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At least 343 records · Page 19

GeneLab: Omics Database for Spaceflight Experiments

Motivation - To curate and organize expensive spaceflight experiments conducted aboard space stations and maximize the scientific return of investment, while democratizing access to vast amounts of spaceflight related omics data generated from several model organisms. Results - The GeneLab Data System (GLDS) is an open access database containing fully coordinated and curated "omics" (genomics, transcriptomics, proteomics, metabolomics) data, detailed metadata and radiation dosimetry for a variety of model organisms. GLDS is supported by an integrated data system allowing federated search across several public bioinformatics repositories. Archived datasets can be queried using full-text search (e.g., keywords, Boolean and wildcards) and results can be sorted in multifactorial manner using assistive filters. GLDS also provides a collaborative platform built on GenomeSpace for sharing files and analyses with collaborators. It currently houses 172 datasets and supports standard guidelines for submission of datasets, MIAME (for microarray), ENCODE Consortium Guidelines (for RNA-seq) and MIAPE Guidelines (for proteomics).

omics↗

WGISS-46 ACCESS Section: IDN Report

The objective of this presentation is to provide IDN updates on features and activities to the Committee on Earth Observation Satellites (CEOS) Working Group on Information Systems and Services (WGISS) and provider community. The following topics will be will be discussed during the presentation: Overview of NASA's Vision of Services (UMM-S), Migration of IDN SERFs to UMM-S, Metadata Management Tool (MMT): Successor to DocBuilder, DocBuilder-10: Create/Update Dataset Records, Transition of DIF-9 to DIF-10, Schedule for UMM-C and GCMD/IDN Keywords, IDN's WGISS/WGCV Joint Session: Collaborative Actions.

Committee on Earth Observation Satellites↗

Enriching the Twitter Stream Increasing Data Mining Yield and Quality Using Machine Learning

Social media data streams are important sources of real-time and historical global information for science applications. At the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC), we are exploring the Twitter data stream for its potential in augmenting the validation program of NASA Earth science missions, specifically the Global Precipitation Measurement (GPM) mission. We have implemented a tweet processing infrastructure that outputs classified precipitation tweets. Inputs are "passive" tweets, along with a smaller number of tweets from "active" participants, i.e., those knowingly contributing to our effort. The "active" tweets, presumably of higher quality, enrich the Twitter stream. "Active" sources include data scraped from other social media (e.g., public Facebook posts) and data from existing crowdsourcing programs (e.g., mPING reports). In addition, there is likely relevant precipitation information in images and documents that are the end points of links often included in tweets. Information derived from these "active" sources could then be tweeted into the Twitter stream, thus enriching its quality. The objective of our current work is to mine these tweet­ linked images and documents, using neural networks, to increase the information content and quality related to precipitation. For images, we classified them as either precipitation-related or not. For training and validation, we used images obtained via the Google custom search API. We created two models: (1) by training a simple Convolutional Neural Network and (2) by using transfer learning principles to adapt a pre-trained object recognition model. For documents, both those linked to tweets and the tweet contents, we trained Hierarchical Attention Networks to determine precipitation occurrence, type, and intensity. For training and validation, we used a keyword-filtered tweet data set labelled with ground truth data from Dark Sky (an API to retrieve weather-related labels) and the National Severe Storms Laboratory's Multi­ Radar/Multi-Sensor (MRMS) system. Our results demonstrated the efficacy of our machine learning approaches for enriching the Twitter stream, to derive information potentially useful for validation of earth science satellite data.

