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At least 325 records · Page 18

Identification of a Fusarium ear rot resistance gene in maize by QTL mapping and RNA sequencing

Fusarium ear rot (FER) caused by Fusarium verticillioides is a prevalent maize disease. To comprehensively characterize the genetic basis of the natural variation in FER resistance, a recombinant inbred line (RIL) population was used to map quantitative trait loci (QTL) for FER resistance. A total of 17 QTL were identified by linkage mapping in eight environments. These QTL were located on six chromosomes and explained 3.88–15.62% of the total phenotypic variation. Moreover, qFER1.03 had the strongest effect and accounted for 4.98–15.62% of the phenotypic variation according to analyses of multiple environments involving best linear unbiased predictions. The chromosome segment substitution lines (CSSLs) derived from a cross between Qi319 (donor parent) and Ye478 (recurrent parent) were used to verify the contribution of qFER1.03 to FER resistance. The line CL171, which harbored an introgressed qFER1.03 , was significantly resistant to FER. Further fine mapping of qFER1.03 revealed that the resistance QTL was linked to insertion/deletion markers InDel 8 and InDel 2, with physical distances of 43.55 Mb and 43.76 Mb, respectively. Additionally, qFER1.03 differed from the previous resistance QTL on chromosome 1. There were three annotated genes in this region. On the basis of the RNA-seq data, which revealed the genes differentially expressed between the FER-resistant Qi319 and susceptible Ye478, GRMZM2G017792 (MPK3) was preliminarily identified as a candidate gene in the qFER1.03 region. The Pr-CMV-VIGS system was used to decrease the GRMZM2G017792 expression level in CL171 by 34–57%, which led to a significant decrease in FER resistance. Using RIL and CSSL populations combined with RNA-seq and Pr-CMV-VIGS, the candidate gene can be dissected effectively, which provided important gene resource for breeding FER-resistant varieties.

Xia, Yusheng↗

Effect of an Adjustable Supersonic Inlet on the Performance up to Mach Number 2.0 of a J34 Turbojet Engine

A J34 turbojet engine was investigated at free-stream Mach numbers of 0.12 and 1.6 to 2.0 to determine the effect of supersonic inlet operation on engine performance. With the excepetion of ideal jet thrust, the use of generalized engine parameters correlated the engine data satisfactorily when the exit nozzle was choked. Large total-pressure distortations did not affect compressor efficiency. During inlet pulsing, the engine operated with compressor-inlet total-pressure variations as large as 18 percent of the local average and at frequnecies of 17 plus or minus 2 cycles per second. Total-pressure amplitudes propagated through the engine and caused ideal-gross-thrust changes up to 12 percent.

Beke, Andrew↗

Trends in total column ozone measurements

It is important to ensure the best available data are used in any determination of possible trends in total ozone in order to have the most accurate estimates of any trends and the associated uncertainties. Accordingly, the existing total ozone records were examined in considerable detail. Once the best data set has been produced, the statistical analysis must examine the data for any effects that might indicate changes in the behavior of global total ozone. The changes at any individual measuring station could be local in nature, and herein, particular attention was paid to the seasonal and latitudinal variations of total ozone, because two dimensional photochemical models indicate that any changes in total ozone would be most pronounced at high latitudes during the winter months. The conclusions derived from this detailed examination of available total ozone can be split into two categories, one concerning the quality and the other the statistical analysis of the total ozone record.

Rowland, F. S.↗

Global ozone - Solar activity relationship from satellite measurements

Global ozone variations are evaluated by analyzing satellite measurements, using the technique of integrating out dynamical effects causing large variations in total ozone at individual locations. Analysis of Nimbus 4 reprocessed BUV data was extended to cover the period from April 1970 through December 1975. Temporal and latitudinal variation of biases and yearly change in global biases between the satellite and ground based ozone measurements are indicated. The bias-corrected 6-month-running filtered global means are shown, and the correlation coefficient between ozone and the solar activity index remains high at 0.94. It is concluded that the results give a strong indication of an ozone-solar activity relationship that is caused by solar UV variability.

