to 10 fixations. Low values (dark) indicate poor evidence for activity differences, while high values (bright) indicate strong evidence. The dark squares along the main diagonal each correspond to the forty second intervals in which the activity was held constant; the 4x4 block at the lower left corresponds to the four leave-one-out activities, while the 6x6 block in the upper right corresponds to the leave-two-out activities. (The anti-diagonal pattern of white squares indicates those activity pairs that share no AOIs.) The chi-square values can be binarized by choosing a particular significance level; we are interested in grouping bins that represent the same activity, effectively accepting the null hypothesis. Therefore, we may adopt a relatively lax criterion; for example, choosing a p-value of 0.2 means that two behaviors that have only a 1-in-5 chance of being produced by a single activity might nevertheless be clustered together. We have explored several methods to perform clustering on the data and solving for the activity probabilities. Greedy methods begin by selecting the time bin that is similar to the most (or least) other bins, and then forming a cluster from it and all other non-discriminable bins. These methods show mediocre performance, as they do not take into account temporal contiguity. Preliminary results indicate that methods that "grow" clusters in time from seed points perform better.

activity analysis↗

Unexpected Formation of Metallofulleroids from Multicomponent Reactions, with Crystallographic and Computational Studies of the Cluster Motion

Abstract New multicomponent reactions involving an isocyanide, terminal or internal alkynes, and endohedral metallofullerene (EMF) Lu 3 N@C 80 yield metallofulleroids which are characterized by mass‐spectrometry, HPLC, and multiple 1D and 2D NMR techniques. Single crystal studies revealed one ketenimine metallofulleroid has ordered Lu 3 N cluster which is unusual for EMF monoadducts. Computational analysis, based on crystallographic data, confirm that the endohedral cluster motion is controlled by the position of the exohedral organic appendants. Our findings provide a new functionalization reaction for EMFs, and a potential facile approach to freeze the endohedral cluster motion at relatively high temperatures.

Li, Yanbang↗

Structural characterization of an intrinsically disordered protein complex using integrated small-angle neutron scattering and computing

Characterizing structural ensembles of intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) of proteins is essential for studying structure–function relationships. Due to the different neutron scattering lengths of hydrogen and deuterium, selective labeling and contrast matching in small-angle neutron scattering (SANS) becomes an effective tool to study dynamic structures of disordered systems. However, experimental timescales typically capture measurements averaged over multiple conformations, leaving complex SANS data for disentanglement. We hereby demonstrate an integrated method to elucidate the structural ensemble of a complex formed by two IDRs. We use data from both full contrast and contrast matching with residue-specific deuterium labeling SANS experiments, microsecond all-atom molecular dynamics (MD) simulations with four molecular mechanics force fields, and an autoencoder-based deep learning (DL) algorithm. From our combined approach, we show that selective deuteration provides additional information that helps characterize structural ensembles. We find that among the four force fields, a99SB-disp and CHARMM36m show the strongest agreement with SANS and NMR experiments. In addition, our DL algorithm not only complements conventional structural analysis methods but also successfully differentiates NMR and MD structures which are indistinguishable on the free energy surface. Finally, we present an ensemble that describes experimental SANS and NMR data better than MD ensembles generated by one single force field and reveal three clusters of distinct conformations. Our results demonstrate a new integrated approach for characterizing structural ensembles of IDPs.

59 BASIC BIOLOGICAL SCIENCES↗

The Einstein soft X-ray survey of the Pleiades

The results of a 0.1-4.5-keV X-ray survey of a 2 x 2-deg area centered on the Pleiades open cluster, performed using the imaging proportional counter and high-resolution imager of the Einstein Observatory on four days in 1980-1981, are presented in extensive tables, graphs, maps, histograms, and finding charts and characterized. A total of 61 sources are detected, and 44 of these are identified with cluster members of spectral types B-M. Findings discussed include Lx/Lbol of 10 the -7th for early-type stars; F-star mean Lx like that of F stars in the Hyades and in the field (denying time evolution of Lx); mean G-star Lx = 3.7 x 10 to the 29th erg/sec; G-star activity decay more gradual than 1/sq rt t, with sharp fall for t greater than 1 Gyr; and no evidence for X-ray-emissivity/rotational-velocity correlation in a homogeneous sample of K dwarfs or a sample of K and M stars with established V sin i data.

Caillault, J.-P.↗

The reliability of X-ray constraints of intrinsic cluster shapes

Using the simulation of Katz & White (1993) we have tested the viability of X-ray analysis for constraining the intrinsic shapes of clusters of galaxies considering the effects of both substructure and steep temperature gradients. We restrict our analysis to the aggregate shapes of clusters on scales of r approximately 1-2 Mpc in order to reduce our sensitivity to subclustering in the core. For low redshifts (z less than or approximately = 0.25) the X-ray method accurately measures the true ellipticity of the three-dimensional cluster dark matter provided the inclination of the cluster is known to within approximately 30 deg; assuming the gas is isothermal adds only small errors to the derived shapes. At higher redshifts the X-ray method yields unreliable results since the gas does not trace the cluster gravitational potential. We proffer some necessary conditions for the reliability of X-ray methods characterized by both the amount of substructure in the X-ray surface brightness images and the shapes of the isophotes. We conclude that measurements of the aggregate shapes of clusters on scales r approximately 1-2 Mpc are insensitive to core substructure representing scales of a few hundred kpc. Therefore our results suggest that the X-ray measurements of aggregate cluster shapes by Fabricant, Rybicki, & Gorenstein (1984) and Buote & Canizares (1992) are valid provided that they do not suffer from serious projection effects. A substantial number of Abell clusters observed with the ROSAT PSPC will be amenable to X-ray shape analysis.