Albayrak, Arif↗

A New Laser Beam Pointing Method Using Laser Arrays

A new method is described for optical data transmissions from satellites using laser arrays for laser beam pointing. It combines a lens system and a vertical-cavity surface-emitting laser (VCSEL)/Photodetector Array, both mature technologies, in a novel way. This system is applied to satellites in low-Earth orbit, (LEO). It can replace current architectures which use dynamical systems, (i.e., moving parts) to point the laser, and which may use vibration isolation platforms. Results of computer simulations show diffraction limited beam propagation. Possible additional applications are to planetary distances (deep space optical communications, (DSOC)), to optical multiple access, (OMA), to communication between a constellation of close satellites, and to satellites that use modulating retro-reflectors. Keywords: laser beam pointing, free-space optical communication, low-Earth orbit (LEO) data communications, integrated VCSEL/ photodetector arrays, deep space optical communications (DSOC), optical multiple access (OMA), constellation of close satellites, modulating retro-reflectors.

Goorjian, P. M.↗

Long Term Potential Evapotranspiration and Evapotranspiration Data and Services at NASA GES DISC

Recently, the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) has released global land 3-hourly Potential Evapotranspiration and Supporting Forcing Data Version-1 (PET_PU_3H025.001), at 0.25x0.25 degree spatial resolution, spanning the 23 year period from 1984 to 2006. The Version-2 will be released in the near future, covering longer time period. This dataset was generated by Professor Justin Sheffield through NASA Making Earth System Data Records for Use in Research Environments (MEaSUREs) project. Potential evapotranspiration (PET) is a representation of the environmental demand for evapotranspiration (ET). ET and PET are important part of the global water cycle estimation, and are also critical to advance our understanding of the climate system. NASA GES DISC archives and distributes various global and regional ET datasets from several projects, for example, Land Data Assimilation System (LDAS), Modern-Era Retrospective analysis for Research and Applications, Version 2 (MERRA-2), other MEaSUREs Projects, such as Land Surface Atmospheric Boundary Interaction Product by William Rossow; and SRB/GEWEX evapotranspiration (Penman-Monteith) by Eric F. Wood. In this presentation, we will overview all available PET and ET datasets and services at GES DISC. As examples, climatology and some seasonal characteristics of PET and selected ET will be shown. The data can be accessed from NASA GES DISC (https://disc.gsfc.nasa.gov/) by searching keyword "evapotranspiration".

Shen, Suhung↗

Integrated Analysis of Multiple User Metrics - A “Sequel”; and Introducing the Google Analytic

For decades, the Goddard Earth Sciences Data and Information Services Center (GES DISC) has archived and distributed enormous volumes of NASA Earth science data (accompanied with many developed tools and services) to various research/applications communities and the general public. Being “immersed” in the Big Data era, we have inevitably faced the challenges of our continually increasing archived data in both volume and variety, as well as enhanced user needs and demands. In recent years, we have actively analyzed different types of user metrics, such as operational distribution metrics (recording numbers of distinct users and downloaded data files, size of distributed data volume): user publication metrics (mining info from our Giovanni users’ publications): and Bugzilla metrics (collecting info from user questions or feedback from user assistance tickets). Such metrics have helped us achieve a better understanding of user needs, demands, characteristics, and behaviors, which has then helped us improve our user services. Now we will present a “Sequel” of integrated analysis of multiple metrics at the GES DISC by introducing and adding one new kind of metrics acquired via utilizing our recently implemented Google Analytic 360 suite. Several “newer” reports, e.g., “What web site features and links are the most popular (and least)?” and “What are the top 25 dataset Keyword searches?” retrieved from this new metrics set will be presented, along with the aforementioned “traditional” metrics results.

Shie, Chung-Lin↗

Near 40 Years MERRA-2 Data at NASA GES DISC -Opportunity and Challenge to Support Extremes Study