Keating, G. M.↗

Impact of Water Withdrawals from Groundwater and Surface Water on Continental Water Storage Variations

Humans have strongly impacted the global water cycle, not only water flows but also water storage. We have performed a first global-scale analysis of the impact of water withdrawals on water storage variations, using the global water resources and use model WaterGAP. This required estimation of fractions of total water withdrawals from groundwater, considering five water use sectors. According to our assessment, the source of 35% of the water withdrawn worldwide (4300 cubic km/yr during 1998-2002) is groundwater. Groundwater contributes 42%, 36% and 27% of water used for irrigation, households and manufacturing, respectively, while we assume that only surface water is used for livestock and for cooling of thermal power plants. Consumptive water use was 1400 cubic km/yr during 1998-2002. It is the sum of the net abstraction of 250 cubic km/yr of groundwater (taking into account evapotranspiration and return flows of withdrawn surface water and groundwater) and the net abstraction of 1150 km3/yr of surface water. Computed net abstractions indicate, for the first time at the global scale, where and when human water withdrawals decrease or increase groundwater or surface water storage. In regions with extensive surface water irrigation, such as Southern China, net abstractions from groundwater are negative, i.e. groundwater is recharged by irrigation. The opposite is true for areas dominated by groundwater irrigation, such as in the High Plains aquifer of the central USA, where net abstraction of surface water is negative because return flow of withdrawn groundwater recharges the surface water compartments. In intensively irrigated areas, the amplitude of seasonal total water storage variations is generally increased due to human water use; however, in some areas, it is decreased. For the High Plains aquifer and the whole Mississippi basin, modeled groundwater and total water storage variations were compared with estimates of groundwater storage variations based on groundwater table observations, and with estimates of total water storage variations from the GRACE satellites mission. Due to the difficulty in estimating area-averaged seasonal groundwater storage variations from point observations of groundwater levels, it is uncertain whether WaterGAP underestimates actual variations or not. We conclude that WaterGAP possibly overestimates water withdrawals in the High Plains aquifer where impact of human water use on water storage is readily discernible based on WaterGAP calculations and groundwater observations. No final conclusion can be drawn regarding the possibility of monitoring water withdrawals in the High Plains aquifer using GRACE. For the less intensively irrigated Mississippi basin, observed and modeled seasonal groundwater storage reveals a discernible impact of water withdrawals in the basin, but this is not the case for total water storage such that water withdrawals at the scale of the whole Mississippi basin cannot be monitored by GRACE.

Doell, Petra↗

Variation with interplanetary sector of the total magnetic field measured at the OGO 2, 4, and 6 satellites

Variations in the scalar magnetic field (delta B) from the polar orbiting OGO 2, 4, and 6 spacecraft are examined as a function of altitude for times when the interplanetary magnetic field is toward the sun and for times when the interplanetary magnetic field away from the sun. This morphology is basically the same as that found when all data, irrespective of interplanetary magnetic sector, are averaged together. Differences in delta B occur, both between sectors and between seasons, which are similar in nature to variations in the surface delta Z found by Langel (1973c). The altitude variation of delta B at sunlit local times, together with delta Z at the earth's surface, demonstrates that the delta Z and delta B which varies with sector has an ionospheric source. Langel (1973b) showed that the positive delta B region in the dark portion of the hemisphere is due to at least two sources, the westward electrojet and an unidentified non-ionospheric source(s). Comparison of magnetic variations between season/sector at the surface and at the satellite, in the dark portion of the hemisphere, indicates that these variations are caused by variations in the latitudinally narrow electrojet currents and not by variations in the non-ionospheric source of delta B.

Langel, R. A.↗

Canopy height and climate dryness parsimoniously explain spatial variation of unstressed stomatal conductance

The spatio-temporal variation of stomatal conductance directly regulates photosynthesis, water partitioning, and biosphere-atmosphere interactions. While many studies have focused on stomatal response to stresses, the spatial variation of unstressed stomatal conductance remains poorly determined, and is usually characterized in land surface models (LSMs) simply based on plant functional type (PFT). Here, we derived unstressed stomatal conductance at the ecosystem-scale using observations from 115 global FLUXNET sites. When aggregated by PFTs, the across-PFT pattern was highly consistent with the parameterizations of LSMs. However, PFTs alone captured only 17% of the variation in unstressed stomatal conductance across sites. Within the same PFT, unstressed stomatal conductance was negatively related to climate dryness and canopy height, which explained 45% of the total spatial variation. Our results highlight the importance of plant environment interactions in shaping stomatal traits. The trait-environment relationship established here provides an empirical approach for improved parameterizations of stomatal conductance in LSMs.

