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At least 343 records · Page 19
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Lower functional redundancy in “narrow” than “broad” functions in global soil metagenomics

Understanding the relationship between soil microbial taxonomic compositions and functional profiles is essential for predicting ecosystem functions under various environmental disturbances. However, even though microbial communities are sensitive to disturbance, ecosystem functions remain relatively stable, as soil microbes are likely to be functionally redundant. Microbial functional redundancy may be more associated with “broad” functions carried out by a wide range of microbes than with “narrow” functions in which specific microorganisms specialize. Thus, a comprehensive study to evaluate how microbial taxonomic compositions correlate with broad and narrow functional profiles is necessary. Here, we evaluated soil metagenomes worldwide to assess whether functional and taxonomic diversities differ significantly between the five broad and the five narrow functions that we chose. Our results revealed that, compared with the five broad functions, soil microbes capable of performing the five narrow functions were more taxonomically diverse, and thus their functional diversity was more dependent on taxonomic diversity, implying lower levels of functional redundancy in narrow functions. Co-occurrence networks indicated that microorganisms conducting broad functions were positively related, but microbes specializing in narrow functions were interacting mostly negatively. Our study provides strong evidence to support our hypothesis that functional redundancy is significantly different between broad and narrow functions in soil microbes, as the association of functional diversity with taxonomy was greater in the five narrow than in the five broad functions.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Phylogenomics and diversification of Sordariomycetes

The Sordariomycetes is a specious, morphologically diverse, and widely distributed class of the phylum Ascomycota that forms a well-supported clade diverged from Leotiomycetes. Aside from their ecological significance as plant and human pathogens, saprobes, endophytes, and fungicolous taxa, species of Sordariomycetes produces a wide range of chemically novel and diverse metabolites used in important fields. Recent phylogenetic analyses derived from a small number of genes have considerably increased our understanding of the family, order, and subclass relationships within Sordariomycetes, but several important groups have not been resolved well. In addition, there are various paraphyletic or polyphyletic groups. Moreover, the criteria used to establish higher ranks remain highly variable across different studies. Therefore, the taxonomy of Sordariomycetes is in constant flux, remains poorly understood, and is subject to much controversy. Here, for the first time, we have assembled a phylogenetic dataset containing 638 genomes representing the 156 genera, 50 families, and 17 orders and 5 subclasses of Sordariomycetes. This data set is based on 1124 genes and results in a well-resolved phylogenomic tree. We further constructed an evolutionary timeline of Sordariomycetes diversification based on the genomic data sets. Our divergence time estimate results are inconsistent with previous studies, suggesting estimates of node ages are less precise and varied. Based on these results, we discuss the higher ranks of Sordariomycetes and empirically propose an unprecedented taxonomic framework for the class.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites

“Higher” termites have been able to colonize all tropical and subtropical regions because of their ability to digest lignocellulose with the aid of their prokaryotic gut microbiota. Over the last decade, numerous studies based on 16S rRNA gene amplicon libraries have largely described both the taxonomy and structure of the prokaryotic communities associated with termite guts. Host diet and microenvironmental conditions have emerged as the main factors structuring the microbial assemblages in the different gut compartments. Additionally, these molecular inventories have revealed the existence of termite-specific clusters that indicate coevolutionary processes in numerous prokaryotic lineages. However, for lack of representative isolates, the functional role of most lineages remains unclear. We reconstructed 589 metagenome-assembled genomes (MAGs) from the different gut compartments of eight higher termite species that encompass 17 prokaryotic phyla. By iteratively building genome trees for each clade, we significantly improved the initial automated assignment, frequently up to the genus level. We recovered MAGs from most of the termite-specific clusters in the radiation of, for example, Planctomycetes, Fibrobacteres, Bacteroidetes, Euryarchaeota, Bathyarchaeota, Spirochaetes, Saccharibacteria, and Firmicutes, which to date contained only few or no representative genomes. Moreover, the MAGs included abundant members of the termite gut microbiota. This dataset represents the largest genomic resource for arthropod-associated microorganisms available to date and contributes substantially to populating the tree of life. More importantly, it provides a backbone for studying the metabolic potential of the termite gut microbiota, including the key members involved in carbon and nitrogen biogeochemical cycles, and important clues that may help cultivating representatives of these understudied clades.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Functional and genomic diversity of the sorghum phyllosphere microbiome

A collection of 47 bacteria isolated from the mucilage of aerial roots of energy sorghum is available at the Great Lakes Bioenergy Research Center, Michigan State University, Michigan, USA. We enriched bacteria with putative plant-beneficial phenotypes and included information on phenotypic diversity, taxonomy, and whole genome sequences.

agroecosystems↗
NASA NTRS1971

The analysis of incomplete data.

In this paper, we attempt to provide a simple taxonomy for incomplete-data problems and at the same time develop unified methods of analysis. The emphasis is on techniques which are natural extensions of the complete-data analysis and which will handle rather general classes of incomplete-data problems as opposed to custom-made techniques for special problems. The principle of estimation is either maximum likelihood or is at least based on maximum likelihood.