To the end of 2019, 40 years NASA climate reanalysis data sets from the Modern Era Retrospective-analysis for Research and Applications, Version 2 (MERRA-2) will be available at NASA Goddard Earth Sciences Data and Information Services Center (GES DISC). MERRA-2 consists atmosphere, land, and ocean data, which may be used for the studies ranging from the short scale weather events to the large scale decadal vulnerabilities. The hourly products, such as precipitation, soil moisture, temperature, and aerosols etc., have been used widely to study extreme events.In supporting users from broad communities, GES DISC have developed various data access services, including subsetter for downloading only data of interest with preferred format; OPeNDAP - for machine-to-machine data access; and Giovanni- for online visualization and analysis, etc. A big challenge for extreme study is to downloading and processing long-term hourly or daily data. The data downloading performance is not very satisfied by many users with current services and the native archived data structure. Late June 2019, many people in Europe had experienced extreme heat waves. The temperatures in several countries exceeded 40°C (104°F). For example, MERRA-2 shows that the near surface daily maximum temperature of June 28 2019 over Marseille, a city in southern France, reached 41.1 °C (106°F), which is the record breaking temperature in the last 40 years. GES DISC is working together with domain science experts to improve the performance of long time series access, making analysis ready data sets in supporting application researches, such as extreme study. In this presentation, using Europe heat wave as an example, we will show prototype of the in developing service for finding extremes from near 40 years MERRA-2 data at a given location. MERRA-2 data can be accessed from NASA GES DISC(https://disc.gsfc.nasa.gov/ ) by search keyword "MERRA-2".

Shen, Suhung↗

Quantitative Technology Assessment in Space Mission Analysis

New technologies will need to be developed to create feasible concepts for NASA's ambitious missions of the future, but quantitative assessments of the impacts that technologies have on systems or architectures are sporadic and often inadequate. The Space Mission Analysis Branch at NASA's Langley Research Center is developing a quantitative technology assessment framework to address this issue with a vision of being able to understand the mission and system architecture impacts of technology development activities. A phased approach is being pursued to answer technology needs assessment and technology forecasting questions. First, the integration of subject matter experts, data collection, and data analysis techniques ensures that the framework is accessible and analyzable. Second, systems analysis determines the impact of key technologies from the first phase on systems, architectures, and campaigns. The goal of a quantitative technology assessment framework is to accelerate technology assessments, to improve the accuracy of those assessments, and to provide deeper insights into the impact of new technologies. Keywords: technology assessment, data analysis, systems analysis.

Arney, Dale C.↗

NASA's Human Lunar Landing Strategy

In early 2020, NASA's Human Landing System Program made awards to a set of American companies to compete for the design, delivery and demonstration of an integrated human landing system to land the next Americans near the South Pole of the Moon by 2024. Awards were made utilizing the NextSTEP Broad Agency Announcement procurement mechanism and kicked off a seven-month Certification Baseline Review, leading up to a Continuation Review and possible down-select by NASA at the end of 2020. This paper discusses the work that has been done thus far for the rapid development of a human landing system to safely carry the first woman and the next man to the lunar surface. It will also provide a preview of the work that remains ahead for the program. Keywords: Artemis, Human Landing System, Mars, Moon, Propulsion

Lisa Watson-Morgan↗

A Hybrid Approach to Labeling Datasets in Earth Science Publications

NASA Data Centers provide the public with thousands of datasets that result in published papers, reports, and conference proceedings. Collecting accurate metrics on usage of these datasets is key to connecting different areas of knowledge and evaluating the datasets’ impact. While most of the datasets have Digital Object Identifiers (DOIs) assigned, most publications do not cite them hampering the automated search of these publications. Instead, articles mention attributes like organization, instrument, mission, variable, or a publication describing the dataset. Often only domain experts can deduce the dataset that was used in the publication text. The lack of a citation slows the spread of information and reduces the research’s impact. With thousands of papers produced each year, an automated means of labeling datasets is critical. This paper explores a hybrid approach of heuristics and a Natural Language Processing (NLP) Named Entity Recognition (NER) model to find and label the datasets used within Earth Science papers. Heuristics are used to produce the labelled sentences and any potential dataset candidates that can be derived from a sentence. The heuristic labels the sentences with the names of mission, instrument, re-analysis models, and science keywords taken from the Global Change Master Directory (GCMD) ontology. Additionally, it uses those labels to generate the dataset citation candidates. If the mission, instrument, and variable are sufficient to create the citation for the dataset the citation and the label the domain expert reviews the output without going through the NLP model. If the extracted label is not sufficient to label the dataset on its own, the sentence and its associated dataset labels will be inputted into the NER model. The model outputs the labeled sentence and the potential dataset candidates with their associated probabilities. The domain expert then reviews the NER model’s output and the correct labels are determined. The newly labelled papers can then be used as additional training data. This creates an iterative process for the approach to continuously improve. Because all the possible mentions are gathered by the model, the domain expert can quickly and easily label the papers resulting in large time savings.