Yanlan Liu↗

On the variation of the Nimbus 7 total solar irradiance

For the interval December 1978 to April 1991, the value of the mean total solar irradiance, as measured by the Nimbus-7 Earth Radiation Budget Experiment channel 10C, was 1,372.02 Wm(exp -2), having a standard deviation of 0.65 Wm(exp -2), a coefficient of variation (mean divided by the standard deviation) of 0.047 percent, and a normal deviate z (a measure of the randomness of the data) of -8.019 (inferring a highly significant non-random variation in the solar irradiance measurements, presumably related to the action of the solar cycle). Comparison of the 12-month moving average (also called the 13-month running mean) of solar irradiance to those of the usual descriptors of the solar cycle (i.e., sunspot number, 10.7-cm solar radio flux, and total corrected sunspot area) suggests possibly significant temporal differences. For example, solar irradiance is found to have been greatest on or before mid 1979 (leading solar maximum for cycle 21), lowest in early 1987 (lagging solar minimum for cycle 22), and was rising again through late 1990 (thus, lagging solar maximum for cycle 22), having last reported values below those that were seen in 1979 (even though cycles 21 and 22 were of comparable strength). Presuming a genuine correlation between solar irradiance and the solar cycle (in particular, sunspot number) one infers that the correlation is weak (having a coefficient of correlation r less than 0.84) and that major excursions (both as 'excesses' and 'deficits') have occurred (about every 2 to 3 years, perhaps suggesting a pulsating Sun).

Wilson, Robert M.↗

Xenon component organization in 14301

Xe in 14301 is a superposition of in situ spallation and presumably also fission Xe, of trapped solar wind, and of trapped fission Xe and Xe-129 redistributed after origin elsewhere on the moon. Some and probably most of the trapped fission originates from Pu-244. All of the components of various origins are released independently in stepwise heating, indicating that they were acquired by different means and remain in different sites within the sample. This applies to the excess fission and to the excess Xe-129, which fail to correlate quantitatively with each other; they must thus have been trapped by different mechanisms or at different times. In spite of their independent behavior in stepwise heating, the various trapped components contribute in constant proportion to the total Xe contents of the various size fractions. This quantitative correlation between excess Xe and solar wind Xe indicates that the same circumstances control the acquisition of both. The variation of the ratio of excess to solar wind Xe among different breccias thus can be ascribed more confidently to compositional variation in total Xe available for trapping rather than to the details of the trapping process.

Bernatowicz, T. J.↗

Evaluation of genetic diversity, agronomic traits, and anthracnose resistance in the NPGS Sudan Sorghum Core collection

The United States Department of Agriculture (USDA) National Plant Germplasm System (NPGS) sorghum core collection contains 3011 accessions randomly selected from 77 countries. Genomic and phenotypic characterization of this core collection is necessary to encourage and facilitate its utilization in breeding programs and to improve conservation efforts. In this study, we examined the genome sequences of 318 accessions belonging to the NPGS Sudan sorghum core set, and characterized their agronomic traits and anthracnose resistance response. We identified 183,144 single nucleotide polymorphisms (SNPs) located within or in proximity of 25,124 annotated genes using the genotyping-by-sequencing (GBS) approach. The core collection was genetically highly diverse, with an average pairwise genetic distance of 0.76 among accessions. Population structure and cluster analysis revealed five ancestral populations within the Sudan core set, with moderate to high level of genetic differentiation. In total, 171 accessions (54%) were assigned to one of these populations, which covered 96% of the total genomic variation. Genome scan based on Tajima’s D values revealed two populations under balancing selection. Phenotypic analysis showed differences in agronomic traits among the populations, suggesting that these populations belong to different ecogeographical regions. A total of 55 accessions were resistant to anthracnose; these accessions could represent multiple resistance sources. Genome-wide association study based on fixed and random model Circulating Probability (farmCPU) identified genomic regions associated with plant height, flowering time, panicle length and diameter, and anthracnose resistance response. Integrated analysis of the Sudan core set and sorghum association panel indicated that a large portion of the genetic variation in the Sudan core set might be present in breeding programs but remains unexploited within some clusters of accessions. The NPGS Sudan core collection comprises genetically and phenotypically diverse germplasm with multiple anthracnose resistance sources. Population genomic analysis could be used to improve screening efforts and identify the most valuable germplasm for breeding programs. The new GBS data set generated in this study represents a novel genomic resource for plant breeders interested in mining the genetic diversity of the NPGS sorghum collection.

