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In Vitro Selections with RNAs of Variable Length Converge on a Robust Catalytic Core

In vitro selection is a powerful tool that can be used to understand basic principles of molecular evolution. We used in vitro selection to understand how changes in length and the accumulation of point mutations enable the evolution of functional RNAs. Using RNA populations of various lengths, we performed a series of in vitro experiments to select for ribozymes with RNA ligase activity. We identified a core ribozyme structure that was robust to changes in RNA length, high levels of mutagenesis, and increased selection pressure. Elaboration on this core structure resulted in improved activity which we show is consistent with a larger trend among functional RNAs in which increasing motif size can lead to an exponential improvement in fitness. We conclude that elaboration on conserved core structures is a preferred mechanism in RNA evolution. This conclusion, drawn from selections of RNAs from random sequences, is consistent with proposed evolutionary histories of specific biological RNAs. More generally, our results indicate that modern RNA structures can be used to infer ancestral structures. Our observations also suggest a mechanism by which structural outcomes of early RNA evolution would be largely reproducible even though RNA fitness landscapes consist of disconnected clusters of functional sequences.

In vitro evolution↗

NASA NTRS2012

Keck/NIRC2 Imaging of the Warped, Asymmetric Debris Disk Around HD 32297

We present Keck/NIRC2 K(sub s) band high-contrast coronagraphic imaging of the luminous debris disk around the nearby, young A star HD 32297 resolved at a projected separation of r = 0.3 - 2.5" (approx equals 35 - 280 AU). The disk is highly warped to the north and exhibits a complex, "wavy" surface brightness profile interior to r approx equals 110 AU, where the peaks/plateaus in the profiles are shifted between the NE and SW disk lobes. The SW side of the disk is 50 - 100% brighter at r = 35 - 80 AU, and the location of its peak brightness roughly coincides with the disk's mm emission peak. Spectral energy distribution modeling suggests that HD 32297 has at least two dust populations that may originate from two separate belts likely at different locations, possibly at distances coinciding with the surface brightness peaks. A disk model fur a single dust belt including a phase function with two components and a 5 - 10 AU pericenter offset explains the disk's warped structure and reproduces some of the surface brightness profile's shape (e.g. the overall "wavy" profile, the SB peak/plateau shifts) but more poorly reproduces the disk's brightness asymmetry and the profile at wider separations (r > 110 AU). Although there may be a1ternate explanations, agreement between the SW disk brightness peak and disk's peak rom emission is consistent with an overdensity of very small, sub-blowout-sized dust and large, 0.1 - 1 mm-sized grains at approx equal 45 AU tracing the same parent population of planetesimals. New near-IR and submm observations may be able to clarify whether even more complex grain scattering properties or dynamical sculpting by an unseen planet are required to explain HD 32297's disk structure.

Currie, Thayne↗

NASA NTRS1993

Particle injection and the structure of energetic-particle-modified shocks

A macroscopic 'self-consistent' nonlinear two-fluid model is developed for energetic-particle-modeled shocks. The model incorporates particle exchange between a thermal gas and an energetic population via a 'thermal leakage' mechanism. In the model, injection is regarded as a process whereby particles in the cooler thermal core of a total particle distribution are energized sufficiently to cross a 'momentum boundary' into the wings of the distribution. Particles in the wings are identified as 'energetic particles' or 'cosmic rays' and are assumed to propagate according to the diffusive transport equation of cosmic ray theory. Thermal particles are energized either as a result of adiabatic compression in a decelerating flow or directly via anomalous heating within a subshock. It is shown that the nature and model of particle injection directly affects the nature and dynamics of the shock, and hence the efficiency of particle acceleration, and that the shock itself regulates particle injection dynamically.

Zank, G. P.↗

NASA NTRS1981

Emissivities of strong ultraviolet lines

Using atomic data published during the last few years for Li to Mg sequence ions, we have carried out multilevel calculations over a range of electron pressures to obtain absolute intensities for spectral lines in the UV and EUV regions of the electromagnetic spectrum. Both the pressure dependence of the ionization balance and the dependence of line emissivities on the populations of metastable levels are taken into account. These line emissivities may be used to obtain plane-parallel model atmospheres for different solar transition region structures, and in general for other late-type stars which have observable lines over a wide range of excitation potentials.

