SEARCH · Engineering Papers

Results for “variational inference”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 325 records · Page 18

All sources NASA NTRS DOE OSTI

NASA NTRS1973

A first look at atmospheric dynamics and temperature variations on Titan.

Pollack (1973) has used a radiative equilibrium model to match radiometric data for Titan and infers the atmospheric mass, composition, opacity, and gross vertical thermal structure. These results are used to estimate the atmospheric temperature variations by means of scaling analysis, taking into account dynamics both for a baroclinic wave regime and for an axially symmetric circulation regime. Horizontal temperature variations of the atmosphere and surface are found to be very small, and the circulation is found to be weak and probably axially symmetric. The small temperature variations appear to preclude the storage of volatiles in polar caps, so that the present atmospheric methane content may be due to a balance between outgassing and photodissociation.

Leovy, C. B.↗

NASA NTRS1990

Through-the-thickness fatigue crack closure behavior in an aluminum alloy

The variation in fatigue crack closure behavior across the thickness of aluminum alloy specimens was investigated. The specimen geometries examined were the middle crack tension M(T) and compact tension C(T). The fatigue crack closure behavior was determined using remote displacement and strain gages, near tip strain gages, and fatigue striations. A hybrid experimental/numerical method was also used to infer the crack opening loads. The results indicate a variation in crack opening load, of 0.2 in the specimen interior to 0.4 to 0.5 at the surface.

Dawicke, D. S.↗

NASA NTRS1990

Through-the-thickness fatigue crack closure behavior in an aluminum alloy

Dawicke, D. S.↗

DOE OSTI2012

Uberon, an integrative multi-species anatomy ontology

We present Uberon, an integrated cross-species ontology consisting of over 6,500 classes representing a variety of anatomical entities, organized according to traditional anatomical classification criteria. The ontology represents structures in a species-neutral way and includes extensive associations to existing species-centric anatomical ontologies, allowing integration of model organism and human data. Uberon provides a necessary bridge between anatomical structures in different taxa for cross-species inference. It uses novel methods for representing taxonomic variation, and has proved to be essential for translational phenotype analyses. Uberon is available at http://uberon.org

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

MetaPop: a pipeline for macro- and microdiversity analyses and visualization of microbial and viral metagenome-derived populations

Abstract Background Microbes and their viruses are hidden engines driving Earth’s ecosystems from the oceans and soils to humans and bioreactors. Though gene marker approaches can now be complemented by genome-resolved studies of inter-(macrodiversity) and intra-(microdiversity) population variation, analytical tools to do so remain scattered or under-developed. Results Here, we introduce MetaPop, an open-source bioinformatic pipeline that provides a single interface to analyze and visualize microbial and viral community metagenomes at both the macro - and microdiversity levels. Macrodiversity estimates include population abundances and α- and β-diversity. Microdiversity calculations include identification of single nucleotide polymorphisms, novel codon-constrained linkage of SNPs, nucleotide diversity ( π and θ ), and selective pressures (pN/pS and Tajima’s D ) within and fixation indices ( F ST ) between populations. MetaPop will also identify genes with distinct codon usage. Following rigorous validation, we applied MetaPop to the gut viromes of autistic children that underwent fecal microbiota transfers and their neurotypical peers. The macrodiversity results confirmed our prior findings for viral populations (microbial shotgun metagenomes were not available) that diversity did not significantly differ between autistic and neurotypical children. However, by also quantifying microdiversity, MetaPop revealed lower average viral nucleotide diversity ( π ) in autistic children. Analysis of the percentage of genomes detected under positive selection was also lower among autistic children, suggesting that higher viral π in neurotypical children may be beneficial because it allows populations to better “bet hedge” in changing environments. Further, comparisons of microdiversity pre- and post-FMT in autistic children revealed that the delivery FMT method (oral versus rectal) may influence viral activity and engraftment of microdiverse viral populations, with children who received their FMT rectally having higher microdiversity post-FMT. Overall, these results show that analyses at the macro level alone can miss important biological differences. Conclusions These findings suggest that standardized population and genetic variation analyses will be invaluable for maximizing biological inference, and MetaPop provides a convenient tool package to explore the dual impact of macro - and microdiversity across microbial communities.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Signatures of optimal codon usage in metabolic genes inform budding yeast ecology

