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At least 343 records · Page 19

Intercomparison of MJO Column Moist Static Energy and Water Vapor Budget among Six Modern Reanalysis Products

This study conducts an intercomparison of the column-integrated moist static energy (MSE) and water vapor budget of the Madden–Julian oscillation (MJO) among six modern global reanalysis products (RAs). Inter-RA differences in the mean MSE, MJO MSE anomalies, individual MSE budget terms, and their relative contributions to the propagation and maintenance of MJO MSE anomalies are examined. Also investigated is the relationship between the MJO column water vapor (CWV) budget residuals with the other CWV budget terms as well as with the two parameters that characterize cloud–radiation feedback and moisture–convection coupling. Results show a noticeable inter-RA spread in the mean-state MSE, especially its vertical structure. In all RAs, horizontal MSE advection dominates the propagation of the MJO MSE while column-integrated longwave radiative heating and vertical MSE advection are found to be the key processes for MJO maintenance. The MSE budget terms directly affected by the model parameterization schemes exhibit high uncertainty. The differences in anomalous vertical velocity mainly contribute to the large differences in vertical MSE advection among the RAs. The budget residuals show large inter-RA differences and have nonnegligible contributions to MJO maintenance and propagation in most RAs. RAs that underestimate (overestimate) the strength of cloud–radiation feedback and the convective moisture adjustment time scale tend to have positive (negative) MJO CWV budget residual, indicating the critical role of these processes in the maintenance of MJO CWV anomalies. Our results emphasize that a correct representation of the interactions among moisture, convection, cloud, and radiation is the key for an accurate depiction of the MJO MSE and CWV budget in RAs.

54 ENVIRONMENTAL SCIENCES↗

Modern infinitesimals and the entropy jump across an inviscid shock wave

Here, this article applies nonstandard analysis to study the generalized solutions of entropy and energy across one-dimensional shock waves in a compressible, inviscid, perfect gas. Nonstandard analysis is an area of modern mathematics that studies number systems that contain both infinitely large and infinitely small numbers. For an inviscid shock wave, it is assumed that the shock thickness occurs on an infinitesimal interval and that the jump functions for the field variables are smoothly defined on this interval. A weak converse to the existence of the entropy peak is derived and discussed. Generalized solutions of the Euler equations for entropy and energy are then derived for both theoretical and realistic normalized velocity profiles.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Microtomography of the Baltic amber tick Ixodes succineus reveals affinities with the modern Asian disease vector Ixodes ovatus

Background: Fossil ticks are extremely rare, whereby Ixodes succineus Weidner, 1964 from Eocene (ca. 44–49 Ma) Baltic amber is one of the oldest examples of a living hard tick genus (Ixodida: Ixodidae). Previous work suggested it was most closely related to the modern and widespread European sheep tick Ixodes ricinus (Linneaus, 1758). Results: Restudy using phase contrast synchrotron x-ray tomography yielded images of exceptional quality. These confirm the fossil’s referral to Ixodes Latreille, 1795, but the characters resolved here suggest instead affinities with the Asian subgenus Partipalpiger Hoogstraal et al., 1973 and its single living (and medically significant) species Ixodes ovatus Neumann, 1899. We redescribe the amber fossil here as Ixodes (Partipalpiger) succineus. Conclusions: Our data suggest that Ixodes ricinus is unlikely to be directly derived from Weidner’s amber species, but instead reveals that the Partipalpiger lineage was originally more widely distributed across the northern hemisphere. The closeness of Ixodes (P.) succineus to a living vector of a wide range of pathogens offers the potential to correlate its spatial and temporal position (northern Europe, nearly 50 million years ago) with the estimated origination dates of various tick-borne diseases.

