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At least 325 records · Page 18

Anaerobic Expression and Purification of Holo-CCIS, an Artificial Iron-sulfur Protein

Iron-sulfur proteins are ubiquitous among all living organisms and are indispensable for almost all metabolic pathways ranging from photosynthesis, respiration, nitrogen, and carbon dioxide cycles. The iron-sulfur clusters primarily serve as electron acceptors and donors and transfer electrons to active sites of various enzymes, thus driving the energy metabolism. Prokaryotes like E. coli have ISC and SUF pathways that help in the assembly and maturation of iron-sulfur proteins. These ironsulfur proteins, especially with [4Fe-4S] clusters, are highly sensitive to molecular oxygen, and it would be advantageous if the de novo proteins and native proteins having iron-sulfur binding sites are expressed and isolated under anaerobic conditions. Bacterially assembled iron-sulfur proteins, when isolated and purified anaerobically, exhibit improved biochemical and biophysical stabilities in comparison to the counterparts expressed and purified aerobically and reconstituted under anaerobic conditions. This protocol outlines the expression and purification of the artificial protein, Coiled-Coil IronSulfur (CCIS). It may be deployed to both natural and artificial [4Fe-4S] proteins when heterologously expressed in E. coli.

Bhanu P. Jagilinki↗

Bonding and Acidity of the Formal Hydride in the Prototypical Au 9 (PPh 3 ) 8 H 2+ Nanocluster

The role of hydrogen atoms as surface ligands on metal nanoclusters is of profound importance but remains difficult to directly study. While hydrogen atoms often appear to be incorporated formally as hydrides, evidence suggests that they donate electrons to the cluster's delocalized superatomic orbitals and may consequently behave as acidic protons that play key roles in synthetic or catalytic mechanisms. Here we directly test this assertion for the prototypical Au 9 (PPh 3 ) 8 H 2+ nanocluster, formed by addition of a hydride to the well-characterized Au 9 (PPh 3 ) 8 3+ . Using gas-phase infrared spectroscopy, we were able to unambiguously isolate Au 9 (PPh 3 ) 8 H 2+ and Au 9 (PPh 3 ) 8 D 2+ , revealing an Au–H stretching mode at 1528 cm –1 that shifts to 1038 cm –1 upon deuteration. This shift is greater than the maximum expected for a typical harmonic potential, suggesting a potential governing cluster-H bonding that has some square-well character consistent with the hydrogen nucleus behaving as a metal atom in the cluster core. Complexing this cluster with very weak bases reveals a redshift of 37 cm –1 in the Au–H vibration, consistent with those typically seen for moderately acidic groups in gas phase molecules and providing an estimate of the acidity of Au 9 (PPh 3 ) 8 H 2+ , at least with regard to its surface reactivity.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

X-ray Properties of the Young Open Clusters HM1 and IC 2944-2948

Using XMM-Newton data, we study for the first time the X-ray emission of HM1 and IC 2944/2948. Low-mass, pre-main-sequence objects with an age of a few Myr are detected, as well as a few background or foreground objects. Most massive stars in both clusters display the usual high-energy properties of that type of objects, though with log [L(sub X)/L(sub BOL)] apparently lower in HM1 than in IC2944/2948. Compared with studies of other clusters, it seems that a low signal-to-noise ratio at soft energies, due to the high extinction, may be the main cause of this difference. In HM1, the two Wolf-Rayet stars show contrasting behaviors:WR89 is extremely bright, but much softer than WR87. It remains to be seen whether wind-wind collisions or magnetically confined winds can explain these emissions. In IC 2944/2948, the X-ray sources concentrate around HD 101205; a group of massive stars to the north of this object is isolated, suggesting that there exist two subclusters in the field-of-view.

X-ray properties↗

Enhancing T c in a composite superconductor/metal bilayer system: A dynamical cluster approximation study

It has been proposed that the superconducting transition temperature T c of an unconventional superconductor with a large pairing scale but strong phase fluctuations can be enhanced by coupling it to a metal. However, the general efficacy of this approach across different parameter regimes remains an open question. Using the dynamical cluster approximation, we study this question in a system composed of an attractive Hubbard layer in the intermediate coupling regime, where the magnitude of the attractive Coulomb interaction |U| is slightly larger than the bandwidth W, hybridized with a noninteracting metallic layer. We find that while the superconducting transition becomes more mean-field-like with increasing interlayer hopping, the superconducting transition temperature T c exhibits a nonmonotonic dependence on the strength of the hybridization t ⊥ . Furthermore, this behavior arises from a reduction of the effective pairing interaction in the correlated layer that outcompetes the growth in the intrinsic pair-field susceptibility induced by the coupling to the metallic layer. We find that the largest T c inferred here for the composite system is comparable to the maximum value currently estimated for the isolated negative-U Hubbard model.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

