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At least 325 records · Page 18

Hazard and risk analysis framework for nuclear power plant–based integrated energy systems

Employing integrated energy systems (IESs) with nuclear power plants (NPPs) can improve NPP utilization by leveraging dedicated thermal and electric power delivery, but it may also increase operational safety risks. This paper presents a framework to identify and quantify hazards and risks for such IESs. The framework combines accidentology to review past industrial accidents with failure modes and effects analysis (FMEA) to identify potential future incidents. Hydrogen explosion and toxic chemical release hazards are of particular concern. Explosion consequences are quantified using the Bauwens-Dorofeev (Bauwens) and trinitrotoluene equivalent mass (TNT-EM) methods, while chemical release consequences are computed using the Gaussian atmospheric dispersion method. Operational disturbances from direct electrical and thermal integration that may affect NPP safety are modeled using probabilistic risk analysis (PRA). Hazards and risks are then evaluated for regulatory compliance. The framework is applied to IESs comprising pressurized or boiling water reactors supplying three levels of thermal and electrical power to industrial customers. Case studies include high-temperature steam electrolysis hydrogen plants of varying capacities and a synthetic fuel production plant. Sensitivity analysis examines piping component failures in the PRA model as a precursor to cost estimation for thermal extraction line design. Additionally, Fussel-Vessely (FV) and risk increase importance (RII) measures identify risk-informed design improvements for the thermal extraction system. FMEA highlights hazards such as loss of offsite power, prompt loss of electrical load, loss of thermal output, and immediate steam diversion, in addition to hydrogen explosions and toxic chemical releases. Both Bauwens and TNT-EM methods suggest maintaining several hundred meters of separation between the NPP and hydrogen facility to mitigate explosion risks. PRA results show a maximum initiating event frequency increase of 1.15% and an overall risk increase of 0.28%. Importance measure analysis identifies upstream pipe leak isolation components as critical. Evaluating the results against safety regulations, it is concluded that hazards and risks can be managed to comply with regulations through risk-informed thermal and electrical connection designs, component selection, maintenance programs, and safe separation distances between NPPs and integrated industrial facilities.

08 - HYDROGEN↗

Analyses of Dose Rates for Second Inner Reflector Plug Replacement at Spallation Neutron Source

The Inner Reflector Plug (IRP) is a central component of the Spallation Neutron Source (SNS) target monolith, which houses the liquid mercury target and four liter-sized neutron moderator units. It is exposed to high-level radiation fields during routine operation and builds up significant activity. The IRP needs to be replaced due to moderator neutron poison and decoupler burn-out, which is used for shaping neutron pulses. The first IRP exchange took place in March 2018 and next one, which is IRP2, is planned to be replaced during the facility maintenance period in the end of December 2025, beginning of January 2026 calendar year. The replacement of IRP is a complex task due to its location in the area receiving high irradiation, being under significant amount of shielding, and size, which requires removal in segments. For planning the replacement workflow to help to reduce radiation exposure to workers dose rates for each stage of extraction/replacement operation are predicted.

42 ENGINEERING↗

BioSTEAMDevelopmentGroup/thermosteam

BioSTEAM is a fast and flexible package for the design, simulation, and techno-economic analysis of biorefineries under uncertainty. BioSTEAM’s framework is built to streamline and automate early-stage technology evaluations and to enable rigorous sensitivity and uncertainty analyses. Complete biorefinery configurations are available at the Bioindustrial-Park GitHub repository, BioSTEAM’s premier repository for biorefinery models and results. The long-term growth and maintenance of BioSTEAM is supported through both community-led development and the research institutions invested in BioSTEAM. Through the open-source and community-lead platform, BioSTEAM aims to foster communication and transparency within the biorefinery research community for an integrated effort to expedite the evaluation of candidate biofuels and bioproducts. Additionally, an agile life cycle assessment (LCA) platform has been designed to interface with BioSTEAM, BioSTEAM-LCA. This open-source, installable package allows users to perform streamlined LCAs of biorefineries. The focus of BioSTEAM-LCA is to streamline and automate early-stage environmental impact analyses of processes and technologies, and to enable rigorous sensitivity and uncertainty analyses linking process design, performance, economics, and environmental impacts. ThermoSTEAM is a standalone thermodynamic engine capable of estimating mixture properties, solving thermodynamic phase equilibria, and modeling stoichiometric reactions. ThermoSTEAM builds upon chemicals, the chemical properties component of the Chemical Engineering Design Library, with a robust and flexible framework that facilitates the creation of property packages. The Biorefinery Simulation and Techno-Economic Analysis Modules (BioSTEAM) is dependent on ThermoSTEAM for the simulation of unit operations.

