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At least 325 records · Page 18
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

A Quantum Dot Nanobiosensor for Rapid Detection of Botulinum Neurotoxin Serotype E

Botulinum neurotoxins (BoNTs) are potent toxins produced by Clostridium bacteria that are responsible for the illness botulism and are listed as bioterrorism agents. BoNT serotype E (BoNT/E) is one of four BoNT serotypes that cause human botulism and is the second most frequent cause of foodborne botulism. Rapid detection and discrimination of BoNT serotypes implicated in human disease are critical for ensuring timely treatment of patients and identifying sources of toxins, but there have been few reported detection methods for BoNT/E and even fewer methods usable for BoNT serotyping. We report a nanobiosensor based on Forster resonance energy transfer (FRET) between semiconductor nanocrystals (quantum dots, QDs) and dark quencher-labeled peptide probes to detect biologically active BoNT/E in aqueous media. The peptide probes contain a specific cleavage site for active BoNT/E. QD photoluminescence, which changes intensity due to FRET when the peptide probe is cleaved, was used to indicate toxin presence and quantity. The detection of a BoNT/E light chain (LcE) and holotoxin was observed within 3 h. The limits of detection were 0.02 and 2 ng/mL for LcE and holotoxin, respectively. The nanobiosensor shows good specificity toward the target in tests with nontarget BoNT serotypes. The high sensitivity, simple operation, short detection time, and ability to be used in parallel with probes developed for other BoNT serotypes indicate that the nanobiosensor will be useful for rapid BoNT/E detection and serotype discrimination in food analysis.

botulinum neurotoxin E↗
DOE OSTI2020

Carrier-assisted One-pot Sample Preparation for Targeted Proteomics Analysis of Small Numbers of Human Cells

Protein analysis of small numbers of human cells is primarily achieved by targeted proteomics with antibody-based immunoassays, which have inherent limitations (e.g., low multiplex and unavailability of antibodies for new proteins). Mass spectrometry (MS)-based targeted proteomics has emerged as an alternative because it is antibody-free, high multiplex, and has high specificity and quantitation accuracy. Recent advances in MS instrumentation make MS-based targeted proteomics possible for multiplexed quantification of highly abundant proteins in single cells. However, there is a technical challenge for effective processing of single cells with minimal sample loss for MS analysis. To address this issue, we have recently developed a convenient protein carrier-assisted one-pot sample preparation coupled with liquid chromatography (LC) - selected reaction monitoring (SRM) termed cLC-SRM for targeted proteomics analysis of small numbers of human cells. This method capitalizes on using the combined excessive exogenous protein as a carrier and low-volume one-pot processing to greatly reduce surface adsorption losses as well as high-specificity LC-SRM to effectively address the increased dynamic concentration range due to the addition of exogeneous carrier protein. Its utility has been demonstrated by accurate quantification of most moderately abundant proteins in small numbers of cells (e.g., 10-100 cells) and highly abundant proteins in single cells. The easy-to-implement features and no need for specific devices make this method readily accessible to most proteomics laboratories. In this study, we have provided a detailed protocol for cLC-SRM analysis of small numbers of human cells including cell sorting, cell lysis and digestion, LC-SRM analysis, and data analysis. Further improvements in detection sensitivity and sample throughput are needed towards targeted single-cell proteomics analysis. We anticipate that cLC-SRM will be broadly applied to biomedical research and systems biology with the potential of facilitating precision medicine.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

Probing Axion-Like-Particles at the CERN Gamma Factory

We report the aim of the proposed CERN Gamma Factory is to produce ≈10 17 photons per second with energies up to 400 MeV. The photon beam intensity is expected to be a factor of $\mathcal{O}$(10 7 ) larger than that of the presently available photon beams in the MeV energy range. In this work, its potential to probe physics beyond the Standard Model is explored. In particular, searches for axion like particles (ALPs) with dominant couplings to photons are discussed and various production scenarios - fixed target, photon-photon collision, and conversion by a magnetic field - and detection schemes considered - via decay to photons or back-conversion. It is found that the Gamma Factory in a fixed target mode can probe ALPs with mass m a ≲ $\mathcal{O}$(100 MeV) and decay constants larger than 10 7 GeV, improving by an order of magnitude the discovery potential of previous beam dump experiments.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Model-based Cyber-attack Detection for Voltage Source Converters in Island Microgrids

