Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Plant Health”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 343 records · Page 19
All sourcesNASA NTRSDOE OSTI
NASA NTRS2020

Plankton, Aerosol, Cloud, Ocean Ecosystem (PACE) Mission Integration and Testing

This paper describes the plans, flows, key facilities, components and equipment necessary to fully integrate, functionally test and qualify the Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) Observatory. PACE is currently in the design phase of mission implementation. It is scheduled to launch in 2022, extending and improving NASA's twenty-year record of satellite observations of global ocean biology, aerosols and clouds. PACE will advance the assessment of ocean health by measuring the distribution of phytoplankton, which are small plants and algae that sustain the marine food web. It will also continue systematic records of key atmospheric variables associated with air quality and the Earth's climate. The PACE observatory is comprised of the spacecraft and three instruments, an Ocean Color Instrument (OCI) and two polarimeters, the Hyper-Angular Rainbow Polarimeter 2 (HARP2) and the Spectro-Polarimeter for Exploration (SPEXone). The spacecraft and the OCI, which is the primary instrument, are developed and integrated at the NASA Goddard Space Flight Center (GSFC). The OCI is a hyper-spectral scanning (HSS) radiometer designed to measure spectral radiances from the ultraviolet to shortwave infrared (SWIR) to enable advanced ocean color and heritage cloud and aerosol particle science. The HARP2 and SPEXone are secondary instruments on the PACE observatory, acquired outside of GSFC. The Hyper-Angular Rainbow Polarimeter instrument (HARP2) is a wide swath imaging polarimeter that is capable of characterizing atmospheric aerosols for purposes of sensor atmospheric correction as well as atmospheric science. The SPEXone provides atmospheric aerosol and cloud data at high temporal and spatial resolution. This paper will focus on the Integration and Test (I&T) activities for the PACE mission at NASA GSFC. This I&T phase consists of mechanical, electrical and thermal integration and test of all the spacecraft subsystems and the integration of the instruments with the spacecraft. The PACE observatory environmental tests include electromagnetic interference (EMI)/electromagnetic compatibility (EMC), vibration, acoustics, shock, thermal balance, thermal vacuum, mass properties and center of gravity. This paper will also discuss the observatory shipment to the launch site as well as the launch site processing.

Petro, Susanna↗
DOE OSTI2021

Treatment of uncertainties for security-related design aspects of advanced reactors when using a risk-informed licensing approach

Sabotage of nuclear plants and theft of special nuclear material are different from many other issues potentially affecting public health and safety, and some of those differences drive the content of the present report. A high-level indication of these differences is provided in the US Nuclear Regulatory Commission’s Safety Goal Policy. Promulgated in the mid-1980’s, when it had become reasonably clear that risk analysis had improved to the point where it was possible to understand the risks associated with plant operation, the Safety Goal Policy articulates qualitative safety goals and quantitative health objectives that are meant to guide regulatory and risk management activities, with the following key exceptions noted in the original policy statement: The possible effects of sabotage or diversion of nuclear material are also not presently included in the safety goals. At present there is no basis on which to provide a measure of risk on these matters. It is the Commission’s intention that everything that is needed will be done to keep these types of risks at their present very low level; and it is the Commission’s expectation that efforts on this point will continue to be successful. With these exceptions, it is the Commission’s intent that the risks from all the various initiating mechanisms be considered to the best of the capability of current evaluation techniques. The present report discusses extensions of classical risk management to address some of the special issues that arise in the context of security. Although the present emphasis is on physical security, some attention will be paid to cyber security. A particular focus of the report is on quantitative framework to manage and address uncertainties. This framework is demonstrated via a couple of hypothetical examples.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗
NASA NTRSDate not supplied

Coronado Ecological Conservation: Assessing Vegetation Change Due to Border Wall Construction and Shifting Social Trails