ReNCAT: The Resilient Node Cluster Analysis Tool

ReNCAT is a software application that suggests microgrid portfolios that reduce the impact of large-scale disruptions to power, as measured by the Social Burden Metric. ReNCAT examines a power distribution network to identify regions that can be isolated into microgrids that enable critical services to be provided even if the remainder of the study area is left without power. ReNCAT operates on a simplified representation of the power grid, one that aggregates and approximates loads and conductors. Microgrids are formed within the power network by setting switch states to split or join portions of the grid. ReNCAT identifies candidate microgrid portfolios with varying tradeoffs between cost and service availability.

24 POWER TRANSMISSION AND DISTRIBUTION↗

An Objective Classification of Saturn Cloud Features from Cassini ISS Images

A k -means clustering algorithm is applied to Cassini Imaging Science Subsystem continuum and methane band images of Saturn's northern hemisphere to objectively classify regional albedo features and aid in their dynamical interpretation. The procedure is based on a technique applied previously to visible- infrared images of Earth. It provides a new perspective on giant planet cloud morphology and its relationship to the dynamics and a meteorological context for the analysis of other types of simultaneous Saturn observations. The method identifies 6 clusters that exhibit distinct morphology, vertical structure, and preferred latitudes of occurrence. These correspond to areas dominated by deep convective cells; low contrast areas, some including thinner and thicker clouds possibly associated with baroclinic instability; regions with possible isolated thin cirrus clouds; darker areas due to thinner low level clouds or clearer skies due to downwelling, or due to absorbing particles; and fields of relatively shallow cumulus clouds. The spatial associations among these cloud types suggest that dynamically, there are three distinct types of latitude bands on Saturn: deep convectively disturbed latitudes in cyclonic shear regions poleward of the eastward jets; convectively suppressed regions near and surrounding the westward jets; and baro-clinically unstable latitudes near eastward jet cores and in the anti-cyclonic regions equatorward of them. These are roughly analogous to some of the features of Earth's tropics, subtropics, and midlatitudes, respectively. This classification may be more useful for dynamics purposes than the traditional belt-zone partitioning. Temporal variations of feature contrast and cluster occurrence suggest that the upper tropospheric haze in the northern hemisphere may have thickened by 2014. The results suggest that routine use of clustering may be a worthwhile complement to many different types of planetary atmospheric data analysis.

atmosphere dynamics↗

Functional CeO x nanoglues for robust atomically dispersed catalysts

Single-atom catalysts make exceptionally efficient use of expensive noble metals and can bring out unique properties. However, applications are usually compromised by limited catalyst stability, which is due to sintering. Although sintering can be suppressed by anchoring the metal atoms to oxide supports, strong metal–oxygen interactions often leave too few metal sites available for reactant binding and catalysis, and when exposed to reducing conditions at sufficiently high temperatures, even oxide-anchored single-atom catalysts eventually sinter. Here we show that the beneficial effects of anchoring can be enhanced by confining the atomically dispersed metal atoms on oxide nanoclusters or ‘nanoglues’, which themselves are dispersed and immobilized on a robust, high-surface-area support. We demonstrate the strategy by grafting isolated and defective CeO x nanoglue islands onto high-surface-area SiO 2 ; the nanoglue islands then each host on average one Pt atom. Further, we find that the Pt atoms remain dispersed under both oxidizing and reducing environments at high temperatures, and that the activated catalyst exhibits markedly increased activity for CO oxidation. We attribute the improved stability under reducing conditions to the support structure and the much stronger affinity of Pt atoms for CeO x than for SiO 2 , which ensures the Pt atoms can move but remain confined to their respective nanoglue islands. The strategy of using functional nanoglues to confine atomically dispersed metals and simultaneously enhance their reactivity is general, and we anticipate that it will take single-atom catalysts a step closer to practical applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Is Jet Re-orientation the Elusive Trigger for Star Formation Suppression in Radio Galaxies?

Abstract Jet re-orientation associated with the time evolution of radio quasars explains the formation of X-shaped radio galaxies and their preference for isolated environments. But since X-shaped radio galaxies are generally not found in dense environments (e.g., groups/clusters), the jet re-orientation phenomenon for radio galaxies in groups and clusters has been ignored. We take a closer look at the re-orientation of FRI jets with respect to FRII jets, and find that it may constitute the as-yet unidentified trigger for star formation suppression in radio galaxies. We show how the recently explored radio “red geyser” galaxies can be interpreted in this context and ultimately reveal a deeper understanding of why FRII radio galaxies are on one side of the star formation enhancement/suppression divide compared to FRI radio galaxies.