Reverse ecology is the inference of ecological information from patterns of genomic variation. One rich, heretofore underutilized, source of ecologically relevant genomic information is codon optimality or adaptation. Bias toward codons that match the tRNA pool is robustly associated with high gene expression in diverse organisms, suggesting that codon optimization could be used in a reverse ecology framework to identify highly expressed, ecologically relevant genes. To test this hypothesis, we examined the relationship between optimal codon usage in the classic galactose metabolism ( GAL ) pathway and known ecological niches for 329 species of budding yeasts, a diverse subphylum of fungi. We find that optimal codon usage in the GAL pathway is positively correlated with quantitative growth on galactose, suggesting that GAL codon optimization reflects increased capacity to grow on galactose. Optimal codon usage in the GAL pathway is also positively correlated with human-associated ecological niches in yeasts of the CUG-Ser1 clade and with dairy-associated ecological niches in the family Saccharomycetaceae. For example, optimal codon usage of GAL genes is greater than 85% of all genes in the genome of the major human pathogen Candida albicans (CUG-Ser1 clade) and greater than 75% of genes in the genome of the dairy yeast Kluyveromyces lactis (family Saccharomycetaceae). We further find a correlation between optimization in the GAL actose pathway genes and several genes associated with nutrient sensing and metabolism. This work suggests that codon optimization harbors information about the metabolic ecology of microbial eukaryotes. This information may be particularly useful for studying fungal dark matter—species that have yet to be cultured in the lab or have only been identified by genomic material.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2017

Development and Experimental Benchmark of Simulations to Predict Used Nuclear Fuel Cladding Temperatures during Drying and Transfer Operations

Radial hydride formation in high-burnup used fuel cladding has the potential to radically reduce its ductility and suitability for long-term storage and eventual transport. To avoid this formation, the maximum post-reactor temperature must remain sufficiently low to limit the cladding hoop stress, and so that hydrogen from the existing circumferential hydrides will not dissolve and become available to re-precipitate into radial hydrides under the slow cooling conditions during drying, transfer and early dry-cask storage. The objective of this research is to develop and experimentallybenchmark computational fluid dynamics simulations of heat transfer in post-pool-storage drying operations, when high-burnup fuel cladding is likely to experience its highest temperature. These benchmarked tools can play a key role in evaluating dry cask storage systems for extended storage of high-burnup fuels and post-storage transportation, including fuel retrievability. The benchmarked tools will be used to aid the design of efficient drying processes, as well as estimate variations of surface temperatures as a means of inferring helium integrity inside the canister or cask. This work will be conducted effectively because the principal investigator has experience developing these types of simulations, and has constructed a test facility that can be used to benchmark them.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2017

How Do Stars Gain Their Mass? A JCMT/SCUBA-2 Transient Survey of Protostars in Nearby Star-forming Regions

Most protostars have luminosities that are fainter than expected from steady accretion over the protostellar lifetime. The solution to this problem may lie in episodic mass accretion—prolonged periods of very low accretion punctuated by short bursts of rapid accretion. However, the timescale and amplitude for variability at the protostellar phase is almost entirely unconstrained. In A James Clerk Maxwell Telescope/SCUBA-2 Transient Survey of Protostars in Nearby Star-forming Regions, we are monitoring monthly with SCUBA-2 the submillimeter emission in eight fields within nearby (<500 pc) star-forming regions to measure the accretion variability of protostars. The total survey area of ∼1.6 deg{sup 2} includes ∼105 peaks with peaks brighter than 0.5 Jy/beam (43 associated with embedded protostars or disks) and 237 peaks of 0.125–0.5 Jy/beam (50 with embedded protostars or disks). Each field has enough bright peaks for flux calibration relative to other peaks in the same field, which improves upon the nominal flux calibration uncertainties of submillimeter observations to reach a precision of ∼2%–3% rms, and also provides quantified confidence in any measured variability. The timescales and amplitudes of any submillimeter variation will then be converted into variations in accretion rate and subsequently used to infer the physical causes of the variability. This survey is the first dedicated survey for submillimeter variability and complements other transient surveys at optical and near-IR wavelengths, which are not sensitive to accretion variability of deeply embedded protostars.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2022