Species monitoring is essential in mitigating the impacts of plant invasion, such as radical changes in an area’s ecosystem, degraded soil health, increased wildfire severity, landslides, and increased flooding. NASA DEVELOP partnered with the National Park Service (NPS) to investigate invasive species in disturbed lands: specifically, areas affected by off-trail walking and US-Mexico border construction activities. The team assessed how construction has impacted the distribution of Lehmann’s lovegrass and Russian thistle invasives throughout Coronado National Memorial, AZ from 1986 to 2022. Using data from Landsat 5 and 8, Sentinel-2, the National Agriculture Imagery Program, and PlanetScope, the team computed vegetation indices including the Normalized Difference Vegetation Index, Normalized Difference Moisture Index, Modified Soil Adjusted Vegetation Index 2, Enhanced Vegetation Index, and Tasseled Cap Wetness, Brightness, and Greenness transformations as vegetation health indicators to input into various machine learning algorithms. To minimize noise, the team conducted Principal Component Analysis on the vegetation indices and spectral bands before running k-means++ clustering and random forest classification algorithms. Between all datasets, we found the median area fully overtaken by invasive plants was 5.37% of the park’s total area in 2022. The NPS will use the end products to help increase restoration efforts in disturbed areas with high concentrations of invasive plants. The NPS’s collection of ground data for 2022–2023, in conjunction with future data collection, will notably improve the accuracy of classification models, leading to more precise monitoring of invasive spread over time.

Carson Schuetze↗
NASA NTRS2023

Coronado Ecological Conservation: Assessing Vegetation Change Due to Border Wall Construction and Shifting Social Trails

Species monitoring is essential for mitigating the impacts of plant invasion, such as radical changes in an area’s ecosystem, degraded soil health, increased wildfire severity, landslides, and increased flooding. For this project, NASA DEVELOP partnered with the National Park Service (NPS) to investigate invasive species in disturbed lands: specifically, areas affected by off-trail travel and U.S.-Mexico border construction activities. The team assessed how construction has impacted the distribution of Lehmann’s lovegrass and Russian thistle invasives throughout Coronado National Memorial, AZ from 1986-2022. Using data from Landsat 5 and 8, Sentinel-2, NAIP, and PlanetScope, the team computed NDVI, NDMI, MSAVI2, EVI, and Tasseled Cap Wetness, Brightness, and Greenness transformations as vegetation health indicators to input into various machine learning algorithms. To minimize noise, the team conducted Principal Component Analysis on vegetation indices and spectral bands before running k-means clustering and random forest classification algorithms. Between all datasets, the team found that the median area fully overtaken by invasive plants was 5.37% of the park’s total area in 2022. The NPS will use end products to help increase restoration efforts in disturbed areas with high concentrations of invasive plants, and this project can serve as a jumping off point for future invasive species monitoring. The NPS’s collection of ground data for 2022-2023, in conjunction with future data collection, will notably improve the accuracy of classification models, leading to more precise monitoring of invasive species spread over time.

Coronado National Memorial↗
DOE OSTI2023

Soil management legacy interacts with wheat genotype to determine access to organic N in a dryland system

Organic nutrient management through the application of compost and/or cover crops provides mineralizable sources of nutrients for plants while often building soil organic matter (SOM) and various aspects of soil health. Variability in nutrient acquisition strategies between crop genotypes may confer advantages under different soil health contexts and could be important for crop selection and breeding, but crop response under field conditions remains unexplored. We investigated the ability of different genotypes of winter wheat (Triticum aestivum L.) to access nitrogen (N) from newly added cover crop residues in two soils with contrasting levels of SOM and biological activity. We planted three previously characterized wheat genotypes in a long-term dryland compost amendment field trial: 1) Byrd (modern, deep roots, low exudation), 2) Cheyenne (historic, drought susceptible, intermediate exudation), and 3) Snowmass (modern, drought-susceptible, high exudation). 15 N-labelled cover crop residue was added to each plot and traced into wheat tissue. In the low SOM soil, the high exudate genotype Snowmass and historic genotype Cheyenne took up the most residue-derived N (6.4–8.1 kg N ha −1 ) compared to the low-exudate genotype Byrd (4.4 kg N ha −1 ), suggesting a strong exudate effect in the more carbon-limited soil. However, in the high SOM soil, the low-exudate, deep rooted genotype, Byrd, took up the most residue N (4.6 kg N ha −1 vs. 2.8 and 3.3 hg N ha −1 for Cheyenne and Snowmass, respectively), which indicated higher native N cycling activities and greater importance of drought resistance. Enzyme activity, inorganic N, and microbial communities were not influenced by genotype, though did show strong effects of compost application legacy. Furthermore, our results show that belowground allocation strategies that favor microbial stimulation may be less successful under water limitation, especially when high native SOM and biological activity can support mineralization of residue N without added investment in root inputs. Increased soil health through SOM-building management likely enhances nutrient cycling, and may better support root strategies that invest less in microbial stimulation in favor of other limiting resources.