Cortes-Peña, Yoel↗

Novel Quantum Dot Technology Shows Promise in Simplifying Vehicle and Structural Surface Inspections

A team of researchers from both the Air Force Institute and Technology and Los Alamos National Laboratory are developing a paint that contains a material called quantum dots which can optically measure deformation of a surface. Quantum dots are the same materials used in new QLED television displays; however, they can also be used for a multitude of sensing applications such as deformation. The researchers used a new method of applying an interfacial layer between the quantum dot paint and the surface under investigation to help adhesion in harsh environments. The primary motivation behind this research is to make both quality assurance and maintenance of aircraft easier for the warfighter. The researchers’ efforts started in 2019 and are continuing. The technology works by shining a light onto the surface of the paint and the dots will emit back a wavelength of light that relates to the amount of deformation the surface is going through. This has the promise to allow for real-time 2D surface measurements that is more affordable than other 2D surface measurement alternatives.

42 ENGINEERING↗

Optimizing Facility Operations by Applying Machine Learning to the Army Reserve Enterprise Building Control System (Final Report)

Thousands of U.S. Department of Defense (DoD) buildings have building automation systems (BASs) and/or advanced meters. Although these systems have a wealth of data, performance optimization requires time and expertise to review and act on that information. Machine learning (ML) can provide automated and actionable insights to controls operators. This demonstration implemented proven ML methods on the Army Reserve Enterprise Building Control System. ML refers to algorithms that “learn” from data and improve their performance on a given task over time. In the buildings domain these tasks range from predicting future energy consumption, to identifying operational issues before faults occur, to optimizing control decisions. To learn, ML requires input data, which – for buildings – typically consists of instrument data such as energy consumption data and subsystem controls information such as set-point temperatures, and context data consisting of information such as the physical location of the building, the area of the building, and the weather. ML models use the relationships learned from the input data to make predictions with new, previously unseen, data. The team was able to investigate and successfully implement the following ML use cases: labeling consumption data as anomalous or non-anomalous; baseline whole-building load prediction (unknown fault status); fault detection (validation not possible); and site prioritization for energy-related projects. Due to the constraints of the project, interventions were not able to be implemented during the demonstration; therefore, assessments of operational cost savings and maintenance avoided could not be performed. The project has been presented at two leading national building conferences and two additional publications to peer-reviewed journals are currently in preparation.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Machine Tool Data Analytics for Digital Twin and Machine Predictive Maintenance

The primary objective of this project is to improve machining process performance using in-process machining data from the machine tool controller and external sensors. Advances in the Industrial Internet of Things (IIoT) enable monitoring of machines using controller data. Examples of the data provided by a controller include execution status of the controller, part count, block of code being executed, door status, tool position, the spindle and axis load, etc. MTConnect and OPC-UA are the two common protocols for capturing machine information. In this collaboration, methods for retrieving the machine controller data from selected machine tool controls and making these data accessible in different subsystems (such as digital twins and machine maintenance portals, etc.) will be developed and tested. In addition, analytics to improve machining process performance (by increasing productivity and reducing downtime) will be developed.

42 ENGINEERING↗

Failure analysis of a cooling pump using modal and vibration analysis

Four pumps redundantly supply cooling water to a system. All four pumps underwent maintenance during a recently scheduled downtime. During preliminary evaluation following maintenance, one pump, the subject of this document, exhibited higher vibration levels compared to the other three pumps. The pump underwent further performance testing to rule out potential damage resulting from the higher vibration. Vibration analysis and modal analysis including steady state spectrum, operational deflection shape, run up transients, and modal impact have been utilized to identify dynamic characteristics that could contribute to the increased vibration levels. This article will cover the testing setup, methodology, analysis results, and recommendations.