Astronomy & Astrophysics↗

Pilot personality and crew coordination - Implications for training and selection

It is contended that past failures to find linkages between performance and personality were due to a combination of premature performance evaluation, inadequate statistical modeling, and/or the reliance on data gathered in contrived as opposed to realistic situations. The goal of the research presented is to isolate subgroups of pilots along performance-related personality dimensions and to document limits on the impact of crew coordination training between the groups. Three different profiles were identified through cluster analysis of personality scales that replicated across samples and predicted attitude change following training in crew coordination.

Chidester, Thomas R.↗

Atmospheric Blocking and Atlantic Multi-Decadal Ocean Variability

Based on the 20th century atmospheric reanalysis, winters with more frequent blocking, in a band of blocked latitudes from Greenland to Western Europe, are found to persist over several decades and correspond to a warm North Atlantic Ocean, in-phase with Atlantic multi-decadal ocean variability. Atmospheric blocking over the northern North Atlantic, which involves isolation of large regions of air from the westerly circulation for 5 days or more, influences fundamentally the ocean circulation and upper ocean properties by impacting wind patterns. Winters with clusters of more frequent blocking between Greenland and western Europe correspond to a warmer, more saline subpolar ocean. The correspondence between blocked westerly winds and warm ocean holds in recent decadal episodes (especially, 1996-2010). It also describes much longer-timescale Atlantic multidecadal ocean variability (AMV), including the extreme, pre-greenhouse-gas, northern warming of the 1930s-1960s. The space-time structure of the wind forcing associated with a blocked regime leads to weaker ocean gyres and weaker heat-exchange, both of which contribute to the warm phase of AMV.

Haekkinen, Sirpa↗

Atmospheric Blocking and Atlantic Multidecadal Ocean Variability

Atmospheric blocking over the northern North Atlantic, which involves isolation of large regions of air from the westerly circulation for 5 days or more, influences fundamentally the ocean circulation and upper ocean properties by affecting wind patterns. Winters with clusters of more frequent blocking between Greenland and western Europe correspond to a warmer, more saline subpolar ocean. The correspondence between blocked westerly winds and warm ocean holds in recent decadal episodes (especially 1996 to 2010). It also describes much longer time scale Atlantic multidecadal ocean variability (AMV), including the extreme pre-greenhouse-gas northern warming of the 1930s to 1960s. The space-time structure of the wind forcing associated with a blocked regime leads to weaker ocean gyres and weaker heat exchange, both of which contribute to the warm phase of AMV.

Hakkinen, Sirpa↗

Optimizing Single Nuclei Sequencing of Brain Samples From Space Flown Mice Across Age and Strain

The NASA GeneLab Sample Processing Laboratory offers high-throughput sequencing services to NASA-funded space biology researchers. Space biology studies have specific challenges such as low sample numbers, introducing susceptibility to batch effects from sample handling. These issues are compounded by complex protocols such as single-nuclei isolation and sequencing, which has recently become an attractive methodology for assessing the cellular diversity within spaceflight samples. High quality single-nuclei sequencing requires reproducible protocols to dissociate tissue and generate clean suspension of intact single nuclei. Producing single-nuclei suspension from brain tissue is particularly challenging due to cell type heterogeneity and the myelin sheath that carries over into the nuclei suspension as debris. Current procedures tend to be time consuming and sometimes include steps that can alter gene expression and create cell-type bias. Commercially available nuclei isolation kits, such as the 10X Genomics nuclei isolation kit, offers a streamlined way to process samples for nuclei isolation, thereby minimizing batch effects and enabling reproducibility. In this study, we report on the performance of the 10X Genomics nuclei isolation kit and Chromium Next GEM Single Cell Multiome ATAC + Gene Expression kit to generate sequencing libraries from space-flown mouse brain samples. Single nuclei sequencing was performed on frozen mouse brain tissue from two spaceflight missions, Rodent Research-10 (RR-10) and RR Reference Mission-2 (RRRM-2). RR-10 mice were female B6129SF2/J, euthanized at 18-19 weeks whereas RRRM-2 mice were female C57BL/6NTac, euthanized at 20 or 37 weeks. Sequencing data was processed using standard GeneLab data processing pipelines. We report evaluation of the performance of the 10X Genomics nuclei isolation kit for spaceflight samples from mouse brain, and evaluation of reproducibility across different mouse strains and age groups. We also report preliminary scientific results including cell type inference, cell clustering, and differentially expressed genes and pathways between spaceflight and ground control samples.