Compost↗
DOE OSTI2023

Survey of Aging and Monitoring Concerns for Cables and Splices Due to Cable Repair and Replacement

The purpose of this report is to survey aging and monitoring concerns for electrical cable splices in nuclear power plants (NPPs) in long term operation. As portions of existing electrical cable runs in nuclear are replaced over time due to localized events, the total number of splices in NPPs is expected to increase. Relative to cables, the body of knowledge regarding aging of splices and splices in combination with aging cables in nuclear service environments in long-term operations is low. A few reports have considered the aging of cable system components other than cables (Jacobus 1990; Nelson 1998; Villaran and Lofaro 2002), but the nuclear industry has two decades of operating experience since these were published to further enlighten this issue. Herein we discuss electrical cables and splices commonly found in U.S. nuclear power plants, their qualification in safety-related application, and methods for monitoring their health condition. Common environmental stresses that can give rise to cable and splice failure are discussed. The Nuclear Regulatory Commission (NRC) Licensee Event Reports (LER) database was used to identify documented issues of cable and splice failure. The trend in the resultant data over time is considered to see if failures are increasing as plants age. Observations and conclusions of this work include: 1. Cables and splices are highly reliable components. Occurrence rates for events of interest were low and nearly constant over the last 20 years. 2. Common-cause failure for evaluated cable events of interest was observed to primarily be associated with loose connections, which may manifest associated with workmanship issues, thermal cycling, and/or vibration. 3. Replacement of cables is more common than repair, leading to an increase in proportion of new generation cables in the plant over time. 4. Splices on degraded cables have been observed to be problematic. Due to aging NPP infrastructure, including electrical cables, it is expected that such issues will continue to increase. 5. Condition monitoring approaches, while shown to be fruitful for cables, have been shown to be insensitive to degradation of splice sleeves, which are critical to the continued performance of splices. Additional condition monitoring (CM) work is needed to evaluate methods which are sensitive to the degradation of splice components. 6. Extended Material Degradation Assessment (EMDA) knowledge gaps for electrical cables (Bernstein et al. 2014) have not been investigated for splices but may represent similar concerns such as for the accelerated aging process historically used in environmental qualification.

42 ENGINEERING↗
DOE OSTI2024

Horizontal gene transfer of the Mer operon is associated with large effects on the transcriptome and increased tolerance to mercury in nitrogen-fixing bacteria

Abstract Background Mercury (Hg) is highly toxic and has the potential to cause severe health problems for humans and foraging animals when transported into edible plant parts. Soil rhizobia that form symbiosis with legumes may possess mechanisms to prevent heavy metal translocation from roots to shoots in plants by exporting metals from nodules or compartmentalizing metal ions inside nodules. Horizontal gene transfer has potential to confer immediate de novo adaptations to stress. We used comparative genomics of high quality de novo assemblies to identify structural differences in the genomes of nitrogen-fixing rhizobia that were isolated from a mercury (Hg) mine site that show high variation in their tolerance to Hg. Results Our analyses identified multiple structurally conserved merA homologs in the genomes of Sinorhizobium medicae and Rhizobium leguminosarum but only the strains that possessed a Mer operon exhibited 10-fold increased tolerance to Hg. RNAseq analysis revealed nearly all genes in the Mer operon were significantly up-regulated in response to Hg stress in free-living conditions and in nodules. In both free-living and nodule environments, we found the Hg-tolerant strains with a Mer operon exhibited the fewest number of differentially expressed genes (DEGs) in the genome, indicating a rapid and efficient detoxification of Hg from the cells that reduced general stress responses to the Hg-treatment. Expression changes in S. medicae while in bacteroids showed that both rhizobia strain and host-plant tolerance affected the number of DEGs. Aside from Mer operon genes, nif genes which are involved in nitrogenase activity in S. medicae showed significant up-regulation in the most Hg-tolerant strain while inside the most Hg-accumulating host-plant. Transfer of a plasmid containing the Mer operon from the most tolerant strain to low-tolerant strains resulted in an immediate increase in Hg tolerance, indicating that the Mer operon is able to confer hyper tolerance to Hg. Conclusions Mer operons have not been previously reported in nitrogen-fixing rhizobia. This study demonstrates a pivotal role of the Mer operon in effective mercury detoxification and hypertolerance in nitrogen-fixing rhizobia. This finding has major implications not only for soil bioremediation, but also host plants growing in mercury contaminated soils.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1975