Raymond, J. C.↗

NASA NTRS2014

Preparation of Metal Nanowire Decorated Carbon Allotropes

In the method of embodiments of the invention, the metal seeded carbon allotropes are reacted in solution forming zero valent metallic nanowires at the seeded sites. A polymeric passivating reagent, which selects for anisotropic growth is also used in the reaction to facilitate nanowire formation. The resulting structure resembles a porcupine, where carbon allotropes have metallic wires of nanometer dimensions that emanate from the seed sites on the carbon allotrope. These sites are populated by nanowires having approximately the same diameter as the starting nanoparticle diameter.

Southward, Robin E.↗

NASA NTRS2016

Preparation of Metal Nanowire Decorated Carbon Allotropes

Southward, Robin E.↗

NASA NTRS2016

Relativistic Electrons Produced by Foreshock Disturbances Observed Upstream of Earth's Bow Shock

Charged particles can be reflected and accelerated by strong (i.e., high Mach number) astrophysical collisionless shock waves, streaming away to form a foreshock region in communication with the shock. Foreshocks are primarily populated by suprathermal ions that can generate foreshock disturbances-largescale (i.e., tens to thousands of thermal ion Larmor radii), transient (approximately 5-10 per day) structures. They have recently been found to accelerate ions to energies of several keV. Although electrons in Saturn's high Mach number (M > 40) bow shock can be accelerated to relativistic energies (nearly 1000 keV), it has hitherto been thought impossible to accelerate electrons beyond a few tens of keV at Earth's low Mach number (1 ≤M <20) bow shock. Here we report observations of electrons energized by foreshock disturbances to energies up to at least approximately 300 keV. Although such energetic electrons have been previously observed, their presence has been attributed to escaping magnetospheric particles or solar events. These relativistic electrons are not associated with any solar or magnetospheric activity. Further, due to their relatively small Larmor radii (compared to magnetic gradient scale lengths) and large thermal speeds (compared to shock speeds), no known shock acceleration mechanism can energize thermal electrons up to relativistic energies. The discovery of relativistic electrons associated with foreshock structures commonly generated in astrophysical shocks could provide a new paradigm for electron injections and acceleration in collisionless plasmas.

SLAMS↗

NASA NTRS2017

Multi-Wavelength Laser Transmitter for the Two-Step Laser Time-of-Flight Mass Spectrometer

Missions to diverse Outer Solar System bodies will require investigations that can detect a wide range of organics in complex mixtures, determine the structure of selected molecules, and provide powerful insights into their origin and evolution. Previous studies from remote spectroscopy of the Outer Solar System showed a diverse population of macromolecular species that are likely to include aromatic and conjugated hydrocarbons with varying degrees of methylation and nitrile incorporation. In situ exploration of Titan's upper atmosphere via mass and plasma spectrometry has revealed a complex mixture of organics. Similar material is expected on the Ice Giants, their moons, and other Outer Solar System bodies, where it may subsequently be deposited onto surface ices. It is evident that the detection of organics on other planetary surfaces provides insight into the chemical and geological evolution of a Solar System body of interest and can inform our understanding of its potential habitability. We have developed a prototype two-step laser desorption/ionization time-of-flight mass spectrometer (L2MS) instrument by exploiting the resonance-enhanced desorption of analyte. We have successfully demonstrated the ability of the L2MS to detect hydrocarbons in organically-doped analog minerals, including cryogenic Ocean World-relevant ices and mixtures. The L2MS instrument operates by generating a neutral plume of desorbed analyte with an IR desorption laser pulse, followed at a delay by a ultraviolet (UV) laser pulse, ionizing the plume. Desorption of the analyte, including trace organic species, may be enhanced by selecting the wavelength of the IR desorption laser to coincide with IR absorption features associated with vibration transitions of minerals or organic functional groups. In this effort, a preliminary laser developed for the instrument uses a breadboard mid-infrared (MIR) desorption laser operating at a discrete 3.475 μm wavelength, and a breadboard UV ionization laser operating at a wavelength of 266 nm. The MIR wavelength was selected to overlap the C-H stretch vibrational transition of certain aromatic hydrocarbons, and the UV wavelength provides additional selectivity to aromatic species via UV resonance-enhanced multiphoton ionization effects. The use of distinct laser wavelengths allows efficient coupling to the vibrational and electronic spectra of the analyte in independent desorption and ionization steps, mitigating excess energy that can lead to fragmentation during the ionization process and leading to selectivity that can aid in data interpretation.

