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At least 325 records · Page 18
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Hidden conformal symmetries from Killing towers with an application to large-D/CFT

We generalize the notion of hidden conformal symmetry in Kerr/CFT to Kerr-(A)dS black holes in arbitrary dimensions. We build the SL(2, R) generators directly from the Killing tower, whose Killing tensors and Killing vectors enforce the separability of the equations of motion. Our construction amounts to an explicit relationship between hidden conformal symmetries and Killing tensors: we use the Killing tower to build a novel tensor equation connecting the SL(2,R) Casimir with the radial Klein-Gordon operator. For asymptotically flat black holes in four and five dimensions we recover previously known results that were obtained using the ``near-region'' limit and the monodromy method. We then perform a monodromy evaluation of the Klein-Gordon scalar wave equation for all Kerr-(A)dS black holes, finding explicit forms for the zero mode symmetry generators. We also extend this analysis to the large-dimensional Schwarzschild black hole as a step towards buliding a Large-D/CFT correspondence.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2024

Conformal boundary conditions for a 4d scalar field

We construct unitary, stable, and interacting conformal boundary conditions for a free massless scalar in four dimensions by coupling it to edge modes living on a boundary. The boundary theories we consider are bosonic and fermionic QED _3 3 with N_f N f flavors and a Chern-Simons term at level k k , in the large- N_f N f limit with fixed k/N_f k / N f . We find that interacting boundary conditions only exist when k≠ 0 k ≠ 0 . To obtain this result we compute the \beta β functions of the classically marginal couplings at the first non-vanishing order in the large- N_f N f expansion, and to all orders in k/N_f k / N f and in the couplings. To check vacuum stability we also compute the large- N_f N f effective potential. We compare our results with the the known conformal bootstrap bounds.

Di Pietro, Lorenzo (ORCID:0000000174965276)↗
DOE OSTI2025

Conformal Hierarchical Simulation-Based Inference with Local Validity

Trustworthy and interpretable uncertainty quantification is a long-standing challenge in artificial intelligence. Simulation-based inference (SBI) comprises a broad swath of approaches for estimating latent parameters with uncertainties. Although flexible neural density estimators in SBI can be remark- ably expressive capturing highly structured, high-dimensional posteriors their credible regions can be badly mis-calibrated and are often only accompanied by heuristic coverage checks. We present the first SBI framework that delivers finite-sample local valid coverage guarantees that hold in the neighborhood of each observation. Our framework can couple any off-the-shelf hierarchical SBI engine with a confor- mal Bayesian post-processing step that operates on the posterior predictive density. A kernel-weighted conformity score adapts the conformal quantile to the local geometry of the data, yielding prediction sets that are simultaneously (i) marginally calibrated, (ii) locally valid, and (iii) hierarchical, handling global and observation-specific parameters in a single pass. Through experiments on synthetic data and benchmarks from neuroscience and physics, we show that our approach attains 1 − α coverage, where prior SBI methods under- or over-cover. Our approach also maintains a competitive, credible set size with minimal computational overhead. Finally, our approach can be used to make predictions on real data and give valid credible regions modulo weight-initialization-based model mis-specification.

Trivedi, Shubhendu [Fermilab]↗
DOE OSTI2020

Protein Conformational States—A First Principles Bayesian Method

Automated identification of protein conformational states from simulation of an ensemble of structures is a hard problem because it requires teaching a computer to recognize shapes. We adapt the naïve Bayes classifier from the machine learning community for use on atom-to-atom pairwise contacts. The result is an unsupervised learning algorithm that samples a ‘distribution’ over potential classification schemes. We apply the classifier to a series of test structures and one real protein, showing that it identifies the conformational transition with >95% accuracy in most cases. A nontrivial feature of our adaptation is a new connection to information entropy that allows us to vary the level of structural detail without spoiling the categorization. This is confirmed by comparing results as the number of atoms and time-samples are varied over 1.5 orders of magnitude. Further, the method’s derivation from Bayesian analysis on the set of inter-atomic contacts makes it easy to understand and extend to more complex cases.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2026

Fyn–Saracatinib Complex Structure Reveals an Active State-like Conformation

Fyn is a Src-family tyrosine kinase implicated in synaptic dysfunction and neuroinflammation across multiple neurodegenerative disorders, including Alzheimer’s disease (AD) and Parkinson’s disease (PD). Saracatinib (AZD0530) is a potent Src-family inhibitor that has been explored as a repurposed therapeutic; however, its clinical utility is limited by poor kinase selectivity caused by high sequence conservation within Src-family ATP-binding sites. Here, we combine surface plasmon resonance (SPR) and X-ray crystallography to define saracatinib recognition by the Fyn kinase domain (KD). SPR single-cycle kinetics shows that saracatinib binds the isolated Fyn KD and full-length Fyn with low-nanomolar affinity, whereas dasatinib binds with subnanomolar affinity and markedly slower dissociation. We determined the crystal structure of the Fyn KD-saracatinib complex at 2.22 Å resolution. The kinase adopts an active-like conformation with the DFG motif and αC-helix in the ‘in’ state and a conserved β3 αC Lys-Glu salt bridge. Saracatinib occupies the adenine and ribose pockets, and engages the hinge through direct and water-mediated hydrogen bonding while complementing a hydrophobic back pocket by van der Waals contacts. Comparison with reported saracatinib-bound structures of other kinases suggests that the active-state geometry observed for Fyn creates a pocket not observed in inactive-like complexes, providing a structural handle for designing Fyn-selective inhibitors. Comparison with all saracatinib-bound kinase co-structures currently available in the PDB (ALK2 and PKMYT1) indicates a conserved monodentate hinge binding mode but kinase-dependent αC-helix conformations, providing a structural rationale for designing Fyn-selective analogues.