With the upgrading of communication and control in microgrids, cyber threats on the power converters are increasing. Here, in this paper, a novel model-based cyber-attack detection methodology is proposed for each voltage source converter in microgrids. The Harmonics State Space Matrix (H-Matrix) is used to build the closed-loop transfer function, providing model-based estimation with the grid voltage and control reference. Then, the space phase model (SPM) is used to calculate residual to detect cyber-attacks in voltage source converter (VSC). As controller and converter parameters are included in the H-matrix, the proposed method also could detect cyber-attacks when voltage fluctuation occurs in the grid. To verify the feasibility of the proposed method, several attacks targeting VSC in an islanded microgrid are simulated in MATLAB. Simulation and detection results are introduced to demonstrate the resilience and feasibility of the proposed method.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2020

Structural basis for dimerization quality control

Most quality control pathways target misfolded proteins to prevent toxic aggregation and neurodegeneration 1 . Dimerization quality control further improves proteostasis by eliminating complexes of aberrant composition 2 , but how it detects incorrect subunits remains unknown. Here we provide structural insight into target selection by SCF-FBXL17, a dimerization-quality-control E3 ligase that ubiquitylates and helps to degrade inactive heterodimers of BTB proteins while sparing functional homodimers. We find that SCF-FBXL17 disrupts aberrant BTB dimers that fail to stabilize an intermolecular β-sheet around a highly divergent β-strand of the BTB domain. Furthermore, complex dissociation allows SCF-FBXL17 to wrap around a single BTB domain, resulting in robust ubiquitylation. SCF-FBXL17 therefore probes both shape and complementarity of BTB domains, a mechanism that is well suited to establish quality control of complex composition for recurrent interaction modules.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Chasing Gamma-Ray Signals from Binary Neutron Star Coalescences with the Cherenkov Telescope Array: Prospects and Observing Strategies

The detection of gravitational waves (GWs) from a binary neutron star (BNS) merger by Advanced LIGO and Advanced Virgo (GW170817), together with its electromagnetic counterpart, the short gamma-ray burst GRB 170817A, heralded the birth of multimessenger astronomy. The detection of TeV emission from GRBs motivates follow-up observations with the Cherenkov Telescope Array Observatory (CTAO), which is ideal for detecting such signals due to its unprecedented sensitivity, rapid response, and wide-field survey capabilities. The aim of this work is to evaluate GeV–TeV GW follow-up strategies for CTAO using a multistep simulation pipeline and to estimate the expected rate of joint GW–GRB detections during observing run O5. Using a simulated sample of BNS systems with corresponding GW detections, gamma-ray emission is simulated through phenomenological prescriptions based on the observed population of short GRBs, including off-axis jet scenarios. CTAO observations are simulated to account for instrument response, sky tiling strategies, integration times, and varying observing conditions. Strategies with variable and constant integration times are investigated. We find that, via an optimized follow-up strategy, about 5% of simulated GW-associated short GRBs produce GeV–TeV radiation detectable by CTAO. Detectability is strongly influenced by the jet opening angle and viewing angle, suggesting that even rough estimates of the viewing angle in GW alerts could enhance targeting. This framework motivates future follow-ups of GW-detectable events, including neutron star–black hole mergers, and further supports the development of advanced strategies incorporating galaxy distributions and synergies with future detectors such as the Einstein Telescope.

Abe, S. [University of Tokyo] (ORCID:0000000172503↗
DOE OSTI2022

Single-Atomic Site Catalyst Enhanced Lateral Flow Immunoassay for Point-of-Care Detection of Herbicide

Point-of-care (POC) detection of herbicides is of great importance due to their impact on the environment and potential risks to human health. Here, we design a single-atomic site catalyst (SASC) with excellent peroxidase-like (POD-like) catalytic activity, which enhances the detection performance of corresponding lateral flow immunoassay (LFIA). The iron single-atomic site catalyst (Fe-SASC) is synthesized from hemin-doped ZIF-8, creating active sites that mimic the Fe active center coordination environment of natural enzyme and their functions. Due to its atomically dispersed iron active sites that result in maximum utilization of active metal atoms, the Fe-SASC exhibits superior POD-like activity, which has great potential to replace its natural counterparts. Also, the catalytic mechanism of Fe-SASC is systematically investigated. Utilizing its outstanding catalytic activity, the Fe-SASC is used as label to construct LFIA (Fe-SASC-LFIA) for herbicide detection. The 2,4-dichlorophenoxyacetic acid (2,4-D) is selected as a target here, since it is a commonly used herbicide as well as a biomarker for herbicide exposure evaluation. A linear detection range of 1-250 ng/mL with a low limit of detection (LOD) of 0.82 ng/mL has been achieved. Meanwhile, excellent specificity and selectivity towards 2,4-D have been obtained. The outstanding detection performance of the Fe-SASC-LFIA has also been demonstrated in the detection of human urine samples, indicating the practicability of this POC detection platform for analyzing the 2,4-D exposure level of a person. We believe this proposed Fe-SASC-LFIA has potential as a portable, rapid, and high-sensitive POC detection strategy for pesticide exposure evaluation.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2025