Buote, David A.↗

Expression, purification, and characterization of diacylated Lipo-YcjN from Escherichia coli

YcjN is a putative substrate binding protein expressed from a cluster of genes involved in carbohydrate import and metabolism in Escherichia coli. Here, we determine the crystal structure of YcjN to a resolution of 1.95 Å, revealing that its three-dimensional structure is similar to substrate binding proteins in subcluster D-I, which includes the well-characterized maltose binding protein. Furthermore, we found that recombinant overexpression of YcjN results in the formation of a lipidated form of YcjN that is posttranslationally diacylated at cysteine 21. Comparisons of size-exclusion chromatography profiles and dynamic light scattering measurements of lipidated and nonlipidated YcjN proteins suggest that lipidated YcjN aggregates in solution via its lipid moiety. Additionally, bioinformatic analysis indicates that YcjN-like proteins may exist in both Bacteria and Archaea, potentially in both lipidated and nonlipidated forms. Together, our results provide a better understanding of the aggregation properties of recombinantly expressed bacterial lipoproteins in solution and establish a foundation for future studies that aim to elucidate the role of these proteins in bacterial physiology.

Escherichia coli↗

An archaeal genomic signature

Comparisons of complete genome sequences allow the most objective and comprehensive descriptions possible of a lineage's evolution. This communication uses the completed genomes from four major euryarchaeal taxa to define a genomic signature for the Euryarchaeota and, by extension, the Archaea as a whole. The signature is defined in terms of the set of protein-encoding genes found in at least two diverse members of the euryarchaeal taxa that function uniquely within the Archaea; most signature proteins have no recognizable bacterial or eukaryal homologs. By this definition, 351 clusters of signature proteins have been identified. Functions of most proteins in this signature set are currently unknown. At least 70% of the clusters that contain proteins from all the euryarchaeal genomes also have crenarchaeal homologs. This conservative set, which appears refractory to horizontal gene transfer to the Bacteria or the Eukarya, would seem to reflect the significant innovations that were unique and fundamental to the archaeal "design fabric." Genomic protein signature analysis methods may be extended to characterize the evolution of any phylogenetically defined lineage. The complete set of protein clusters for the archaeal genomic signature is presented as supplementary material (see the PNAS web site, www.pnas.org).

Non-NASA Center↗

The structure of giant elliptical galaxies in poor clusters of galaxies

Detailed photographic surface photometry is presented of the nine first brightest galaxies in poor clusters suspected of being cD galaxies. The surface photometry is put on an absolute scale, using multiaperture photoelectric photometry. Oemler (1976) and de Vaucouleurs (1948) laws are fitted to the profiles to derive structural parameters, and the structural properties of the galaxies are compared with those of the cD galaxies in rich clusters studied by Oemler (1976) and those of normal ellipticals studied by Kormendy (1977). It is found that (1) the profiles of first brightest galaxies are well fitted by an r to the 1/4 power law over a range of more than nine magnitudes and down to the faintest light levels observed and (2) structural parameters characterizing only the central part of first brightest galaxies in poor and rich clusters, and excluding the envelope component in the case of rich clusters, smoothly extend properties exhibited by normal ellipticals. These observations are consistent with the idea that the central part of first brightest galaxies in both poor and rich clusters is made up by the mergers of smaller galaxies.

Thuan, T. X.↗

Characterizing the intracluster light over the redshift range 0.2 < z < 0.8 in the DES-ACT overlap

ABSTRACT We characterize the properties and evolution of bright central galaxies (BCGs) and the surrounding intracluster light (ICL) in galaxy clusters identified in the Dark Energy Survey and Atacama Cosmology Telescope Survey (DES-ACT) overlapping regions, covering the redshift range 0.20 < z < 0.80. Over this redshift range, we measure no change in the ICL’s stellar content (between 50 and 300 kpc) in clusters with log10(M200m,SZ/M⊙) >14.4. We also measure the stellar mass–halo mass (SMHM) relation for the BCG+ICL system and find that the slope, β, which characterizes the dependence of M200m,SZ on the BCG+ICL stellar mass, increases with radius. The outskirts are more strongly correlated with the halo than the core, which supports that the BCG+ICL system follows a two-phase growth, where recent growth (z < 2) occurs beyond the BCG’s core. Additionally, we compare our observed SMHM relation results to the IllustrisTNG300-1 cosmological hydrodynamic simulations and find moderate qualitative agreement in the amount of diffuse light. However, the SMHM relation’s slope is steeper in TNG300-1 and the intrinsic scatter is lower, likely from the absence of projection effects in TNG300-1. Additionally, we find that the ICL exhibits a colour gradient such that the outskirts are bluer than the core. Moreover, for the lower halo mass clusters (log10(M200m,SZ/M⊙) < 14.59), we detect a modest change in the colour gradient’s slope with lookback time, which combined with the absence of stellar mass growth may suggest that lower mass clusters have been involved in growth via tidal stripping more recently than their higher mass counterparts.

79 ASTRONOMY AND ASTROPHYSICS↗