Kilonova Detectability with Wide-field Instruments

Abstract Kilonovae are ultraviolet, optical, and infrared transients powered by the radioactive decay of heavy elements following a neutron star merger. Joint observations of kilonovae and gravitational waves can offer key constraints on the source of Galactic r -process enrichment, among other astrophysical topics. However, robust constraints on heavy element production require rapid kilonova detection (within ∼1 day of merger) as well as multiwavelength observations across multiple epochs. In this study, we quantify the ability of 13 wide-field-of-view instruments to detect kilonovae, leveraging a large grid of over 900 radiative transfer simulations with 54 viewing angles per simulation. We consider both current and upcoming instruments, collectively spanning the full kilonova spectrum. The Roman Space Telescope has the highest redshift reach of any instrument in the study, observing kilonovae out to z ∼ 1 within the first day post-merger. We demonstrate that BlackGEM, DECam, GOTO, the Vera C. Rubin Observatory’s LSST, ULTRASAT, VISTA, and WINTER can observe some kilonovae out to z ∼ 0.1 (∼475 Mpc), while DDOTI, MeerLICHT, PRIME, Swift/UVOT, and ZTF are confined to more nearby observations. Furthermore, we provide a framework to infer kilonova ejecta properties following nondetections and explore variation in detectability with these ejecta parameters.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1971

Coronagraphic observations of an enhanced coronal region. I - Fe XIII and Ni XV emission line data.

Observation of nine coronal emission lines representing five stages of Fe ionization and one stage of Ni in an enhanced coronal region. The data from these observations are presented along with a density model of the enhanced region obtained from the Fe XIII and Ni XV emission line ratios as a function of position angle. The electron densities obtained from Fe XIII lines range from 10 to the 8th to 10 to the 9th per cu cm, and are slightly lower for Ni XV line data. Estimates of the variation of temperature over the enhanced region are inferred from the observed line intensities.

Fisher, R.↗

NASA NTRS1973

Helium abundance of the sun.

Critical review of the four methods that have been used to estimate the ratio of helium to hydrogen in the sun - the solar neutrino flux, spectral intensity of helium lines in prominences and the chromosphere, elemental abundance of solar cosmic rays, and variations of solar wind He/H. At present the measured value for the neutrino flux cannot be explained by any of the theoretical models of the sun, and thus the neutrino measurements cannot yield an estimate of He/H. Helium line intensity measurements give the most accurate values for He/H now available - i.e., 5 to 8% helium by number. However, these results refer to the chromosphere and prominences only, and questions of spatial and temporal variations of the observed quantities and of the inferred helium abundances have not yet been dealt with adequately.

Hirshberg, J.↗

NASA NTRS1983

Saturn's ionosphere: Inferred electron densities

During the two Voyager encounters with Saturn, radio bursts were detected which appear to have originated from atmospheric lightning storms. Although these bursts generally extended over frequencies from as low as 100 kHz to the upper detection limit of the instrument, 40 MHz, they often exhibited a sharp but variable low frequency cutoff below which bursts were not detected. We interpret the variable low-frequency extent of these bursts to be due to the reflection of the radio waves as they propagate through an ionosphere which varies with local time. We obtain estimates of electron densities at a variety of latitude and local time locations. These compare well with the dawn and dusk densitis measured by the Pioneer 11 Voyager Radio Science investigations, and with model predictions for dayside densities. However, we infer a two-order-of-magnitude diurnal variation of electron density, which had not been anticipated by theoretical models of Saturn's ionosphere, and an equally dramatic extinction of ionospheric electron density by Saturn's rings.

Kaiser, M. L.↗

NASA NTRS1983

Coupling of radiation into thin film modes by means of localized plasma resonances

The interaction between the surface plasmon mode that propagates at a metal dielectric interface and the localized plasma resonances (LPR) is investigated experimentally in Ag-island films. A stair-stepped sample geometry comprising a glass substrate, a continuous 50-nm Ag film, an LiF spacer film of thickness d = 5-60 nm, and an Ag-island film of mass thickness 3 nm is used in near-normal-reflectivity and plasmon-propagation-constant (k) determinations. The results are presented graphically and discussed. The overall shape of the reflectivity curves is found to be characteristic of Ag films, but with a dip at about 400 nm (corresponding to the absorption resonance of the island film) which is most pronounced with d = 25 nm. It is inferred that the island resonances are strongly coupled to a continuous-film dissipative mechanism at this d value. This inference is supported by the fact that the variation in k, correctd for LiF effects and plotted as a function of d, is greatest at around d = 25 nm. The implications of this finding for broad-band coupling into a thin-film mode, LPR enhancement of waveguide nonlinear effects, and new surface-enhanced-Raman-scattering geometries are indicated.