The lunar quarantine program

The lunar quarantine program was designed to ensure that return of lunar material represented no threat to the public health, to agriculture, or to other living resources. It established definitely that no life exists on the moon. The crews of the three lunar quarantine missions, Apollo 11, 12, and 14, experienced no health problems as a result of their exposure to lunar samples. Plants and animals also showed no adverse effects. Stringent quarantine was terminated after Apollo 14, but lunar samples continued to be protected to guarantee that scientists would receive uncontaminated materials for study.

Richard S. Johnston↗
NASA NTRS1992

Challenges of space medical operations and life sciences management

The Kennedy Space Center (KSC) has been the premier launch and landing site for America's space program since the early 1960s. Visitors are cognizant of space vehicles, processing facilities and launch pads which are treasured national resources. However, most are unaware of the unique organization which supports launch and landing activities and manages the center's occupational medicine, environmental health, ecological and environmental monitoring functions, as well as human and plant research programs. Management of this multifaceted organization can be complex because funding its different functions comes from a number of sources. Additionally the diverse disciplines of personnel present a special challenge in maintaining professional competencies while assuring efficiency in cyclical operations. This article explains the organization's structure and reviews some of its accomplishments.

Haddad, S. G.↗
NASA NTRSDate not supplied

Los Angeles Urban Development Utilizing Nasa Earth Observations to Evaluate the Impact of Tree Coverage on Urban Heat Mitigation

In recent decades, Los Angeles, California has experienced an increase in summer temperatures that has intensified the urban heat island effect. The expansion of developed areas has contributed significantly to this phenomenon by trapping and reradiating heat, posing dangerous health risks to residents. To mitigate this problem, organizations including City Plants and the L.A.’s Office of City Forest Management have implemented initiatives to promote urban greening and tree planting, which help cool down vulnerable communities. In collaboration with these partners, NASA DEVELOP has undertaken a study to investigate the role of trees in urban environments and their effectiveness in reducing local urban heat islands.

Leyla Namazie↗
DOE OSTI2023

Deep reinforcement learning for class imbalance fault diagnosis of equipment in nuclear power plants

In equipment fault diagnosis in nuclear power plants, there may be far more samples in one class (e.g., a health state) than in another class (e.g., a fault state). The distribution of data in each class is highly skewed. Most machine learning algorithms are suitable for balanced training datasets. When faced with imbalanced samples, these algorithms tend to provide good identification for the majority classes and bias for the minority classes. However, the misclassification of minority classes can lead to high costs. To address the above problem, this paper develops a deep reinforcement learning-based diagnosis method that models fault diagnosis as a sequential decision-making process. At each time step, the agent receives the state of the environment represented by the training samples and then takes a diagnosis action guided by a policy. If the action is correct/incorrect, the agent receives a positive/negative reward. The reward for minority classes is higher than that for majority classes. The agent’s goal is to obtain as many cumulative rewards as possible in the process, i.e., to identify the sample as correctly as possible. Six demonstration scenarios are constructed, depending on the selected fault datasets and the designed model structures. Experiments show that the proposed method achieves a higher weighted-averaged F1 score than the classical supervised learning method in most cases of class imbalance. Finally, the proposed method has potential applications in the field of class imbalance fault diagnosis of equipment in nuclear power plants.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2025

A Practical Comparison of Data-Driven Prognostics Methods for Energy Systems

This study explores data-driven prognostics for nuclear power plant (NPP) condensers, focusing on tube fouling. We utilized the Asherah nuclear power plant simulator (ANS) to compare four methods: Random Forest (RF), Support Vector Regressor (SVR), Fully Connected Neural Network (FCNN), and Long Short-Term Memory Neural Network (LSTM). By simulating various fouling scenarios in the ANS, we generated data with different degradation rates under transient operations. The models were trained and tested on these data, with performance evaluated visually and numerically including uncertainty assessment. The LSTM model excelled, exhibiting minimal prediction noise and the most accurate remaining useful life estimates across all degradation levels. Its ability to capture long-term dependencies and produce cleaner outputs makes it a strong candidate, although accurate training data across the entire component lifespan are crucial. The RF model emerged as a robust alternative, providing reliable predictions with high confidence. The FCNN and SVR models, while less effective overall, showed potential under specific conditions. FCNN offers a less complex alternative to LSTM and might benefit from larger datasets. SVR excels in precision when the quality of the training data is high. Furthermore, this study highlights the operational benefits of advanced prognostics in the energy sector and emphasizes the need for further research in NPP condenser health management through real-life experiments.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
NASA NTRS2020