Arachnida, Parasitiformes, Ixodida, parasite, vect↗

Analysis of a Modern Hybrid and an Ancient Sugarcane Implicates a Complex Interplay of Factors in Affecting Recalcitrance to Cellulosic Ethanol Production

Abundant evidence exists to support a role for lignin as an important element in biomass recalcitrance. However, several independent studies have also shown that factors apart from lignin are also relevant and overall, the relative importance of different recalcitrance traits remains in dispute. In this study we used two genetically distant sugarcane genotypes, and performed a correlational study with the variation in anatomical parameters, cell wall composition, and recalcitrance factors between these genotypes. In addition we also tracked alterations in these characteristics in internodes at different stages of development. Significant differences in the development of the culm between the genotypes were associated with clear differential distributions of lignin content and composition that were not correlated with saccharification and fermentation yield. Given the strong influence of the environment on lignin content and composition, we hypothesized that sampling within a single plant could allow us to more easily interpret recalcitrance and changes in lignin biosynthesis than analysing variations between different genotypes with extensive changes in plant morphology and culm anatomy. The syringyl/guaiacyl (S/G) ratio was higher in the oldest internode of the modern genotype, but S/G ratio was not correlated with enzymatic hydrolysis yield nor fermentation efficiency. Curiously we observed a strong positive correlation between ferulate ester level and cellulose conversion efficiency. Together, these data support the hypothesis that biomass enzymatic hydrolysis recalcitrance is governed by a quantitative heritage rather than a single trait.

59 BASIC BIOLOGICAL SCIENCES↗

The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases

Model organisms are essential experimental platforms for discovering gene functions, defining protein and genetic networks, uncovering functional consequences of human genome variation, and for modeling human disease. For decades, researchers who use model organisms have relied on Model Organism Databases (MODs) and the Gene Ontology Consortium (GOC) for expertly curated annotations, and for access to integrated genomic and biological information obtained from the scientific literature and public data archives. Through the development and enforcement of data and semantic standards, these genome resources provide rapid access to the collected knowledge of model organisms in human readable and computation-ready formats that would otherwise require countless hours for individual researchers to assemble on their own. Since their inception, the MODs for the predominant biomedical model organisms [Mus sp (laboratory mouse), Saccharomyces cerevisiae, Drosophila melanogaster, Caenorhabditis elegans, Danio rerio, and Rattus norvegicus] along with the GOC have operated as a network of independent, highly collaborative genome resources. In 2016, these six MODs and the GOC joined forces as the Alliance of Genome Resources (the Alliance). By implementing shared programmatic access methods and data-specific web pages with a unified "look and feel," the Alliance is tackling barriers that have limited the ability of researchers to easily compare common data types and annotations across model organisms. To adapt to the rapidly changing landscape for evaluating and funding core data resources, the Alliance is building a modern, extensible, and operationally efficient "knowledge commons" for model organisms using shared, modular infrastructure.

59 BASIC BIOLOGICAL SCIENCES↗

Modernization of PLC-Based Control Systems at SNS

When the SNS site was built around 20 years ago, the Conventional Facilities (CF) control systems were de-signed using 2 communication protocols to allow pro-grammable logic controllers (PLCs) to interface with motors, variable frequency drives (VFDs), and remote input and output (I/O) devices. The protocol chosen to control motors and VFDs is DeviceNet, a CANbus-based protocol developed by Allen-Bradley, a subsidiary of Rockwell Automation. The protocol chosen to communi-cate with remote I/O is ControlNet, another protocol developed by Allen-Bradley. Both of these protocols are obsolete and present reliability and maintainability is-sues, particularly DeviceNet. As the Control Systems Section at SNS is working to modernize control systems throughout the machine, a major goal for PLC-based systems is to remove the obsolete communication proto-cols in favor of standard, ubiquitous Ethernet. To this end, any new VFDs installed use Ethernet communica-tion. Many VFDs are currently being replaced in the Central Utilities Building (CUB) and the Central Exhaust Facility (CEF) and are being removed from DeviceNet in favor of Ethernet communication. Planning is underway to retrofit Eaton Intelligent Technology motor control centers (MCCs) in the Target Building to remove particu-larly troublesome DeviceNet adaptors and replace them with Ethernet adaptors for each motor starter. The Con-trolNet network in the CUB has been demolished, with I/O drops integrated into a local Ethernet network, im-proving sustainability and maintainability.