42 ENGINEERING↗

Uranium Mill Tailings Radiation Control Act Title II DOE Due Diligence and Lessons Learned from a Previous Site Transfer - 20352

Title II of the Uranium Mill Tailings Radiation Control Act (UMTRCA) established that a government agency will provide perpetual care for closed uranium and thorium ore-processing sites that were operating under an NRC source material license in 1978 or were licensed thereafter. Commercial owners (licensees) operating under an NRC or agreement state specific license when UMTRCA was passed are responsible for conducting reclamation of any byproduct material remaining from uranium-ore processing operations in accordance with an NRC or agreement state approved reclamation plan. Reclamation includes both surface and groundwater remedies. Upon completion of reclamation and approval by NRC, the site is required to be transferred to either the host state or the DOE for long-term surveillance and maintenance. Since UMTRCA's enactment, six Title II sites have been transferred to DOE; an additional 24 Title II sites are anticipated to be transferred before 2050. DoE's role mandated under UMTRCA Title II as the long-term care custodian is to perform 'monitoring, maintenance, and emergency measures necessary to protect the public health and safety.' UMTRCA requires that the licensee pay a long-term surveillance charge 'sufficient to cover the annual costs of site surveillance.' However, at some sites such as the Bluewater, New Mexico, Disposal Site, this mandate has required additional effort and expense by DOE, beyond the originally anticipated and intended scope within UMTRCA, but within the authority of DOE under UMTRCA. In 1997, the Bluewater site became the second UMTRCA Title II site to be transferred to DOE. The site was the location of a uranium mill operated from 1953 until 1982. The specific licensee began site reclamation in 1991, and by 1995 all tailings and contaminated materials were encapsulated in two tailings disposal cells and other disposal areas. In addition to surface contamination, milling activities impacted groundwater in the two upper aquifers. In 1989, the specific licensee attempted active groundwater remediation; however, no significant reduction in contaminant concentrations was observed. As a result, the specific licensee applied to NRC for alternate concentration limits (ACLs) in 1990, which were approved in 1996 as being protective, after additional corrective actions were performed. Since transfer of the Bluewater site to DOE, unforeseen challenges have occurred, requiring additional actions. The first challenge is the occurrence of surface depressions located on the northern section of the main tailings disposal cell. The depressions were first observed during DoE's initial inspection in 1998; however, evidence of these can be observed on satellite images taken prior to transfer. Since being first observed, the depressions have continued to grow both in depth and areal extent. Due to the design of the main tailings disposal cell, the depressions impede storm water from being effectively shed off the 101- hectare (250-acre) top slope of the main tailings disposal cell. Instead, storm water accumulates in the depressions, forming a large ephemeral pond that has stored up to 16.3 x 10{sup 6} liters (4.3 million gallons) of stormwater. The ponding poses a potential risk to the integrity of the main tailings disposal cell in the case of a large storm event, with the potential to cause the pond to overtop and erode the cover material and underlying waste. DOE has taken a number of short-term actions to monitor, measure, and reduce the ponding and is currently working with the US Army Corps of Engineers to design and construct a repair. Additional challenges are associated with groundwater at the Bluewater site. Nine wells were present on the 1335-hectare (3300-acre) site upon transfer. Groundwater compliance was called into question after the State of New Mexico reduced its uranium groundwater standard from 5.0 to 0.03 milligrams per liter in 2004, and when an ACL for uranium was exceeded in a site monitoring well in 2010. Acquiring historical groundwater data and subsequent evaluations as well as additional DOE groundwater monitoring led to installing 10 new monitoring wells and performing additional site hydrogeology recharacterization. DOE continues to evaluate groundwater conditions at the site and works with the NRC to determine regulatory requirements and a path forward. As a result of lessons learned at the Bluewater site and other Title II sites, improved processes have been implemented at a programmatic level to increase due diligence before site transfer and prevent similar issues from occurring at other UMTRCA Title II sites under long-term management. DoE's due diligence process is documented in the Process for Transition of UMTRCA Title II Disposal Sites to DOE for Long-Term Surveillance and Maintenance and is designed to ensure that DOE has no technical or compliance concerns with regulatory decisions that might compromise protectiveness following site transfer to DOE. Implementation of the due diligence process has increased DoE's role prior to site transfer and has been effective in identifying potential issues. Actions by NRC and specific licensees, in response to enhanced due diligence efforts by DOE, are expected to minimize, if not totally prevent, the need for unanticipated actions by DOE pertaining to the surface and groundwater remedies after site transfer. (authors)

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Target Diagnostic Menu Lawrence Livermore National Laboratory SYSM-5620: Design Thinking and Systems Engineering