Philadelphia Health & Air Quality: Assessing Land Surface Temperature, Vegetation Cover, and Compounding Vulnerability Factors to Identify High Priority Areas for Cooling Initiatives in Philadelphia, Pennsylvania

Heat is the leading cause of weather-related deaths in the US, with heat-related hospitalizations increasing by 2-5% between 2001-2010. In Philadelphia alone, 137 heat-related deaths were recorded between 2010-2018, while a total of 18 daily temperature records have been set since 2010. Temperature is relatively higher in cities compared to rural areas, a phenomenon known as the urban heat island effect. This effect exaggerates daytime maximum temperatures and nighttime heat retention in urban areas, which increases heat exposure in urban environments and especially impacts vulnerable populations. Vulnerability to heat-related illnesses is determined by a combination of risk factors, such as demographics, socioeconomic status, and preexisting health conditions. This project supported the Philadelphia Department of Public Health and Office of Sustainability by identifying priority areas for cooling interventions, such as heat danger educational outreach and urban tree planting. The team developed heat vulnerability scores for each census tract within Philadelphia. Remotely sensed land surface temperature, normalized difference vegetation index, normalized difference built-up index, normalized difference water index, and albedo data were calculated from Aqua Moderate Resolution Imaging Spectroradiometer and Landsat 8 Operational Land Imager/Thermal Infrared Sensor instruments. These variables were weighted against socioeconomic variables and preexisting health conditions using a principal component analysis. A total of 74 census tracts clustered were identified as high-risk areas for heat-related illnesses. 15 of these census tracts also had very low tree density (lower 20th percentile) and should be targeted for tree planting initiatives. The findings of this project will help target interventions to mitigate heat-related health issues and improve the overall wellness of Philadelphia residents.

Health & Air Quality↗
NASA NTRS2020

Philadelphia Health & Air Quality: Assessing Land Surface Temperature, Vegetation Cover, and Compounding Vulnerability Factors to Identify High Priority Areas for Cooling Initiatives in Philadelphia, Pennsylvania

Heat is the leading cause of weather-related deaths in the US, with heat-related hospitalizations increasing by 2-5% between 2001-2010. In Philadelphia alone, 137 heat-related deaths were recorded between 2010-2018, while a total of 18 daily temperature records have been set since 2010. Temperature is relatively higher in cities compared to rural areas, a phenomenon known as the urban heat island effect.This effect exaggerates daytime maximum temperatures and nighttime heat retention in urban areas, which increases heat exposure inurban environments and especially impacts vulnerable populations. Vulnerability to heat-related illnesses is determined by a combination of risk factors, such as demographics, socioeconomic status, and preexisting health conditions. This project supported the Philadelphia Department of Public Health and Office of Sustainability by identifying priority areas for cooling interventions, such as heat danger educational outreach and urban tree planting. The team developed heat vulnerability scores for each census tract within Philadelphia. Remotely sensed land surface temperature, normalized difference vegetation index, normalized difference built-up index, normalized difference water index, and albedo data were calculated from Aqua Moderate Resolution Imaging Spectroradiometer and Landsat 8 Operational Land Imager/Thermal Infrared Sensor instruments. These variables were weighted against socioeconomic variables and preexisting health conditions using a principal component analysis. A total of 74 census tracts clustered were identified as high-risk areas for heat-related illnesses. 15 of these census tracts also had very low tree density (lower 20th percentile) and should be targeted for tree planting initiatives. The findings of this project will help target interventions to mitigate heat-related health issues and improve the overall wellness of Philadelphia residents.