Yu, Anthony W.↗

NASA NTRS2020

Bubble Mapping with the Square Kilometre Array - I. Detecting Galaxies with Euclid, JWST, WFIRST, and ELT within Ionized Bubbles in the Intergalactic medium at z > 6

The Square Kilometre Array (SKA) is expected to provide the first tomographic observations of the neutral intergalactic medium at redshifts z > 6 and pinpoint the locations of individual ionized bubbles during early stages of cosmic reionization. In scenarios where star-forming galaxies provide most of the ionizing photons required for cosmic reionization, one expects the first ionized bubbles to be centred on overdensities of such galaxies. Here, we model the properties of galaxy populations within isolated, ionized bubbles that SKA-1 should be able to resolve at z ≈ 7–10, and explore the prospects for galaxy counts within such structures with various upcoming near-infrared telescopes. We find that, for the bubbles that are within reach of SKA-1 tomography, the bubble volume is closely tied to the number of ionizing photons that have escaped from the galaxies within. In the case of galaxy-dominated reionization, galaxies are expected to turn up above the spectroscopic detection threshold of JWST and ELT in even the smallest resolvable bubbles at z ≤ 10. The prospects of detecting galaxies within these structures in purely photometric surveys with Euclid, WFIRST, JWST, or ELT are also discussed. While spectroscopy is preferable towards the end of reionization to provide a robust sample of bubble members, multiband imaging may be a competitive option for bubbles at z ≈ 10, due to the very small number of line-of-sight interlopers expected at these redshifts.

Erik Zackrisson↗

NASA NTRS1981

Toward a theory of distributed word expert natural language parsing

An approach to natural language meaning-based parsing in which the unit of linguistic knowledge is the word rather than the rewrite rule is described. In the word expert parser, knowledge about language is distributed across a population of procedural experts, each representing a word of the language, and each an expert at diagnosing that word's intended usage in context. The parser is structured around a coroutine control environment in which the generator-like word experts ask questions and exchange information in coming to collective agreement on sentence meaning. The word expert theory is advanced as a better cognitive model of human language expertise than the traditional rule-based approach. The technical discussion is organized around examples taken from the prototype LISP system which implements parts of the theory.

Rieger, C.↗

NASA NTRS1985

Skylab observations of the solar O I resonance triplet

Profile variations from center to limb, as well as at different heights above the quiet solar limb, are illustrated by profile observations of the solar O I resonant triplet at 1302, 1304, and 1306 A that were obtained with the Skylab S082-B spectrograph. Since these lines share a common upper energy level, source function equality should exist for them when the lower states are populated according to their statistical weights. Profile congruency and profile inversion calculations comparisons show, however, that this is not the case, suggesting either errors in the fine structure collision rates, or the H I Ly-beta flux preferentially depopulating the 1302 A lower level, or two-dimensional transfer effects.

Roussel-Dupre, D.↗

NASA NTRS1986

Characteristics of the tail of Comet Giacobini-Zinner

The physical structure and characteristics of the Comet Giacobini-Zinner tail are described. Variations in the vector B-field configuration, the electron distribution function, the energetic ion population, and the electromagnetic and electrostatic plasma wave spectra are analyzed. The ICE detected a two-lobe magnetic field configuration and a narrow central plasma sheet. Additional analyses proposed for the Giacobini-Zinner tail data are discussed.

Scarf, F. L.↗

NASA NTRS2011

Quantification of Posterior Globe Flattening: Methodology Development and Validationc

Microgravity exposure affects visual acuity in a subset of astronauts, and mechanisms may include structural changes in the posterior globe and orbit. Particularly, posterior globe flattening has been implicated in several astronauts. This phenomenon is known to affect some terrestrial patient populations, and has been shown to be associated with intracranial hypertension. It is commonly assessed by magnetic resonance imaging (MRI), computed tomography (CT), or B-mode ultrasound (US), without consistent objective criteria. NASA uses a semi-quantitative scale of 0-3 as part of eye/orbit MRI and US analysis for occupational monitoring purposes. The goal of this study was to initiate development of an objective quantification methodology for posterior globe flattening.