Beaushaw, Isaiah [ORNL]↗

An Agile/XP software development process for modernizing the accelerator control system at Fermilab

Fermilab is undergoing the most ambitious upgrade to its accelerator control system of the 21st century. As part of the ACORN project, hundreds of legacy control system applications written in C/C++ will be re-imagined and developed from the ground up. In addition, applications to support Fermilab’s new super-conducting linear accelerator are already under construction. To manage the development of modern controls applications, the Controls department has adopted an Agile software development process based on eXtreme Programming. In this paper we will describe our process and detail our experience applying it to the development of two case studies.

Diamond, John [Fermilab]↗

Hydroxylpyromorphite, a mineral important to lead remediation: Modern description and characterization

Abstract Hydroxylpyromorphite, Pb5(PO4)3(OH), has been documented in the literature as a synthetic and naturally occurring phase for some time but has not previously been formally described as a mineral. It is fully described here for the first time using crystals collected underground in the Copps mine, Gogebic County, Michigan. Hydroxylpyromorphite occurs as aggregates of randomly oriented hexagonal prisms, primarily between about 20–35 μm in length and 6–10 μm in diameter. The mineral is colorless and translucent with vitreous luster and white streak. The Mohs hardness is ~3½–4; the tenacity is brittle, the fracture is irregular, and indistinct cleavage was observed on {001}. Electron microprobe analyses provided the empirical formula Pb4.97(PO4)3(OH0.69F0.33Cl0.06)Σ1.08. The calculated density using the measured composition is 7.32 g/cm3. Powder X-ray diffraction data for the type material is compared to data previously reported for hydroxylpyromorphite from the talc mine at Rabenwald, Austria, and from Whytes Cleuch, Wanlockhead, Scotland. Hydroxylpyromorphite is hexagonal, P63/m, at 100 K, a = 9.7872(14), c = 7.3070(10) Å, V = 606.16(19) Å3, and Z = 2. The structure [R1 = 0.0181 for 494 F>4σ(F) reflections] reveals that hydroxylpyromorphite adopts a column anion arrangement distinct from other members of the apatite supergroup due to the presence of fluorine and steric constraints imposed by stereoactive lone-pair electrons of Pb2+ cations. The F– anion sites are displaced slightly from hydroxyl oxygen anions, which allows for stronger hydrogen-bonding interactions that may in turn stabilize the observed column-anion arrangement and overall structure. Our modern characterization of hydroxylpyromorphite provides deeper understanding to a mineral useful for remediation of lead-contaminated water.

Geochemistry & Geophysics↗

Many-gluon tree amplitudes on modern GPUs: A case study for novel event generators

The compute efficiency of Monte-Carlo event generators for the Large Hadron Collider is expected to become a major bottleneck for simulations in the high-luminosity phase. Aiming at the development of a full-fledged generator for modern GPUs, we study the performance of various recursive strategies to compute multi-gluon tree-level amplitudes. We investigate the scaling of the algorithms on both CPU and GPU hardware. Finally, we provide practical recommendations as well as baseline implementations for the development of future simulation programs. The GPU implementations can be found at: https://www.gitlab.com/ebothmann/blockgen-archive.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Modernization of NJOY: Creating NJOY21

NJOY21 will be the gold standard of nuclear data processing codes by providing a trusted and verified processing code that is fast, flexible, easy to use and customize, and capable of handling both modern and established nuclear data formats.

