Characterisation of Mn/Ti layered double hydroxide for methylene blue degradation with Bayesian representation of electron transport
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This work presents a data-driven method for learning low-dimensional time-dependent physics-based surrogate models whose predictions are endowed with uncertainty estimates. We use the operator inference approach to model reduction that poses the problem of learning low-dimensional model terms as a regression of state space data and corresponding time derivatives by minimizing the residual of reduced system equations. Standard operator inference models perform well with accurate training data that are dense in time, but producing stable and accurate models when the state data are noisy and/or sparse in time remains a challenge. Another challenge is the lack of uncertainty estimation for the predictions from the operator inference models. Our approach addresses these challenges by incorporating Gaussian process surrogates into the operator inference framework to (1) probabilistically describe uncertainties in the state predictions and (2) procure analytical time derivative estimates with quantified uncertainties. The formulation leads to a generalized least-squares regression and, ultimately, reduced-order models that are described probabilistically with a closed-form expression for the posterior distribution of the operators. The resulting probabilistic surrogate model propagates uncertainties from the observed state data to reduced-order predictions. Furthermore, we demonstrate the method is effective for constructing low-dimensional models of two nonlinear partial differential equations representing a compressible flow and a nonlinear diffusion–reaction process, as well as for estimating the parameters of a low-dimensional system of nonlinear ordinary differential equations representing compartmental models in epidemiology.
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Direct normal irradiance (DNI) is often interpreted differently in ground measurements and forecasts using numerical weather prediction (NWP) models, leading to substantial bias in DNI forecasting especially under cloudy-sky conditions. To mitigate the bias, we use the Fast All-sky Radiation Model for Solar applications with DNI (FARMS-DNI) to conduct physics-based simulations of solar radiation in the circumsolar region. The DNI is quantified using the sum of the radiation along the sun direction and the scattered radiation within the circumsolar region. FARMS-DNI is coupled with the Weather Research and Forecasting model with solar extensions (WRF-Solar) to predict day-ahead DNI in 9-km pixels over an extended domain covering the contiguous United States. The DNI forecasts for the entire year of 2018 are validated using surface-based observations at the Atmospheric Radiation Measurement (ARM) and Surface Radiation Budget Network (SURFRAD) sites and a satellite-based solar radiation product developed by the procedure of the National Solar Radiation Data Base (NSRDB). The results show that the WRF-Solar coupled with the conventional Beer-Bouguer-Lambert law underestimes the overall DNI forecasts by 30%-60%, which is a joint effect of the uncertainties in computing the circumsolar radiation and forecasting cloud properties. This bias is significantly reduced by using FARMS-DNI.
Subglacial hydrology models struggle to reproduce seasonal drainage patterns that are consistent with observed subglacial water pressures and surface velocities. We modify the standard sheet-flow parameterization within a coupled sheet–channel subglacial drainage model to smoothly transition between laminar and turbulent flow based on the locally computed Reynolds number in a physically consistent way (the ‘transition’ model). We compare the transition model to standard laminar and turbulent models to assess the role of the sheet-flow parameterization in reconciling observed and modelled water pressures under idealized and realistic forcing. Relative to the turbulent model, the laminar and transition models improve seasonal simulations by increasing winter water pressure and producing a more prominent late-summer water pressure minimum. In contrast to the laminar model, the transition model remains consistent with its own internal assumptions across all flow regimes. Based on the internal consistency of the transition model and its improved performance relative to the standard turbulent model, we recommend its use for transient simulations of subglacial drainage.
Kinetic simulations of relativistic gases and plasmas are critical for understanding diverse astrophysical and terrestrial systems, but the accurate construction of the relativistic Maxwellian, the Maxwell–Jüttner distribution, on a discrete simulation grid is challenging. Difficulties arise from the finite velocity bounds of the domain, which may not capture the entire distribution function, as well as errors introduced by projecting the function onto a discrete grid. Here, we present a novel scheme for iteratively correcting the moments of the projected distribution applicable to all grid-based discretizations of the relativistic kinetic equation. In addition, we describe how to compute the needed nonlinear quantities, such as Lorentz boost factors, in a discontinuous Galerkin scheme through a combination of numerical quadrature and weak operations. The resulting method accurately captures the distribution function and ensures that the moments match the desired values to machine precision.