Lumpkins, S. B.↗

NASA NTRS1992

Evaluation of human response to structural vibrations induced by sonic booms

The topic is addressed of building vibration response to sonic boom and the evaluation of the associated human response to this vibration. An attempt is made to reexamine some of the issues addressed previously and to offer fresh insight that may assist in reassessing the potential impact of sonic boom over populated areas. Human response to vibration is reviewed first and a new human vibration response criterion curve is developed as a function of frequency. The difference between response to steady state versus impulsive vibration is addressed and a 'vibration exposure' or 'vibration energy' descriptor is suggested as one possible way to evaluate duration effects on response to transient vibration from sonic booms. New data on the acoustic signature of rattling objects are presented along with a review of existing data on the occurrence of rattle. Structural response to sonic boom is reviewed and a new descriptor, 'Acceleration Exposure Level' is suggested which can be easily determined from the Fourier Spectrum of a sonic boom. A preliminary assessment of potential impact from sonic booms is provided in terms of human response to vibration and detection of rattle based on a synthesis of the preceding material.

Sutherland, Louis C.↗

NASA NTRS2008

Adaptation of the Skeletal System during Long-duration Spaceflight

This review will highlight evidence from crew members flown on space missions greater than 90 days to suggest that the adaptations of the skeletal system to mechanical unloading may predispose crew members to an accelerated onset of osteoporosis after return to Earth. By definition, osteoporosis is a skeletal disorder - characterized by low bone mineral density and structural deterioration - that reduces the ability of bones to resist fracture under the loading of normal daily activities. Involutional or agerelated osteoporosis is readily recognized as a syndrome afflicting the elderly population because of the insipid and asymptomatic nature of bone loss that does not typically manifest as fractures until after age approximately 60. It is not the thesis of this review to suggest that spaceflight-induced bone loss is similar to bone loss induced by metabolic bone disease; rather this review draws parallels between the rapid and earlier loss in females that occurs with menopause and the rapid bone loss in middle-aged crew members that occurs with spaceflight unloading and how the cumulative effects of spaceflight and ageing could be detrimental, particularly if skeletal effects are totally or partially irreversible. In brief, this report will provide detailed evidence that long-duration crew members, exposed to the weightlessness of space for the typical long-duration (4-6 months) mission on Mir or the International Space Station -- 1. Display bone resorption that is aggressive, that targets normally weight-bearing skeletal sites, that is uncoupled to bone formation and that results in areal BMD deficits that can range between 6-20% of preflight BMD; 2. Display compartment-specific declines in volumetric BMD in the proximal femur (a skeletal site of clinical interest) that significantly reduces its compressive and bending strength and which may account for the loss in hip bone strength (i.e., force to failure); 3. Recover BMD over a post-flight time period that exceeds spaceflight exposure but for which the restoration of whole bone strength remains an open issue and may involve structural alteration; and 4. Display risk factors for bone loss -- such as the negative calcium balance and down-regulated calcium-regulating hormones in response to bone atrophy -- that can be compounded by the constraints of conducting mission operations (inability to provide essential nutrients and vitamins). The full characterization of the skeletal response to mechanical unloading in space is not complete. In particular, countermeasures used to date have been inadequate and it is not yet known whether more appropriate countermeasures can prevent the changes in bone that have been found in previous flights, knowledge gaps related to the effects of prolonged (greater than or equal to 6 months) space exposure and to partial gravity environments are substantial, and longitudinal measurements on crew members after spaceflight are required to assess the full impact on skeletal recovery.