Jacob Atkins↗

Application of ML/AI for Identifying Earth Science Datasets in Research Publications

NASA Data Active Archive Centers, or DAACs, ingest, store and distribute data acquired from satellites, ground systems as well as modelling data. These data are organized by the datasets, each presenting collection of files usually associated with the certain mission, instrument, processing level, parameter(s), algorithm and/or model. The number of datasets offered by a single DAAC to the public varies. GES DISC, for example, currently offers for public use approximately ~1,300 datasets. While each publicly offered dataset comes with supporting documentation, it is challenging for novice and even experienced scientists to navigate among the datasets that offer similar parameters to find the datasets for their particular research application. Supplying dataset documentation with the scientific paper citations that refer to that dataset provides means for the dataset users to educate themselves with the application research that dataset is being used in. Collecting citations of the papers that use the datasets for their research yield valuable insights into application areas of those datasets, information about usage of the dataset groups for specific applications and those application topics. It also gives insights into the “deep metrics” of the dataset usage, as opposed to the common metrics of the dataset usage such as number of users who downloaded the dataset files and volumes of downloaded data. Association of a certain scientific paper with the dataset(s) presents a challenge because most of the paper authors do not properly cite the datasets, datasets usually have cryptic names and Digital Object Identifiers (DOIs) that are used for dataset identification were assigned to the datasets only few years ago. Simple Google or online library search do not provide even meaningful fraction of the results when performed by the dataset name or DOI, however they provide too many results when the search is done by more broader terms such as mission and instrument names. Attempts to create an AI system capable to identify dataset in the scientific papers have already been made using neural networks classifiers on the basis of the dataset mission, instrument and variable name. This method was applied to NASA SEDAC, which has 41 datasets in total. In GES DISC there can be as many as ~100 datasets per mission/instrument with some of the datasets consisting of multiple variables so there is a need for more differentiating parameters for dataset identification in the paper. The approach we are currently investigating is creating AI classifiers that are based on multiple dataset features, or keywords, extracted from the NASA Earthdata Common Dataset Repository (CMR). The features are weighted based on how precisely they can identify a dataset. The classifier uses preprocessed paper text as input and searches for the CMR datasets whose feature sets are the closest to the feature sets contained in the paper. The challenges of dataset identification include variety of ways the paper authors describe the datasets in their papers and incomplete tagging of the CMR dataset description (DIFs).

Irina Gerasimov↗

Search Enhancements using Natural Language Processing Techniques

NASA Goddard Earth Sciences Data and Information Services Center (GESDISC) is one of the 12 NASA Science Mission Directorate Data Centers. The main goal of GESDISC is to provide earth science data, information, and services to the earth science data community. Consequently, data discovery is at the center of our mission and our search engine is the primary tool for our users to interact, find, and access our data. Existing search approaches are largely focused on hard-matching of keywords in the search query with dataset metadata. Here we propose to expand the search by introducing a complementary natural language processing (NLP) search. At the heart of our proposed NLP search, we trained a joint embedding using scientific text corpus and a curated set of dataset metadata. The embedding learns the association between words in our dataset metadata and those of the scientific text corpus. This enables us to go beyond simple hard-matching of a query and data set metadata and have a notion of “similarity” between the search query and the datasets. We further integrated our NLP search into the Elastic Search (ES) framework leveraging similarity search capabilities offered through the “dense_vector” field type. Our preliminary evaluations show that our proposed NLP search has the potential to be utilized to complement the existing search engine and serve as a base for a dataset recommendation system.