Target Diagnostic’s Engineering Science (TDES) currently supports over 80 diagnostic systems, all of which draw from a fixed budget that covers staff time and procurement. As the division continues to add new diagnostics, demand on these limited resources increases, yet the budget remains unchanged. Shot Responsible Individuals (RIs) have unrestricted freedom to select any number or type of diagnostics for each experiment, often by copying previous shot configurations with only minor modifications. This practice makes it easy to generate new shots but does not encourage critical evaluation of diagnostic necessity. As a result, many diagnostics are routinely included in a shot without a clear justification, and in practice, much of the data collected is not analyzed. The ever-growing arsenal of diagnostics also increases the burden on TDES personnel, requiring more staff for support, maintenance, and service. This environment creates challenges in focusing resources on diagnostics that provide the greatest value to the NIF mission and raises concerns about the continued justification for maintaining all existing systems. The static TDES budget cannot sustain the ongoing growth in demand for new diagnostic systems. Shot RIs currently face no constraints on the number or type of diagnostics they assign to each experiment, often defaulting to previous configurations without critically assessing the necessity of each diagnostic. This results in the routine inclusion of diagnostics whose data may not be analyzed or may no longer directly support the NIF mission. Consequently, TDES is required to maintain and support an expanding set of diagnostics, straining limited resources and risking inefficient use of staff and funding. There is a need for TDES to efficiently allocate limited resources by establishing a process that requires shot RIs to critically evaluate and justify the inclusion of each diagnostic in their experiments. This process should discourage the routine, unexamined inclusion of diagnostics, support the identification of underutilized or obsolete systems, and ensure that only those diagnostics providing the greatest value to the NIF mission are maintained and supported. Ultimately, this approach must enable TDES to operate within budget constraints while maximizing scientific impact and operational efficiency.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Specification of EBR-II Laser Profilometry Data

All laser profilometry data stored in FIPD were originally measured using the element laser profilometer system in HFEF/N. The irradiated fuel elements or pins were scanned by a laser beam to measure the outer diameter with position mapping of the spacer wire. The normal operation and data collection were performed automatically with HFEF/N Data Acquisition and Process Control System (DAPCS). With the digital control system, measured laser profilometry data were recorded in digital form on magnetic tapes, different from the analog contact profilometry data recorded by strip-chart record sheets. Two documents contained most of the important details about laser profilometry measurements. The first one is the operational manual of the laser profilometer (title: Element laser profilometer (ELP) operation and maintenance manual, HFEF/N OMM 4329, DOC. NO. W0171-0149-ES-01). This manual provides: (1) description of laser profilometer including the functions of each component (transceiver, retroreflector, clamping guide, shielding enclosure, electronic controller, etc.); (2) step-by-step guidance for calibrations, operations and measurements; and (3) maintenance procedures and other details of the element laser profilometer. Since first issued on 12/1/1986, several revisions/changes of the manual were developed to update the measurement accuracies and other factors for the laser profilometer system. The second document is a publicly accessible conference article titled “the element laser profilometer system in HFEF/N.” This article summarizes important functions and parameters of the laser profilometer. The range of measurements and the uncertainties reported in the article were consistent with the values reported in the operational manual.

42 ENGINEERING↗

System Health and Status Reporting is Used to Improve Infrastructure Systems at the Hanford Site - 20449

Reliable physical infrastructure systems are vital to completing the clean-up mission and the start-up and commissioning of new nuclear waste processing facilities at the Hanford Site. Key infrastructure systems at Hanford include water, sewer, and electrical utilities, roads, telecommunications/network systems, and fire systems. All of the infrastructure systems are non-nuclear, General Service systems that are being maintained under formal engineering configuration control and none are specifically credited in any documented safety analysis (DSA). Starting in calendar year 2017, the Hanford Site's infrastructure and services contractor started producing system health and status reports for a total of 15 critical infrastructure systems as means to get a better understanding of each system's health and how it could be improved to ensure better and more reliable service delivery. As the reporting, tracking, and use of the metrics has matured, the number of systems for which reports are being developed has been expanded to a total of 23. Each of the critical infrastructure systems are assigned primary and alternate design authorities that complete qualifications on each assigned system. The design authorities actively manage and maintain configuration control on each of their systems and track metrics associated with availability, maintenance (corrective and preventive), and configuration of the technical baseline. The metrics are based on the principles established in Chapter V of DOE O 420.1C, Facility Safety, [1] and have been tailored as appropriate to each of the key infrastructure systems. An overall assessment of system health is performed and documented on a routine basis (e.g., quarterly). Included in this documentation is a quantitative score for each of the metrics (i.e., availability, maintenance, configuration management) along with results of system walk-downs, description of any permanent design modifications, identification of new or emerging issues and vulnerabilities affecting the system, and an assessment by the design authority of actions necessary to improve the system health score. The overall status scores are calculated using a formula and based on a pre-determined grading scale, a color is assigned for simple presentation. The information gained from developing the reports is being used to (1) assist with making timely and better informed decisions through the use of solid technical bases that are increasing the overall reliability and capabilities of the Site's infrastructure systems as new expense and capital projects in the Reliability Projects Investment Portfolio (RPIP) are prioritized and executed; (2) feed the risk management program, and (3) integrate the technical content of Master Plans that describe the Site's needs for the system and the system's capabilities to meet those future needs. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Healable Coatings as a Mechanism to Repair Leading Edge Erosion in Wind Energy