Correcting beam space charge effects in Active-Target Time Projection Chamber

By providing a large gaseous volume for nuclear interactions while simultaneously recording the tracks of resulting reaction products, an active target serves as both a thick target and a detector. Once a reaction occurs, the emitted charged fragments strip electrons from the target gas along their path as they transverse the detector. Collection of these stripped electrons allow for detection of the product tracks. As beam intensity increases, the resulting ionization in the active target can significantly distort this collection of electrons. If left uncorrected, the resulting measurements could be wrong. In this paper, we investigate the impact of the space charge produced by heavy radioactive beams within the Active Target - Time Projection Chamber at Michigan State University. The beams are injected parallel to the electric field of the time projection chamber which is operated without a magnetic field for this experiment. Furthermore, we analyze the rate dependence of the space charge effects and demonstrate that they can be modeled and effectively corrected.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2024

Studies of e+e- Pair Photo-Production on Proton Target at 8 GeV in the GlueX Experiment

Lepton pair production has played an important role in both nuclear and particle physics, being among the earliest calculations utilizing QED, and seen most famously in the discovery of the J= at BNL. A technique is presented for measuring the linear polarization of GeV scale photon beams through the detection of e+e? pairs photo-produced in the target. This technique is applied to the analysis of GlueX data on proton target. Simulation predicts the analyzing power for pair production to be :5725 ? 0:0025 for the GlueX data, and the analysis of experimental data gives a linear polarization of approximately 35%, in good agreement with other measurements of beam polarization. The pair production technique is complementary to other electromagnetic and hadronic measurements of beam polarization, and is generally applicable in experiments that allow for forward angle electron and positron identi?fication and tracking. To facilitate this study, a neural net was trained for e=? separation to eliminate the pion background. Further, it is demonstrated that these e+e? pairs are sensitive to the proton charge form factor, which opens up the possibility for a new method to measure the proton RMS charge radius.

Schick, Andrew↗
DOE OSTI2023

Best-case scenarios for neutrino capture experiments

A direct discovery of the cosmic neutrino background would bring to a closure the searches for relic left-over radiation predicted by the Hot Big Bang cosmology. Recently, the KATRIN experiment put a limit on the local relic neutrino overdensity with respect to the cosmological predicted average value at η ≲ 10 11 [ Phys. Rev. Lett. 129 (2022) 011806]. In this work, we first examine to what extent such values of η are conceivable. We show that even under cavalier assumptions, a cosmic origin of η ≳ 10 4 seems out of reach (with the caveat of forming bound objects under a new force,) but find that a hypothetical local source of low-energy neutrinos could achieve η ~ 10 11 . Second, when such values are considered, we point out that the experimental signature in KATRIN and other neutrino-capture experiments changes, contrary to what has hitherto been assumed. Our results are model-independent and maximally accommodating as they only assume the Pauli exclusion principle. As intermittent physics target in the quest for C ν B detection, we identify an experimental sensitivity to η ~ 10 4 for which conceivable sources exist; to resolve the effect of a degenerate Fermi gas for such overdensity an energy resolution of 10 meV is required.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2026

Direct cross section measurement of 102 Pd ⁢(𝛾,𝑝) and 102 Pd ⁢(𝛾,𝛼) for the astrophysical 𝑝 process