Recent work has highlighted that the strong correlation inherent in spin Hamiltonians can be effectively reduced by mapping spins to Fermions via the Jordan−Wigner transformation (JW). The Hartree−Fock method is straightforward in the Fermionic domain and may provide a reasonable approximation to the ground state. Correlation with respect to the Fermionic mean field can be recovered based on Lie-algebraic similarity transformation (LAST) with two-body correlators. Specifically, a unitary LAST variant eliminates the dependence on site ordering, while a nonunitary LAST yields size-extensive correlation energies. Whereas the first recent demonstration of such methods was restricted to small spin systems, we present efficient implementations using analytical gradients for the optimization with respect to the mean-field reference and the LAST parameters, thereby enabling the treatment of larger clusters, including systems with local spins s > $\frac{1}{2}$.
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In this study, we present a graph neural network-based learning approach using an autoencoder setup to derive low-dimensional variables from features observed in experimental crystal structures. These variables are then biased in enhanced sampling to observe state-to-state transitions and reliable thermodynamic weights. Our approach uses simple convolution and pooling methods. To verify the effectiveness of our protocol, we examined the nucleation of various allotropes and polymorphs of iron and glycine from their molten states. Our graph latent variables when biased in well-tempered metadynamics consistently show transitions between states and achieve accurate free energy calculations in agreement with experiments, both of which are indicators of dependable sampling. This underscores the strength and promise of our graph neural net variables for improved sampling. Furthermore, the protocol shown here should be applicable for other systems and with other sampling methods.
A key goal of molecular modeling is the accurate reproduction of the true quantum mechanical potential energy of arbitrary molecular ensembles with a tractable classical approximation. The challenges are that analytical expressions found in general purpose force fields struggle to faithfully represent the intermolecular quantum potential energy surface at close distances and in strong interaction regimes; that the more accurate neural network approximations do not capture crucial physics concepts, e.g., nonadditive inductive contributions and application of electric fields; and that the ultra-accurate narrowly targeted models have difficulty generalizing to the entire chemical space. We therefore designed a hybrid wide-coverage intermolecular interaction model consisting of an analytically polarizable force field combined with a short-range neural network correction for the total intermolecular interaction energy. Here, we describe the methodology and apply the model to accurately determine the properties of water, the free energy of solvation of neutral and charged molecules, and the binding free energy of ligands to proteins. The correction is subtyped for distinct chemical species to match the underlying force field, to segment and reduce the amount of quantum training data, and to increase accuracy and computational speed. For the systems considered, the hybrid ab initio parametrized Hamiltonian reproduces the two-body dimer quantum mechanics (QM) energies to within 0.03 kcal/mol and the nonadditive many-molecule contributions to within 2%. Simulations of molecular systems using this interaction model run at speeds of several nanoseconds per day.
Abstract Days of extreme precipitation over California are evaluated in Coupled Model Intercomparison Project Phase 6 (CMIP6) models and the ERA‐Interim reanalysis. In the current climate, the model spread in composited precipitation on extreme precipitation days is closely related to the magnitude of composited integrated vapor transport (IVT) across models, a proxy for the intensity of atmospheric rivers. Most models underestimate the magnitude of IVT associated with extreme precipitation, according to ERA‐Interim. This is due mostly to the contribution of moisture, which almost all models overestimate, while the contribution of lower‐tropospheric wind speed is generally closer to the reanalyses. Moreover, most models underestimate the variance in the latitude of maxima of numerous variables among days of extreme California precipitation. That is, in the general circulation models there is a lack of diversity in the latitude of the disturbances bringing winter precipitation to California. In the future climate, most models project a decrease in the frequency of southward‐displaced disturbances among California extreme precipitation days. Hence, the greatest increases in extreme precipitation are over northern California. However, the historical underestimate of the latitudinal variance of disturbances calls into question the reliability of these projections. This bias should be especially considered for dynamical downscaling efforts over the region.