Sibonga, Jean D.↗

NASA NTRS2003

Small-Scale Interstellar Structure Toward the Open Cluster CHI Persei-Fuse II

The purpose of this study was to measure the physical conditions of gas along sight lines toward 6 stars in the core Chi Persei open cluster. These sight lines traverse gas in both the Orion and Perseus spiral arms of the Galaxy, at distances of 500 and 2000 pc, respectively. The stars have angular separations ranging from 45 to 280 arcsec; 60 arcsec corresponds to linear distances of 0.15 and 0.6 pc in the two arms. Thus, abundance variations in these observations would constitute evidence for small-scale variations in the properties of the interstellar medium. Ground-based Na I observations at high resolution (approx. 15 km/sec) toward 172 stars (including the 6 in this study) in the double open cluster h and Chi Persei have revealed complex spatial variation. These variations are especially evident in the gas at velocities of -40 and -55 km/sec, corresponding to the Perseus spiral arm. 21 cm observations of HI emission using the Low Resolution DRAO Survey, with a 12-arcmin beam, also show variations. Averaging the Na I apparent optical depth profiles of neighboring sight lines in order to mimic such a beam size reduces the variation, as compared to the individual Na I measurements, but still show variations larger than seen in the 21 cm profiles. Na I is not the dominant ionization state of Na in the interstellar medium. Thus, it is possible that the variations seen really trace physical structures in the interstellar medium, or they may simply result from variations in the radiation field seen by the gas, or be due to some other environmental circumstance. To distinguish among these possibilities in the present study we obtained FUSE spectra toward the 6 targets in order to measure the molecular hydrogen absorption profiles along these sight lines. The higher J states of H2 are populated by the ambient W radiation field, and thus can provide insight into the environment affecting the gas. If both the high and low J states reveal absorption line profiles with variations similar to that observed in Na I, this would indicate that the variations are due to real structures in the interstellar medium. On the other hand, if the only the high J profiles mimicked the Na I profiles, then the variations may be attributable to environmental effects. We found that the H2 profiles showed considerable variation over the 6 sight lines, and that the profiles, despite having somewhat lower velocity resolution, resemble the Na I profiles. Thus, it appears that the gas really does exhibit variations in physical structures along these sight lines. Useful follow-up work would be to obtain higher signal-to-noise FUSE observations of H2, since the present data are of only moderate quality, and to obtain data on additional targets in this double cluster, in order to map out in more detail the extent and magnitude of the small-scale variations.

Sonneborn, George↗

NASA NTRS1995

Remotely sensed indicators of habitat heterogeneity and biological diversity: A preliminary report

The relationship between habitat area, spatial dynamics of the landscape, and species diversity is an important theme in population and conservation biology. Of particular interest is how populations of various species are affected by increasing habitat edges due to fragmentation. Over the last decade, assumptions regarding the effects of habitat edges on biodiversity have fluctuated wildly, from the belief that they have a positive effect to the belief that they have a clearly negative effect. This change in viewpoint has been brought about by an increasing recognition of the importance of geographic scale and a reinterpretation of natural history observations. In this preliminary report from an ongoing project, we explore the use of remote sensing technology and geographic information systems to further our understanding of how species diversity and population density are affected by habitat heterogeneity and landscape composition. A primary feature of this study is the investigation of SAR for making more rigorous investigations of habitat structure by exploiting the interaction between radar backscatter and vegetation structure and biomass. A major emphasis will be on the use of SAR data to define relative structural types based on measures of structural consolidation using the vegetation surface area to volume ratio (SA/V). Past research has shown that SAR may be sensitive to this form of structural expression which may affect biodiversity.

Imhoff, Marc↗

NASA NTRS1995

Mixed Carrier Conduction in Modulation-doped Field Effect Transistors

The contribution of more than one carrier to the conductivity in modulation-doped field effect transistors (MODFET) affects the resultant mobility and complicates the characterization of these devices. Mixed conduction arises from the population of several subbands in the two-dimensional electron gas (2DEG), as well as the presence of a parallel path outside the 2DEG. We characterized GaAs/AlGaAs MODFET structures with both delta and continuous doping in the barrier. Based on simultaneous Hall and conductivity analysis we conclude that the parallel conduction is taking place in the AlGaAs barrier, as indicated by the carrier freezeout and activation energy. Thus, simple Hall analysis of these structures may lead to erroneous conclusions, particularly for real-life device structures. The distribution of the 2D electrons between the various confined subbands depends on the doping profile. While for a continuously doped barrier the Shubnikov-de Haas analysis shows superposition of two frequencies for concentrations below 10(exp 12) cm(exp -2), for a delta doped structure the superposition is absent even at 50% larger concentrations. This result is confirmed by self-consistent analysis, which indicates that the concentration of the second subband hardly increases.

Schacham, S. E.↗