Background: A handful of neutron-deficient stable nuclei, known as the “p nuclei,” cannot be produced through astrophysical neutron capture processes. Instead, some of these nuclei are proposed to be produced by 𝛾-induced reactions on existing r- and s-process seeds. The specific astrophysical site or sites are not yet identified, however, with uncertainties in the cross sections of these 𝛾-induced reactions playing a role. Databases of reaction rates for astrophysical simulations often rely on theoretical statistical model calculations, such as Hauser-Feshbach, for rates where no experimental information is known. However, reasonable variations in the choice of parametrizations of various nuclear properties can create order-of-magnitude variations in the final predicted cross sections and reaction rates, which are then propagated through the models to the predicted final abundances. Purpose: To better constrain these statistical model calculations and ultimately reduce the uncertainties from the nuclear physics on our understanding of the p nuclei, a measurement of the cross sections of 𝛾-induced reactions on the p-nucleus 102 Pd was undertaken. This work represents the first measurement of its kind, using segmented silicon detectors to measure prompt charged particle emission from 𝛾-induced reactions. Methods: Quasimonoenergetic gamma beams from the High Intensity 𝛾 Source facility bombarded an enriched 102 Pd target. A segmented silicon array was arranged to detect the particles emitted from (𝛾,𝑝) and (𝛾,𝛼) reactions. Results: Reaction cross sections were deduced at multiple 𝛾-beam energies between 10 and 19 MeV, and compared to statistical model calculations using talys-1.96. The 102 Pd ⁢(𝛾,𝑝)⁢ 101 Rh reaction cross section was reasonably well reproduced by a subset of photon strength functions and level densities, though the strength to the ground state of 101 Rh was underestimated at higher incident gamma energies. The 102 Pd ⁢(𝛾,𝛼)⁢ 98 Ru was in general overpredicted by the various alpha-nucleus optical model potentials. Conclusions: While the theoretical cross sections used to model the (𝛾,𝑝) reactions for the p process may be reasonable, a more careful approach is needed in the case of (𝛾,𝛼). Further work to probe gamma-induced reaction cross sections at and near the p nuclei is warranted.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

Proton branching ratios in 22 Mg for X-ray bursts

Here, decay protons from 22 Mg energy levels populated through a previously reported 24 Mg(p, t) 22 Mg transfer reaction (Chae et al. in Phys Rev C 79:055804, 2009) have been analyzed for proton branching ratios as a follow-up analysis. The measurement was performed at the Holifield Radioactive Ion Beam Facility of Oak Ridge National Laboratory by utilizing 41-MeV proton beams and 24 Mg solid targets. Decay protons and reaction tritons were simultaneously detected with a silicon detector array. By investigating the 24 Mg(p, t) 22 Mg*(p) 21 Na channels, the proton branching ratios of five 22 Mg excited states were obtained. The measured branching ratios provide constraints on the proton partial widths of the populated 22 Mg levels, which have implications for X-ray burst nucleosynthesis.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2026

ClusterWeave

ClusterWeave is a workflow for biosynthetic target discovery and prioritization. It assembles annotation, BGC detection, BiG-SCAPE family context, shortlist generation, and clinker-ready panel staging into one reproducible workflow.

Martin, StantonL↗
DOE OSTI2020

Dynamical Packing in the Habitable Zone: The Case of Beta CVn

Uncovering the occurrence rate of terrestrial planets within the habitable zone (HZ) of their host stars has been a particular focus of exoplanetary science in recent years. The statistics of these occurrence rates have largely been derived from transiting planet discoveries, and have uncovered numerous HZ planets in compact systems around M-dwarf host stars. Here we explore the width of the HZ as a function of spectral type, and the dynamical constraints on the number of stable orbits within the HZ for a given star. We show that, although the Hill radius for a given planetary mass increases with larger semimajor axis, the width of the HZ for earlier-type stars allows for more terrestrial planets in the HZ than late-type stars. In general, dynamical constraints allow ∼6 HZ Earth-mass planets for stellar masses ≳0.7M {sub ⊙}, depending on the presence of farther out giant planets. As an example, we consider the case of Beta CVn, a nearby bright solar-type star. We present 20 yr of radial velocities (RV) from the Keck/High Resolution Echelle Spectrometer (HIRES) and Automated Planet Finder (APF) instruments and conduct an injection-recovery analysis of planetary signatures in the data. Our analysis of these RV data rule out planets more massive than Saturn within 10 au of the star. These system properties are used to calculate the potential dynamical packing of terrestrial planets in the HZ and show that such nearby stellar targets could be particularly lucrative for HZ planet detection by direct imaging exoplanet missions.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

Multiple Explanations for the Single Transit of KIC 5951458 Based on Radial Velocity Measurements Extracted with a Novel Matched-template Technique

Planetary systems that show single-transit events are a critical pathway to increasing the yield of long-period exoplanets from transit surveys. From the primary Kepler mission, KIC 5951458 b (Kepler-456b) was thought to be a single-transit giant planet with an orbital period of 1310 days. However, radial velocity (RV) observations of KIC 5951458 from the HIRES instrument on the Keck telescope suggest that the system is far more complicated. To extract precise RVs for this V≈13 star, we develop a novel matched-template technique that takes advantage of a broad library of template spectra acquired with HIRES. We validate this technique and measure its noise floor to be 4–8 m s{sup −1} (in addition to internal RV error) for most stars that would be targeted for precision RVs. For KIC 5951458, we detect a long-term RV trend that suggests the existence of a stellar companion with an orbital period greater than a few thousand days. We also detect an additional signal in the RVs that is possibly caused by a planetary or brown dwarf companion with mass in the range of 0.6–82 M {sub Jup} and orbital period below a few thousand days. Curiously, from just the data on hand, it is not possible to determine which object caused the single “transit” event. We demonstrate how a modest set of RVs allows us to update the properties of this unusual system and predict the optimal timing for future observations.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Target Prioritization and Observing Strategies for the NEID Earth Twin Survey