Health & Air Quality↗
DOE OSTI2020

Development of Tools Training and Outreach to Address Solar Glare and Flux-Related Avian Impacts

Millions of dollars and significant resources are being spent by developers of utility-scale solar photovoltaic (PV) and concentrating solar power (CSP) plants to address federal and local requirements regarding glare and avian hazards. Solar glare can occur from the glass surfaces of PV modules and from mirrors in CSP systems, which can produce safety and health risks for pilots, motorists, and residents located near these systems. In addition, concentrated solar flux at CSP plants has the potential to singe birds as they fly through regions of high solar flux. This work will develop tools to characterize and mitigate these potential hazards, which will address regulatory policies and reduce costs and efforts associated with the proposed deployment of gigawatts of solar energy systems throughout the nation. The development of standardized and publicly available tools to address these regulatory policies and ensure public and environmental safety is an appropriate role for the government.

14 SOLAR ENERGY↗
NASA NTRS2015

Using Science Skills to Understand Ecophysiology and Manage Resources

Presentation will be for a general audience and focus on plant science and ecosystem science in NASA. Examples from the projects involving the presenter will be used to illustrate. Specifically, the California Sacramento-San Joaquin River Delta project. This collaboration supports the goals of the Delta Plan in developing science-based, adaptive-management strategies. The mission is to improve reliability of water supply and restore a healthy Delta ecosystem while enhancing agriculture and recreation. NASA can contribute gap-filling science understanding of overall functions in the Delta ecosystem and assess and help develop management plans for specific issues. Airborne and satellite remote-sensing, ecosystem modeling, and biological studies provide underlying data needed by Delta stakeholders to assess and address water, ecosystem restoration, and environmental and economic impacts of potential actions in the Delta. The California Sacramento-San Joaquin River Delta, the hub for California's water supply, supports important ecosystem services for fisheries, supplies drinking water for millions, and distributes water from Northern California to agriculture and urban communities to the south; millions of people and businesses depend on Delta water. Decades of competing demands for Delta resources and year-to-year variability in precipitation has resulted in diminished overall health of the Delta. Declines in fish populations, threatened ecosystems, endangered species, invasive plants and animals, cuts in agricultural exports, and increased water conservation is the result. NASA and the USDA, building on previous collaborations, aide local Delta stakeholders in assessing and developing an invasive weed management approach. Aquatic, terrestrial, and riparian invasive weeds threaten aquatic and terrestrial ecosystem restoration efforts. Aquatic weeds are currently detrimental economically, environmentally, and sociologically in the Delta. They negatively impact the redistribution of water and disrupt the ecology of the Bay Delta food web. Filling current science gaps in the Delta Plan and improving management practices within the Delta are important to achieving the mission of improved Delta health. Methods developed can become routine land and water management tools. New high-resolution NASA sensor systems could be used to provide data packages specifically designed for water system The presenter will also speak about his personal experience and the role Delaware Valley College played in preparation for a professional career science.

Water↗
NASA NTRS1975

Contamination, misuse and abuse of the global oceans leading to ecosystem damage and destruction, health consequences and international conflict

Unregulated uses of the oceans may threaten the global ecological balance, alter plant and animal life and significantly impact the global climatic systems. Recent plans to locate large scale structures on the oceans and to exploit the mineral riches of the seas pose even greater risk to the ecological system. Finally, increasing use of the oceans for large scale transport greatly enhances the probability of collision, polluting spills and international conflict.

Source record↗
DOE OSTI2021

PhenoProfiling: Mapping phenotypic outcomes to molecular determinants of biochemical activity

The aggregate genomes of the trillions of microorganisms within soil, animal hosts, and aquatic systems encode for an extensive functional capacity for myriad biochemical activities. C, N, P, and S metabolism, synthesis of signaling molecules and vitamins, mineralization, and other activities are essential to microbe, community, and plant physiology, and more broadly to climate, water, animal, flora, and human health. The current understanding of the molecular basis for the function of microbial communities stems primarily from comparative metagenomic and metatranscriptomic studies. These same tools are employed to ascertain the impacts to the community resulting from perturbations, such as climate change, emerging pollutants, fires, and seawater infiltration for environmental communities, and dietary changes, xenobiotic exposure, and various disease states for the human gut microbiome. Such studies can identify the potential for a specific function, but they cannot determine that a particular cell is functionally active, nor can they determine the molecular architecture required for function. In short, genes and transcripts alone fail to reveal the complex subcellular arrangement of proteins and molecules that elicit a given phenotype in a microbial cell.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