Hartley, H. O.↗
NASA NTRS1973

The role of man in flight experiment payload missions. Volume 1: Results

It is pointed out that a controversy exists concerning the required role of man, and his attendant skills and levels of skills, for Sortie Lab operations. As a result, a study was conducted to generate a taxonomy of candidate crew roles which would: (1) be applicable across all experiments, and (2) be usable for Sortie scientists and engineers in determination of level of skill as well as type of skill. Nine basic roles were identified in the study, and the tasks associated with each were developed from a functional description of a generalized in-flight experiment. The functional analysis comprised the baseline for establishment of crew roles, with roles being defined as combinations of tasks, associated skills, and knowledges. A role classification scheme was developed in which the functions and tasks identified were allocated to each of the nine role types. This classification scheme is presented together with the significant results of the study.

Malone, T. B.↗
NASA NTRS1973

Development of flight experiment work performance and workstation interface requirements. Part 2: Appendix H

A skill requirement definition method was applied to the problem of determining, at an early stage in system/mission definition, the skills required of on-orbit crew personnel whose activities will be related to the conduct or support of earth-orbital research. The experiment data base was selected from proposed experiments in NASA's Earth Orbital Research and Application Investigation program as related to space shuttle missions, specifically those being considered for sortie lab. Activities during the study, include identification of basic functions dealing with man's research and/or servicing activities on orbit. A crew function taxonomy was prepared relative to these activities. Likely candidate experiments for shuttle sortie missions were selected through extensive review of experiment and mission descriptions. Crew functions and tasks were initially identified for more than fifty representative earth orbital experiments, and a comprehensive task analysis was conducted on these tasks for selected payloads.

Hatterick, R. G.↗
NASA NTRS1974

Craters on Earth, Moon, and Mars - Multivariate classification and mode of origin

Testing extraterrestrial craters and candidate terrestrial analogs for morphologic similitude is treated as a problem in numerical taxonomy. According to a principal-components solution and a cluster analysis, 402 representative craters on the Earth, the Moon, and Mars divide into two major classes of contrasting shapes and modes of origin. Craters of net accumulation of material (cratered lunar domes, Martian calderas, and all terrestrial volcanoes except maars and tuff rings) group apart from craters of excavation (terrestrial meteorite impact and experimental explosion craters, typical Martian craters, and all other lunar craters). Maars and tuff rings belong to neither group but are transitional. The classification criteria are four independent attributes of topographic geometry derived from seven descriptive variables by the principal-components transformation. Morphometric differences between crater bowl and raised rim constitute the strongest of the four components.

Pike, R. J.↗
NASA NTRS1977

Automatic multiple applicator electrophoresis

Easy-to-use, economical device permits electrophoresis on all known supporting media. System includes automatic multiple-sample applicator, sample holder, and electrophoresis apparatus. System has potential applicability to fields of taxonomy, immunology, and genetics. Apparatus is also used for electrofocusing.

Grunbaum, B. W.↗
NASA NTRS1977

The squirrel monkey as a candidate for space flight

Because of its size and other unique diurnal-primate characteristics, the squirrel monkey is used in: (1) actual bioflight missions, (2) in laboratory tests designed to clarify the risks to man during launch and recovery as well as in hazardous spaceflight environments; and (3) in the acquisition of data on unknown risks encountered in long duration space exploration. Pertinent data concerning samiri sciureus as described in published and unpublished reports are summarized. Topics include: taxonomy, ethology, life history, sensory-learning-motor capabilities in primate perspective, anatomy and physiology (including homeostatic adaptation to stress), susceptibility to environmental hazards, reproduction, care and clinical management, and previous use in aerospace biomedical research.

Brizzee, K. R.↗
NASA NTRS1979

Atlas of soil reflectance properties

A compendium of soil spectral reflectance curves together with soil test results and site information is presented in an abbreviated manner listing those soil properties most important in influencing soil reflectance. Results are presented for 251 soils from 39 states and Brazil. A narrative key describes relationships between soil parameters and reflectance curves. All soils are classified according to the U.S. soil taxonomy and soil series name for ease of identification.

Stoner, E. R.↗
NASA NTRS1980

Problem solving and decisionmaking: An integration

An attempt was made to redress a critical fault of decisionmaking and problem solving research-a lack of a standard method to classify problem or decision states or conditions. A basic model was identified and expanded to indicate a possible taxonomy of conditions which may be used in reviewing previous research or for systematically pursuing new research designs. A generalization of the basic conditions was then made to indicate that the conditions are essentially the same for both concepts, problem solving and decisionmaking.

Dieterly, D. L.↗
NASA NTRS1983

The NASA computer science research program plan

A taxonomy of computer science is included, one state of the art of each of the major computer science categories is summarized. A functional breakdown of NASA programs under Aeronautics R and D, space R and T, and institutional support is also included. These areas were assessed against the computer science categories. Concurrent processing, highly reliable computing, and information management are identified.

Source record↗
NASA NTRS1981

Morphometric consistency with the Hausdorff-Besicovich dimension

Studies using different measurement resolutions on a single morphologic feature may yield vastly different measured values for the perimeter. Apparent internal inconsistencies such as these have greatly impeded the numerical taxonomy, description, and modeling of landforms. Fortunately, the underlying internal consistency of measurements can often be reestablished by introducing the Hausdorff-Besicovich dimension into the analysis. This is demonstrated here by the example of perimeter-area ratio measurements made on some of the complicated ejecta deposits that surround many Martian meteorite-impact craters.

Woronow, A.↗