Holland, W. R.↗

NASA NTRS1984

Saturn's ionosphere - Inferred electron densities

During the two Voyager encounters with Saturn, radio bursts were detected which appear to have originated from atmospheric lightning storms. Although these bursts generally extended over frequencies from as low as 100 kHz to the upper detection limit of the instrument, 40 MHz, they often exhibited a sharp but variable low frequency cutoff below which bursts were not detected. We interpret the variable low-frequency extent of these bursts to be due to the reflection of the radio waves as they propagate through an ionosphere which varies with local time. We obtain estimates of electron densities at a variety of latitude and local time locations. These compare well with the dawn and dusk densities measured by the Pioneer 11 Voyager Radio Science investigations, and with model predictions for dayside densities. However, we infer a two-order-of-magnitude diurnal variation of electron density, which had not been anticipated by theoretical models of Saturn's ionosphere, and an equally dramatic extinction of ionospheric electron density by Saturn's rings. Previously announced in STAR as N84-17102

Kaiser, M. L.↗

NASA NTRS1985

Measurements of the vertical atmospheric electric field and of the electrical conductivity with stratospheric balloons

Measurements of the atmospheric (vertical) electric field with balloons in the stratosphere are reported. The atmospheric electrical conductivity is also measured and the current density inferred. The average vertical current shows the expected variation with universal time and is also seen to be influenced by external (magnetospheric) electric fields.

Iversen, I. B.↗

NASA NTRS1989

Shade images of forested areas obtained from LANDSAT MSS data

The pixel size in the present day Remote Sensing systems is large enough to include different types of land cover. Depending upon the target area, several components may be present within the pixel. In forested areas, generally, three main components are present: tree canopy, soil (understory), and shadow. The objective is to generate a shade (shadow) image of forested areas from multispectral measurements of LANDSAT MSS (Multispectral Scanner) data by implementing a linear mixing model, where shadow is considered as one of the primary components in a pixel. The shade images are related to the observed variation in forest structure, i.e., the proportion of inferred shadow in a pixel is related to different forest ages, forest types, and tree crown cover. The Constrained Least Squares (CLS) method is used to generate shade images for forest of eucalyptus and vegetation of cerrado using LANDSAT MSS imagery over Itapeva study area in Brazil. The resulted shade images may explain the difference on ages for forest of eucalyptus and the difference on three crown cover for vegetation of cerrado.

Shimabukuro, Yosio Edemir↗

NASA NTRS1989

Shade images of forested areas obtained from Landsat MSS data

The objective of this report is to generate a shade (shadow) image of forested areas from Landsat MSS data by implementing a linear mixing model, where shadow is considered as one of the primary components in a pixel. The shade images are related to the observed variation in forest structure; i.e., the proportion of inferred shadow in a pixel is related to different forest ages, forest types, and tree crown cover. The constrained least-squares method is used to generate shade images for forest of eucalyptus and vegetation of 'cerrado' over the Itapeva study area in Brazil. The resulted shade images may explain the difference on ages for forest of eucalyptus and the difference on tree crown cover for vegetation of cerrado.

Shimabukuro, Yosio Edemir↗

NASA NTRS1991

The least-squares mixing models to generate fraction images derived from remote sensing multispectral data

Constrained-least-squares and weighted-least-squares mixing models for generating fraction images derived from remote sensing multispectral data are presented. An experiment considering three components within the pixels-eucalyptus, soil (understory), and shade-was performed. The generated fraction images for shade (shade image) derived from these two methods were compared by considering the performance and computer time. The derived shade images are related to the observed variation in forest structure, i.e., the fraction of inferred shade in the pixel is related to different eucalyptus ages.

Shimabukuro, Yosio Edemir↗