Armin Mehrabian↗

Modal Correlation of Complex Aerospace Joints Using Automated Variable Substitution

A critical task involved with being able to predict flight loads accurately in aerospace finite element models (FEMs) is the prior verification of the FEMs by conducting modal survey testing (MST). Experience comparing dynamic response of initial FEMs to MST data tends to demonstrate that FEMs can have unacceptable accuracy even when best modeling practices are followed. One inherent source of inaccuracy in linear dynamic FEMs is the modeling of nonlinear joints with mechanisms such as spherical bearings. These joints are usually designed to freely translate or rotate under the high levels of loading experienced in flight. Engineers who create linear FEMs conventionally model these joints without any stiffness in the mechanism degrees of freedom to meet this design intent. However, inaccuracy is observed during test validation of these FEMs, which usually relies on low-level force excitation orders of magnitude below flight load levels. This low-level modal test rarely overcomes the joint friction that is present, and thus the mechanism joints are able to react loads. This divide between the test results and the FEM creates a significant challenge to the engineer who is performing the correlation, in that the engineer has no basis for what stiffness value should be used to make the FEM match the test results. A compounding challenge is that complicated built-up aerospace structures commonly have multiple joints through a load path where each joint will “stick” and “slip” at different levels of force input. Explicitly matching the dynamics of a system containing these nonlinear mechanisms would require a nonlinear FEM, which is prohibitively costly for dynamic simulations of most aerospace systems. The objective of this paper is to present a workflow that can efficiently cycle through many iterations of a FEM, allowing a Monte Carlo style examination of the design space to identify candidate stiffness values for nonlinear mechanism joints. The outlined approach is specific to MSC Nastran and utilizes MSC Nastran’s symbolic substitution capabilities, coupled with the IMAT™ and Attune™ software packages developed by ATA Engineering, Inc. (ATA). The workflow is demonstrated with a case study from the correlation effort for The Boeing Company’s Crew Space Transportation (CST)-100 Starliner FEM. Keywords: Correlation, MSC Nastran, IMAT™, Attune™, Finite Element Model, Modal Testing

Correlation↗

Populating a Graph Database to Run a Usage-Based Discovery Tool

Most dataset discovery tools for Earth Observation data rely on descriptions and other metadata of the datasets, using keyword searches or attribute filtering to determine relevance. However, these descriptions often do not include the potential uses of the data. Thus, a user working on floods will rarely see few if any rainfall datasets show up in such a search. The Usage Based Discovery tool, on the other hand, offers usage instances to the user, either research articles or applications, along with the datasets that those usage instances used. This allows a user, particularly one new to the world of Earth Observation data, to investigate which datasets are used in similar cases. The information that powers Usage-Based Discovery is a graph database of relationships of usage to dataset and usage to topic, allowing the user to narrow their search for similar cases. In order to scale out to a graph database rich enough to provide a satisfactory user experience, we combine manual and automated processes to populate the graph. The initial content of the graph has been seeded primarily via human-aided data curation methods, using sites like Google Scholar. To scale up this effort, we’ve employed crowdsourcing. It is easy for anyone to contribute to our graph using their Open Researcher and Contributor Identifier for authorization. We’re now experimenting with Machine Learning and Natural Language Processing to help automate population of the graph, starting with the classification of research articles by topic. Finding adequate training data in the absence of a comprehensive and open research article API continues to be a significant challenge.

Vincent Inverso↗

Infusion of AI/ML Technology into Operational NASA Data Systems

NASA has been developing a variety of Artificial Intelligence / Machine Learning technologies related to Earth Observations. In most cases, the full value of such a technology is realized when it is infused into an operational system. NASA’s Earth Science Data Systems program has been formulating repeatable methods to execute technology infusion. These efforts include the Advancing Collaborative Connections for Earth System Science (ACCESS) program, a Technology Infusion Playbook, and an assemblage of working groups investigating methods for infusion collaboration, community development, and capacity building. ESDS has also been executing a pathfinder activity to infuse a machine-learning-driven recommender of science keywords for Earth Observation datasets, which is intended to be used for metadata curation in the Earth Observation System Data and Information System.