59 BASIC BIOLOGICAL SCIENCES↗

Solar Activity and its Impact on Earth's Climate

The Sun's activity is now approaching an expected 2006 minimum, following the dramatic maximum of Solar Cycle 23, that included events such as the 2001 "Bastille Day" Coronal Mass Ejection, and the record-setting Oct-Nov 2003 solar flares, with their associated sunspots and variations in Total Solar Irradiance, or TSI. On Nov 4,2003 the largest X-ray flare ever detected (X-28) was observed in detail. We discuss recent satellite measurements of TSI by ACRIM 2 and 3 and Virgo, and new precision observations of TSI and SSI (Solar Spectral Irradiance) from the SORCE mission, that launched on January 25,2003. TSI variations recorded during the June 8,2004 transit of Venus show the unprecedented precision of the SORCE Total Irradiance Monitor (TIM) instrument, the first of its kind to employ phase-sensitive detection. The SORCE spectral instruments, XPS, Solstice, and SIM, record the Sun's changes over a wide range of wavelengths, from 1 to more than 2000 nanometers, for the first time covering the peak of the solar spectrum, including spectral components that provide energy inputs to key components of the climate system - ultraviolet (UV) into the upper atmospheric ozone layer, infrared (IR) into the lower atmosphere and clouds, and Visible into the Oceans and biosphere. Succeeding satellite missions are planned to monitor both TSI and SSI through Cycle 24. We summarize current ideas about decadal and longer solar variability, and associated potential impacts on Earth's climate on time scales from decades to centuries, especially highlighting the role of feedbacks in the climate system.

Cahalan, Robert F.↗

Multiperiodicity in the Light Variations of the Beta Cephei Star Beta Crucis

High-resolution spectroscopic observations have led recently to the discovery that the P Cephei star Beta Crucis (Mimosa) is multiperiodic with at least three non-radial pulsation modes. Data obtained by the star tracker of the WIRE satellite have now allowed us to confirm this multiperiodicity in the light variations. A total of five million observations covering 17 days was analyzed and the three main periods we find in this work are in perfect agreement with the results derived from the line profile variations. The photometric amplitudes are small (3, 2.7 and 0.6 millimag for the dominant modes), but this is not surprising in view of the mode identifications derived earlier from the line profiles. Additional periods of low-amplitude modes (between 0.2-0.3 mmag) are also derived, including one suggested earlier by the radial velocity data.

Cuypers, J.↗

Multiperiodicity in the Light Variations of the Beta Cephei Star Beta Crucis

High-resolution spectroscopic observations have led recently to the discovery that the beta Cephei star beta Crucis (Mimosa) is multiperiodic with at least three non-radial pulsation modes. Data obtained by the star tracker of the WIRE satellite have now allowed us to confirm this multiperiodicity in the light variations. A total of 5 million observations covering 17 days was analyzed and the three main periods we find in this work are in perfect agreement with the results derived from the line profile variations. The photometric amplitudes are small (3, 2.7 and 0.6 millimag for the dominant modes), but this is not surprising in view of the mode identifications derived earlier from the line profiles. Additional periods of low-amplitude modes (between 0.2-0.3 mmag) are also derived, including one suggested earlier by the radial velocity data.

Cuypers, J.↗

Global Biomass Variation and its Geodynamic Effects, 1982-1998

Redistribution of mass near Earth's surface alters its rotation, gravity field, and geocenter location. Advanced techniques for measuring these geodetic variations now exist, but the ability to attribute the observed modes to individual Earth system processes has been hampered by a shortage of reliable global data on such processes, especially hydrospheric processes. To address one aspect of this deficiency, 17 yrs of monthly, global maps of vegetation biomass were produced by applying field-based relationships to satellite-derived vegetation type and leaf area index. The seasonal variability of biomass was estimated to be as large as 5 kg m(exp -2). Of this amount, approximately 4 kg m(exp -2) is due to vegetation water storage variations. The time series of maps was used to compute geodetic anomalies, which were then compared with existing geodetic observations as well as the estimated measurement sensitivity of the Gravity Recovery and Climate Experiment (GRACE). For gravity, the seasonal amplitude of biomass variations may be just within GRACE'S limits of detectability, but it is still an order of magnitude smaller than current observation uncertainty using the satellite-laser-ranging technique. The contribution of total biomass variations to seasonal polar motion amplitude is detectable in today's measurement, but it is obscured by contributions from various other sources, some of which are two orders of magnitude larger. The influence on the length of day is below current limits of detectability. Although the nonseasonal geodynamic signals show clear interannual variability, they are too small to be detected.