97 MATHEMATICS AND COMPUTING↗

Biodiesel Performance with Modern Engines. Cooperative Research and Development Final Report, CRADA Number CRD-05-153

NREL and the National Biodiesel Board (NBB) will work cooperatively to assess the effects of biodiesel blends on the performance of modern diesel engines and emissions control systems meeting increasingly strict emissions standards. This work will include research to understand the impact of biodiesel blends on the operation and durability of particle filters and NOx control sorbents/catalysts, to quantify the effect on emission control systems performance, and to understand effects on engine component durability. Work to assess the impact of biodiesel blends on real world fleet operations will be performed. Also, research to develop appropriate ASTM standards for biodiesel quality and stability will be conducted. The cooperative project will involve engine testing and fleet evaluation studies at NREL using biodiesel from a variety of sources. In addition, NREL will work with NBB to set up an Industrial Steering Committee to design the scope for the various projects and to provide technical oversight to these projects. NREL and NBB will cooperatively communicate the study results to as broad an audience as possible.

30 DIRECT ENERGY CONVERSION↗

Foundational Report Series: Advanced Distribution Management Systems for Grid Modernization, DMS Integration of Distributed Energy Resources and Microgrids

Deregulation of the electric utility industry, environmental concerns associated with traditional fossil fuel-based power plants, volatility of electric energy costs, Federal and State regulatory support of “green” energy, and rapid technological developments all support the growth of Distributed Energy Resources (DERs) in electric utility systems and ensure an important role for DERs in the smart grid and other aspects of modern utilities. DERs include distributed generation (DG) systems, such as renewables; controllable loads (also known as demand response); and energy storage systems. This report describes the role of aggregators of DERs in providing optimal services to distribution networks, through DER monitoring and control systems—collectively referred to as a Distributed Energy Resource Management System (DERMS)—and microgrids in various configurations.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Lubricant Formulations to Enhance Engine Efficiency in Modern Internal Combustion Engines

The research program presented aimed to investigate, develop, and demonstrate low-friction, environmentally-friendly and commercially-feasible lubricant formulations that would significantly improve the mechanical efficiency of modern engines without incurring increased wear, emissions or deterioration of the emission-aftertreatment system.

33 ADVANCED PROPULSION SYSTEMS↗

TCIA Secure Cyber Critical Infrastructure Modernization.

The Sandia National Laboratories (Sandia Labs) tribal cyber infrastructure assurance initiative was developed in response to growing national cybersecurity concerns in the the sixteen Department of Homeland Security (DHS) defined critical infrastructure sectors1. Technical assistance is provided for the secure modernization of critical infrastructure and key resources from a cyber-ecosystem perspective with an emphasis on enhanced security, resilience, and protection. Our purpose is to address national critical infrastructure challenges as a shared responsibility.

97 MATHEMATICS AND COMPUTING↗

Relocation of the Hyperspectral Confocal Fluorescence Microscope to the Chesterfield Site and Implementation of a Modernization Upgrade

Sandia National Laboratories and the Monsanto Company collaborated to relocate Monstanto's hyperspectral microscope to Monsanto's Chesterfield site, modernize both Monsanto's and SNL's high throughput hyperspectral microscopes by replacing dated hardware with current state-of-the-art components; and improve the analysis software.

97 MATHEMATICS AND COMPUTING↗

LLNL Exascale Computing Facility Modernization (Final Value Engineering Study Report)

A Value Engineering (VE) study, sponsored by the Lawrence Livermore National Security (LLNS) group and facilitated by Value Management Strategies, Inc., was conducted for Lawrence Livermore National Laboratory (LLNL) Exascale Computing Facility Modernization (ECFM) project located in Livermore, California. The study was conducted September 25-27, 2018. This Executive Summary provides an overview of the project, key findings, and the results of the VE study.

97 MATHEMATICS AND COMPUTING↗

Modernization of Technical Requirements for Licensing of Advanced Non-Light Water Reactors: Selection and Evaluation of Licensing Basis Events

This report, “Modernization of Technical Requirements for Licensing of Advanced Non-Light Water Reactors: Selection and Evaluation of Licensing Basis Events,” represents a key element in the development of a methodology for the efficient licensing of advanced non-light water reactors (non-LWRs).

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