C Lynnes↗

Bringing Research to New Heights: How CASEI Integrates Data Curation, Discovery, and Education in Earth and Atmospheric Science

A challenging aspect of any project is finding all the relevant data and information needed to address the research objective. Searching for data and its contextual metadata can become overwhelming for both undergraduate and graduate students, potentially hindering their work and affecting the scientific discoveries that could be made in the long run. To ease this, the NASA Airborne Data Management Group (ADMG), part of the Interagency Implementation and Advanced Concepts Team (IMPACT), has developed the new Catalog of Archived Suborbital Earth science Investigations (CASEI). CASEI includes a web portal that users, be they professionals or students, can use to search, browse, discover, and locate relevant observations associated with NASA’s airborne and field campaigns. Users are able to query data in a variety of ways (via keywords, locations, timeframe, etc) from one online portal, minimizing the amount of time needed to search. CASEI also allows access to key contextual metadata and data from a wide array of Earth and Atmospheric Science topics such as aerosols and boundary layer processes, as well as ice and glacial properties or processes. Users are able to access the data via DOI links to data set landing pages. This presentation will demonstrate how CASEI can be used for classwork and student research. Teachers can provide CASEI to their students as a tool for their studies, or use it to find data themselves while constructing their curriculums. Additionally, users can leverage CASEI to learn about NASA’s Earth and Atmospheric Science research efforts and to find data relevant for assignments or other research projects. The metadata in CASEI has been carefully curated, and highlights important information about the campaigns and their data. Students can explore and learn about the scientific objectives of the campaigns, as well as descriptions of the campaign’s best research days. Having access to contextual metadata in an easy to understand way can help plant the seeds of new ideas in students at any point in their academic journey. From class projects to theses/dissertations and other research, CASEI is a valuable emerging tool for data discovery, giving access to all users and guiding researchers to NASA’s unique airborne data to answer the burning Earth Science questions of our time.

education↗

Language Model For Earth Science: Exploring Potential Downstream Applications As Well As Current Challenges

The use of deep learning techniques to build transformer language models such as SciBERT and GPT3 have transformed the natural language technology (NLT) landscape. These new NLTs are being used in speech to text and vice versa, auto-mated text classification, sentiment analysis, topic modeling, text summarization, and cognitive assistants. While Earth science has no shortage of unstructured data such as journal and conference papers, little efforts have focused on harnessing NLTs for knowledge extraction and supporting the scientific process. This paper surveys the use of language models in different science. BERT-E, a new Earth science-specific language model, is presented. BERT-E is generated using a transfer learning solution. A language model that has already been trained for general Science (SciBERT) is fine-tuned using abstracts and full text extracted from various Earth science-related articles. A downstream keywords classification application is used for evaluation, and the use of BERT-E shows improved performance. The need to develop a robust set of benchmarks in evaluating the language model such as BERT-E is discussed. Finally, example applications are presented to inspire additional ideas for applications using domain-specific language models.

R Ramachandran↗

Towards Automated Analytics of Research Publications

For readers of scientific publications it remains a big challenge to unambiguously relate the published research with the data used. To a substantial degree it is attributed to authors, journals, editors, and reviewers not prioritizing correct data citation, which impacts traceability, repeatability, and giving credits to published authors and their funding sources. Furthermore, uniform classification of the content of the published research is hampered by journals using journal specific topics and letting authors to assign free text keywords to their papers. We demonstrate automated analytics methods for extracting and relating datasets used and the research application areas by processing 1,300 research papers that referenced the NASA Giovanni service (but probably not the datasets in particular) as supporting their publication process. This presentation was given during the 2022 ESIP January meeting held virtually in January 2022.

Irina Gerasimov↗