Rodell, M.↗

Simulation of the Universal-Time Diurnal Variation of the Global Electric Circuit Charging Rate

A global lightning model that includes diurnal and annual lightning variation, and total flash density versus latitude for each major land and ocean, has been used as the basis for simulating the global electric circuit charging rate. A particular objective has been to reconcile the difference in amplitude ratios [AR=(max-min)/mean] between global lightning diurnal variation (AR approx. = 0.8) and the diurnal variation of typical atmospheric potential gradient curves (AR approx. = 0.35). A constraint on the simulation is that the annual mean charging current should be about 1000 A. The global lightning model shows that negative ground flashes can contribute, at most, about 10-15% of the required current. For the purpose of the charging rate simulation, it was assumed that each ground flash contributes 5 C to the charging process. It was necessary to assume that all electrified clouds contribute to charging by means other than lightning, that the total flash rate can serve as an indirect indicator of the rate of charge transfer, and that oceanic electrified clouds contribute to charging even though they are relatively inefficient in producing lightning. It was also found necessary to add a diurnally invariant charging current component. By trial and error it was found that charging rate diurnal variation curves in Universal time (UT) could be produced with amplitude ratios and general shapes similar to those of the potential gradient diurnal variation curves measured over ocean and arctic regions during voyages of the Carnegie Institute research vessels.

Mackerras, D.↗

Simulation of the Universal-Time Diurnal Variation of the Global Electric Circuit Charging Rate

A global lightning model that includes diurnal and annual lightning variation, and total flash density versus latitude for each major land and ocean, has been used as the basis for simulating the global electric circuit charging rate. A particular objective has been to reconcile the difference in amplitude ratios [AR=(max-min)/mean] between global lightning diurnal variation (AR approximately equals 0.8) and the diurnal variation of typical atmospheric potential gradient curves (AR approximately equals 0.35). A constraint on the simulation is that the annual mean charging current should be about 1000 A. The global lightning model shows that negative ground flashes can contribute, at most, about 10-15% of the required current. For the purpose of the charging rate simulation, it was assumed that each ground flash contributes 5 C to the charging process. It was necessary to assume that all electrified clouds contribute to charging by means other than lightning, that the total flash rate can serve as an indirect indicator of the rate of charge transfer, and that oceanic electrified clouds contribute to charging even though they are relatively inefficient in producing lightning. It was also found necessary to add a diurnally invariant charging current component. By trial and error it was found that charging rate diurnal variation curves could be produced with amplitude ratios and general shapes similar to those of the potential gradient diurnal variation curves measured over ocean and arctic regions during voyages of the Carnegie Institute research vessels. The comparisons were made for the northern winter (Nov.-Feb.), the equinox (Mar., Apr., Sept., Oct.), the northern summer (May-Aug.), and the whole year.

Mackerras, David↗

Variations in Transport Derived from Satellite Altimeter Data over the Gulf Stream

Variations in total change of sea surface height (delta h) across the Gulf Stream are observed using Seasat radar altimeter data. The sea surface height is related to transport within the stream by a two layer model. Variations in delta h are compared with previously observed changes in transport found to increase with distance downstream. No such increase is apparent since the satellite transports show no significant dependence on distance. Though most discrepancies are less than 50 percent, a few cases differ by about 100 percent and more. Several possible reasons for these discrepancies are advanced, including geoid error, but only two oceanographic contributions to the variability are examined, namely, limitations in the two layer model and meanders in the current. It is concluded that some of the discrepancies could be explained as changes in the density structure not accounted for by the two layer model.

Molinelli, Eugene↗

On the relationship between the phases of 27-day total ozone and solar activity indices in different latitudinal zones

The dynamics of 27 day total ozone variations during and 11 year solar activity cycle at high and low latitudes was analyzed. The calculations were made using a specially worked out program permitting, besides the determination of the amplitudes and phases, the observation of the coherence of phases in any time interval. To characterize solar activity, solar radio-flux at 10.7 cm was used. The results of the calculation of total ozone phases difference and those of the index F(sub 10.7), as well as the amplitudes of the 27 day variations of these parameters are presented.

Ivanova, I. N.↗