RR-10↗

Electrocatalytic Hydrogen Evolution at Full Atomic Utilization over ITO-Supported Sub-nano-Pt n Clusters: High, Size-Dependent Activity Controlled by Fluxional Pt Hydride Species

A combination of density functional theory (DFT) and experiments with atomically size-selected Pt n clusters deposited on indium-tin oxide (ITO) electrodes was used to examine the effects of applied potential and Pt n size on the electrocatalytic activity of Pt n (n = 1, 4, 7, 8) for the hydrogen evolution reaction (HER). Activity is found to be negligible for isolated Pt atoms on ITO, increasing rapidly with Pt n size, such that Pt 7 /ITO and Pt 8 /ITO have roughly double the activity per Pt atom compared to atoms in the surface layer of polycrystalline Pt. Both DFT and experiment find that hydrogen under-potential deposition (H upd ) results in Pt n /ITO (n = 4, 7, 8) adsorbing ~2 H atoms/Pt atom at the HER threshold potential, equal to ca. double the Hupd observed for Pt bulk or nanoparticles. Here, the cluster catalysts under electrocatalytic conditions are hence best described as a Pt hydride compound, significantly departing from a metallic Pt cluster. The exception is Pt 1 /ITO, where H adsorption at the HER threshold potential is energetically unfavorable. Theory combines global optimization with grand canonical approaches for the influence of potential, uncovering that several metastable structures contribute to HER, changing with the applied potential. It is hence critical to include reactions of the ensemble of energetically accessible Pt n H x /ITO structures to correctly predict the activity vs. Pt n size and applied potential. For the small clusters, spillover of H ads from the clusters to the ITO support is significant, resulting in a competing channel for loss of H ads , particularly at slow potential scan rates.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Joint galaxy–galaxy lensing and clustering constraints on galaxy formation

ABSTRACT We compare predictions for galaxy–galaxy lensing profiles and clustering from the Henriques et al. public version of the Munich semi-analytical model (SAM) of galaxy formation and the IllustrisTNG suite, primarily TNG300, with observations from KiDS + GAMA and SDSS-DR7 using four different selection functions for the lenses (stellar mass, stellar mass and group membership, stellar mass and isolation criteria, and stellar mass and colour). We find that this version of the SAM does not agree well with the current data for stellar mass-only lenses with $M_\ast \gt 10^{11}\, \mathrm{ M}_\odot$. By decreasing the merger time for satellite galaxies as well as reducing the radio-mode active galactic nucleus accretion efficiency in the SAM, we obtain better agreement, both for the lensing and the clustering, at the high-mass end. We show that the new model is consistent with the signals for central galaxies presented in Velliscig et al. Turning to the hydrodynamical simulation, TNG300 produces good lensing predictions, both for stellar mass-only (χ2 = 1.81 compared to χ2 = 7.79 for the SAM) and locally brightest galaxy samples (χ2 = 3.80 compared to χ2 = 5.01). With added dust corrections to the colours it matches the SDSS clustering signal well for red low-mass galaxies. We find that both the SAMs and TNG300 predict $\sim 50\, {{\ \rm per\ cent}}$ excessive lensing signals for intermediate-mass red galaxies with 10.2 < log10M*[M⊙] < 11.2 at $r \approx 0.6\, h^{-1}\, \text{Mpc}$, which require further theoretical development.

79 ASTRONOMY AND ASTROPHYSICS↗

Crystalline phase transitions and water-soluble complexes of copper(Ⅰ) 2-hydroxyethanethiolate

We report the coordination polymer copper(I) 2-hydroxyethanethiolate, (CuSCH 2 CH 2 OH) n , though insoluble in all common solvents, dissolved readily in basic aqueous solutions of the thiolate anion (HOCH 2 CH 2 S – ) of 2-mercaptoethanol to form a single species: the tetranuclear cluster [Cu 4 (μ-SCH 2 CH 2 OH) 6 ] 2– . From this solution were grown X-ray quality single crystals of copper(I) 2-hydroxyethanethiolate. This compound underwent a hitherto unknown crystal phase transition at ca. 6 °C, from point group P2 1 2 1 2 1 to Pna2 1 , with noticeable changes in the geometry of the Cu-S layer and in the orientation of the alkylthiolate side chains. When the bulky base tetrabutylammonium hydroxide was employed in the aqueous thiolate solution used to dissolve (CuSCH 2 CH 2 OH) n , the water-soluble polynuclear copper(I) complex bis(tetrabutylammonium) hexakis(μ-2-hydroxyethanethiolato) tetracuprate(I), [(C 4 H 9 ) 4 N] 2 [Cu 4 (μ-SCH 2 CH 2 OH) 6 ], could be isolated as X-ray quality crystals. Structural characterization of this complex revealed a tetrahedral arrangement of copper(I) centers with thiolates bridging the edges of the tetrahedra. On standing, this complex degraded to a larger polynuclear Cu(I) sulfide cluster.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