NEID is a high-resolution optical spectrograph on the WIYN 3.5 m telescope at Kitt Peak National Observatory and will soon join the new generation of extreme precision radial velocity instruments in operation around the world. We plan to use the instrument to conduct the NEID Earth Twin Survey (NETS) over the course of the next 5 years, collecting hundreds of observations of some of the nearest and brightest stars in an effort to probe the regime of Earth-mass exoplanets. Even if we take advantage of the extreme instrumental precision conferred by NEID, it will be difficult to disentangle the weak (∼10 cm s{sup −1}) signals induced by such low-mass, long-period exoplanets from stellar noise for all but the quietest host stars. In this work, we present a set of quantitative selection metrics which we use to identify an initial NETS target list consisting of stars conducive to the detection of exoplanets in the regime of interest. We also outline a set of observing strategies with which we aim to mitigate uncertainty contributions from intrinsic stellar variability and other sources of noise.

47 OTHER INSTRUMENTATION↗
DOE OSTI2022

Targeting a proteolytic neoepitope on CUB domain containing protein 1 ( CDCP1 ) for RAS -driven cancers

Extracellular proteolysis is frequently dysregulated in disease and can generate proteoforms with unique neoepitopes not found in healthy tissue. Here, we demonstrate that Abs that selectively recognize a proteolytic neoepitope on CUB domain containing protein 1 (CDCP1) could enable more effective and safer treatments for solid tumors. CDCP1 is highly overexpressed in RAS-driven cancers, and its ectodomain is cleaved by extracellular proteases. Biochemical, biophysical, and structural characterization revealed that the 2 cleaved fragments of CDCP1 remain tightly associated with minimal proteolysis-induced conformational change. Using differential phage display, we generated recombinant Abs that are exquisitely selective to cleaved CDCP1 with no detectable binding to the uncleaved form. These Abs potently targeted cleaved CDCP1-expressing cancer cells as an Ab-drug conjugate, an Ab-radionuclide conjugate, and a bispecific T cell engager. In a syngeneic pancreatic tumor model, these cleaved-specific Abs showed tumor-specific localization and antitumor activity with superior safety profiles compared with a pan-CDCP1 approach. Targeting proteolytic neoepitopes could provide an orthogonal "AND" gate for improving the therapeutic index.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

A Systematic Search for MeV–GeV Pulsar Wind Nebulae without Gamma-Ray Detected Pulsars

An increasing number of pulsar wind nebulae (PWNe) are being identified in the TeV band by ground-based Imaging Air Cherenkov Telescopes such that they constitute the dominant source class of Galactic TeV emitters. However, MeV–GeV PWN counterparts are still largely lacking. To date, only a dozen PWNe are identified by the Fermi–Large Area Telescope (LAT) in the MeV–GeV band. Most PWNe are located along the Galactic plane embedded within the prominent, diffuse Galactic γ-ray emission, which makes these sources difficult to disentangle from the bright diffuse background. We present a systematic search for γ-ray counterparts to known PWNe in the 300 MeV–2 TeV energy band using the Fermi–LAT. We target the locations of previously identified PWNe that lack detected Fermi–LAT pulsars to minimize associated pulsar contamination. The sample includes six previously identified Fermi PWNe and eight Fermi–LAT sources associated with PWNe. We report the analysis of 58 regions of interest and classify Fermi–LAT detected sources as either a likely PWN or a candidate PWN counterpart based on their morphological and spectral characteristics across the broadband spectrum. There are nine unidentified Fermi–LAT sources that we consider as likely PWN counterparts, which, if confirmed to be PWNe, would greatly increase the PWN population detected by the Fermi–LAT from 12 to 21. The remaining Fermi–LAT detected sources are considered weaker PWN candidates. A second approach in the systematic search for γ-ray emitting PWNe will involve studying the off-pulse phases of Fermi–LAT detected pulsars for the presence of an obscured PWN and will be reported in a subsequent paper.

Acharyya, A. [Univ. of Southern Denmark, Odense (D↗