Wind turbine blades are highly engineered structures designed to face temperature extremes and high winds. However, erosion of the blade's leading edge and subsequent repair remains a significant and costly challenge for the wind energy industry. Repair of these leading edges can lead to large amounts of downtime for the turbine and significant operational inefficiencies. In this work, the strength of adhesion and healing ability of a commercially available vitrimer (Mallinda's VITRIMAX) was compared to that of a thermoplastic resin, which has previously been demonstrated in wind energy applications (Arkema's Elium) to evaluate their efficacy as surface coatings for wind turbine blades, particularly their leading edges. Vitrimers are a class of inherently reprocessable thermosets, and it was theorized that vitrimer-based leading edge coatings could enable more robust and efficient wind turbine blades with decreased operational downtime and safer maintenance practices. It was found that the VITRIMAX adhered better to the wind blades' surfaces than both the manufacturer's paint and Elium, with increases in pull-off strength of adhesion ranging from 24% to 83% above that of the original paint. Furthermore, the VITRIMAX adhered strongly to the underlying composite of each blade with strength of adhesion values increasing in ranges from 42% to 97% above that of the original paint. Finally, the vitrimer coating showed an 88% decrease in surface roughness compared to end-of-life blade materials, and initial healing demonstrations in which coatings were manually scratched and subsequently healed exhibited an ~84.5% decrease in scratch depths.

Hubbard, Amber [ORNL]↗

Pavement condition and climatic data in southeast Texas: A dataset for evaluating flood impacts on pavement performance

Effective pavement maintenance is essential for economic stability, optimal network performance, and roadway safety. Achieving this requires thorough evaluation of pavement conditions, including structural integrity, surface roughness, and distress characteristics. Pavement performance indicators play a critical role in influencing vehicle safety and ride quality. Recent advances have emphasized the use of data-driven modeling to anticipate pavement behavior, with the goal of optimizing resource allocation and refining Maintenance and Rehabilitation (M&R) strategies through accurate condition assessment. A foundational requirement for these modeling efforts is the availability of standardized, high-quality datasets that can support robust and reproducible infrastructure analysis. This data article presents a comprehensive dataset assembled to facilitate pavement performance prediction, with a geographic focus on Southeast Texas, particularly the flood-vulnerable area of Beaumont. The dataset encompasses pavement and traffic attributes, meteorological records, flood simulation outputs, ground deformation measurements, and topographic indices, enabling detailed examination of both load-associated and non-load-associated degradation mechanisms. Data preprocessing was performed using ArcGIS Pro, Microsoft Excel, and Python to ensure consistency and usability in data-driven modeling applications, including machine learning workflows. Key contributions of this dataset include its utility in analyzing the climatic and environmental factors affecting pavement conditions, identifying critical predictive features, and enabling in-depth correlation analysis across diverse variables. By filling existing gaps in input variable selection resources, this dataset supports the development of predictive tools for estimating future maintenance demand and enhancing the resilience of pavement networks in flood-impacted areas. The resource highlights the importance of standardized datasets for advancing pavement management practices and provides a robust foundation for ongoing infrastructure performance modeling.

42 ENGINEERING↗

FY2021 Status Report on the Computing Systems for the Yucca Mountain Project TSPA-LA Models and Testing of Selected Process Models

Sandia National Laboratories continued evaluation of the total system performance assessment (TSPA) for License Application (LA) computing systems for the previously considered Yucca Mountain Project (YMP). This was done to maintain the operational readiness of the computing infrastructure (computer hardware and software) and knowledge capability for total system performance assessment) type analysis, as directed by the National Nuclear Security Administration (NNSA), DOE 2010. The FY21 task included continued operation of the cluster; maintenance of the TSPA-LA models (with GoldSim 9.60.300); continued assessment of the status of the Infiltration Model; (a process model that feeds the TSP -LA) and preliminary assessments of the Unsaturated Zone Flow Model and the Saturated Zone Flow and Transport Model Abstraction (process models that feed the TSPA-LA). The 2014 cluster and supporting software systems are currently fully operational to support TSPA-LA type analyses.