In situ Gas Cell TEM Investigation of Nanoporous and Zeolite-based Nanocatalysts

A crucial application of in situ transmission electron microscopy is the understanding of nanocatalysts and the effect of the environment on their structure. Pre-treatments, such as calcination or annealing, can dramatically impact the catalytic properties by modifying the morphology and composition of nanostructures. Zeolites and nanoporous structures are particularly sensitive to reactive environments as the porosity or the chemical state can substantially change during the interaction with gases at elevated temperatures.[1] For instance, it has been shown that heating in air causes redispersion of sintered Cu clusters on zeolite, improving the catalytic properties.[2] These observations are possible though innovative in situ TEM gas holders, where the samples are enclosed into a small cell with SiNx windows, isolating the reactive environment from the rest of the column. [3] Here, we present in situ gas cell experiments of sensitive nanoporous structure and zeolite-based nanocatalysts. Scanning transmission electron microscopy (STEM) and electron energy-loss spectroscopy were used to understand migration of Al during calcination. In situ diagnostics also help distinguish Al as Bronsted sites, extra-framework Lewis sites, or bulk alumina. More broadly, in situ gas-heating TEM experiments are useful to determine chemical changes and modification of morphology of sensitive nanocatalysts upon pre-treatment (Figure 1).[4] Detailed in situ STEM and energy-dispersive X-ray spectroscopy (EDS) demonstrated compositional changes in nanoporous CuAlTi structures for hydrogen-deuterium exchange (H2-D2) reaction. Coarsening due to annealing at high temperature, a necessary steps for the preparation of catalysts, can be reversed by applying a redox cycle. Using the wide range of gases and temperature, the diagnostics are helpful to derive fundamental understanding of these catalysts at the atomic scale and also provide general guidelines to improve their design.

Foucher, Alexandre [ORNL] (ORCID:0000000150424002)↗

CGOLS V: Disk-wide Stellar Feedback and Observational Implications of the Cholla Galactic Wind Model

Abstract We present the fifth simulation in the Cholla Galactic OutfLow Simulation (CGOLS) project—a set of isolated starburst galaxy simulations modeled over large scales (10 kpc) at uniformly high resolution (Δx≈ 5 pc). Supernova feedback in this simulation is implemented as a disk-wide distribution of clusters, and we assess the impact of this geometry on several features of the resulting outflow, including the radial profiles of various phases; mass, momentum, and energy outflow rates; covering fraction of cool gas; mock absorption-line spectra; and X-ray surface brightness. In general, we find that the outflow generated by this model is cooler, slower, and contains more mass in the cool phase than a more centrally concentrated outflow driven by a similar number of supernovae. In addition, the energy loading factors in the hot phase are an order of magnitude lower, indicating much larger losses due to radiative cooling in the outflow. However, coupling between the hot and cool phases is more efficient than in the nuclear burst case, with almost 50% of the total outflowing energy flux carried by the cool phase at a radial distance of 5 kpc. These physical differences have corresponding signatures in observable quantities: the covering fraction of cool gas is much larger, and there is greater evidence of absorption in low and intermediate ionization energy lines. Taken together, our simulations indicate that centrally concentrated starbursts are more effective at driving hot, low-density outflows that will expand far into the halo, while galaxy-wide bursts may be more effective at removing cool gas from the disk.

Astronomy & Astrophysics↗

Analysis of the PKS0637-752 X-Ray Jet System

The X-ray jet emitted from the quasar PKS0637-752 is the largest and most luminous detected to date. It extends 10 arcsec west of the nucleus, and is coincident with GHz radio jet emission in this region. If the individual X-ray/optical/radio knots in this jet were detected as isolated objects, they might be classified as BL Lac objects or quasars. We present a detailed analysis of the Chandra observations of this system, including a search for an intra-cluster medium to confine the jet, and limits to X-ray emission from the eastern radio knot and past the bend of the radio jet to the northwest. The projection in the plane of the sky implies that the X-ray jet is an aligned extension of the pc-scale jet, for which VLBI/VSOP observations show super-luminal motion with an apparent velocity of 11c. In this case, the X-ray jet is of order 1 Mpc in length, and explaining the X-ray emission mechanism presents new challenges.

Schwartz, D. A.↗