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The MOOSE fluid properties module

The Fluid Properties module within the Multiphysics Object-Oriented Simulation Environment (MOOSE) is used to compute fluid properties for numerous applications, ranging from nuclear reactor thermal hydraulics to geothermal energy. Those applications drove the development of the module to enable numerous different fluid equations of states, property lookups with primitive and conserved flow variable to cater to pressure and density-driven solvers, and an object-oriented design facilitating expansion and maintenance. Each fluid property is implemented in its own class but inherits capabilities such as automatic differentiation, automated out-of-bounds handling or variable conversion capabilities. Here, this paper presents the module, its design, its user and developer interface, its content in terms of fluids and properties, and several of its applications showing its major role in the MOOSE simulation ecosystem.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Initial testing of wave energy powered UV-C LED anti-biofouling system (CRADA 523)

3newable is requesting technical assistance for laboratory testing at the Marine and Coastal Research (MCRL) Laboratory of a UV-C LED anti-biofouling system. Ocean observing sensors provide critical data sources from deployed buoys and other platforms at sea. However, in addition to the availability of reliable power sources, biofouling of sensors and instruments is a limiting factor for operation and maintenance of deployed instruments. In collaboration with the Woods Hole Oceanographic Institute Ocean Observatories Initiative, 3newable has developed a novel solution to overcome these challenges and extend the deployment period of buoy-mounted sensors. The 3newable system co-locates wave energy converters to supply UV-C LED anti-biofouling units on powered buoy arrays. MCRL staff will implement an experiment to evaluate the efficacy of 3newable’s device under test for inhibiting growth of organisms on test coupons in a flow through seawater tank.

42 ENGINEERING↗

U.S. Efforts in Support of Examinations at Fukushima Daiichi - September 2024 Meeting Notes

Information obtained from Fukushima Daiichi Nuclear Power Station (Daiichi) is required to inform future Decontamination and Decommissioning (D&D) activities, improving the ability of the Tokyo Electric Power Company Holdings, Incorporated (TEPCO Holdings) to characterize potential hazards and to ensure the safety of workers involved with cleanup activities. This information also has important implications for the safety and operation of U.S. Commercial nuclear power plants. A collaborative U.S. and Japanese effort was initiated in 2014 by the Department of Energy Office of Nuclear Energy to identify Daiichi examination needs and evaluate recent Daiichi examination data to address these needs. This document summarizes information presented at and findings, action items, and recommendations by U.S. and Japanese experts in reactor safety and plant operations during the September 2024 Forensics Effort meeting. Significant safety insights were obtained in several areas: system and component performance, radionuclide surveys and sampling, debris end-state location, combustible gas effects, and plant operations and maintenance. In addition to reducing uncertainties and knowledge gaps in severe accident modeling progression, these insights continue to be used to assess whether additional updates are needed in guidance for severe accident prevention, mitigation, and emergency planning. Furthermore, Daiichi-related activities, such as code modeling improvements and analysis, testing, and new technology deployment efforts, have the potential to offer additional safety and economic benefits to the operating fleet and new light water reactor (LWR) and non-LWR designs.

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Structural basis of R-loop recognition by the S9.6 monoclonal antibody

R-loops are ubiquitous, dynamic nucleic-acid structures that play fundamental roles in DNA replication and repair, chromatin and transcription regulation, as well as telomere maintenance. The DNA-RNA hybrid–specific S9.6 monoclonal antibody is widely used to map R-loops. Here, we report crystal structures of a S9.6 antigen-binding fragment (Fab) free and bound to a 13-bp hybrid duplex. We demonstrate that S9.6 exhibits robust selectivity in binding hybrids over double-stranded (ds) RNA and in categorically rejecting dsDNA. S9.6 asymmetrically recognizes a compact epitope of two consecutive RNA nucleotides via their 2'-hydroxyl groups and six consecutive DNA nucleotides via their backbone phosphate and deoxyribose groups. Recognition is mediated principally by aromatic and basic residues of the S9.6 heavy chain, which closely track the curvature of the hybrid minor groove. These findings reveal the molecular basis for S9.6 recognition of R-loops, detail its binding specificity, identify a new hybrid-recognition strategy, and provide a framework for S9.6 protein engineering.

59 BASIC BIOLOGICAL SCIENCES↗