AZD0530↗
DOE OSTI2026

UL 1741SC Conformance Development, Evaluation, and Proposal [Slides]

V2G AC is a type of grid interconnection by mobile battery that transforms an EV into a DER with the potential to stabilize the grid and lower costs for electricity. UL 1741SC is a critical new standard to enable grid interconnection of V2G AC-capable vehicles, by defining requirements for V2G AC-intended EVSEs as a gatekeeper between the grid and the EV to support grid safety, such as through redundant voltage trip (namely oversight). EVSE manufacturers need a clear set of conformance test cases and criteria by which to evaluate their equipment and confirm the compliance with UL 1741SC, so that the EVSEs performs as intended for the grid safety. Hence, NLR identified necessary conformance tests and performed the tests identified to understand the maturity.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2023

Gating interactions steer loop conformational changes in the active site of the L1 metallo-β-lactamase

β-Lactam antibiotics are the most important and widely used antibacterial agents across the world. However, the widespread dissemination of β-lactamases among pathogenic bacteria limits the efficacy of β-lactam antibiotics. This has created a major public health crisis. The use of β-lactamase inhibitors has proven useful in restoring the activity of β-lactam antibiotics, yet, effective clinically approved inhibitors against class B metallo-β-lactamases are not available. L1, a class B3 enzyme expressed by Stenotrophomonas maltophilia , is a significant contributor to the β-lactam resistance displayed by this opportunistic pathogen. Structurally, L1 is a tetramer with two elongated loops, α3-β7 and β12-α5, present around the active site of each monomer. Residues in these two loops influence substrate/inhibitor binding. To study how the conformational changes of the elongated loops affect the active site in each monomer, enhanced sampling molecular dynamics simulations were performed, Markov State Models were built, and convolutional variational autoencoder-based deep learning was applied. The key identified residues (D150a, H151, P225, Y227, and R236) were mutated and the activity of the generated L1 variants was evaluated in cell-based experiments. The results demonstrate that there are extremely significant gating interactions between α3-β7 and β12-α5 loops. Taken together, the gating interactions with the conformational changes of the key residues play an important role in the structural remodeling of the active site. These observations offer insights into the potential for novel drug development exploiting these gating interactions.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Staphylococcus aureus FtsZ and PBP4 bind to the conformationally dynamic N-terminal domain of GpsB

In the Firmicutes phylum, GpsB is a membrane associated protein that coordinates peptidoglycan synthesis with cell growth and division. Although GpsB has been studied in several bacteria, the structure, function, and interactome of Staphylococcus aureus GpsB is largely uncharacterized. To address this knowledge gap, we solved the crystal structure of the N-terminal domain of S. aureus GpsB, which adopts an atypical, asymmetric dimer, and demonstrates major conformational flexibility that can be mapped to a hinge region formed by a three-residue insertion exclusive to Staphylococci. When this three-residue insertion is excised, its thermal stability increases, and the mutant no longer produces a previously reported lethal phenotype when overexpressed in Bacillus subtilis. In S. aureus, we show that these hinge mutants are less functional and speculate that the conformational flexibility imparted by the hinge region may serve as a dynamic switch to fine-tune the function of the GpsB complex and/or to promote interaction with its various partners. Furthermore, we provide the first biochemical, biophysical, and crystallographic evidence that the N-terminal domain of GpsB binds not only PBP4, but also FtsZ, through a conserved recognition motif located on their C-termini, thus coupling peptidoglycan synthesis to cell division. Taken together, the unique structure of S. aureus GpsB and its direct interaction with FtsZ/PBP4 provide deeper insight into the central role of GpsB in S. aureus cell division.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1976

Conformal coordinates associated with uniformly accelerated motion

Specific problems in the theory of relativity are often simplified by an appropriate choice of the coordinate system. Restricted conformal coordinates provide an especially simple analysis of motion with uniform acceleration, known as hyperbolic motion. Conformal coordinates x', t' may be obtained from Cartesian coordinates x, t by the transformation x'+ct'=F(x+ct) and x'-ct'=G(x-ct), where c is the velocity of light. A variable motion of the x' system is determined by the choice of the functions F and G.

Jones, R. T.↗
NASA NTRS1976

Conformal coordinates associated with space-like motions

Conformal transformations in two dimensions provide a simple extension of the Lorentz transformation. The velocity of light appears in such transformations as a singular velocity rather than as an upper limit for the velocity. A well ordered branch of the theory exists for velocities in excess of the velocity of light. If the velocity of a point exceeds the singular velocity in an inertial system, then the conformal representation of the motion is no longer uniform, but contains a folded region. However, the branching of the transformation may be determined so that the elapsed time along the path of such a motion remains positive. Kinematic relations on the other side of the singular velocity seem to complement the usual results of relativity theory in an interesting way. Thus it is known that motion at the speed of light occurs along a null geodesic, and hence corresponds in a certain sense to motion at infinite velocity. The complementary relation is that a motion of infinite velocity corresponds in the same sense to motion at the speed of light.

Jones, R. T.↗
NASA NTRS1980

A body-fitted conformal mapping method with grid-spacing control

It is demonstrated by analyses and by numerical illustrations that any arbitrarily prescribed contour, open or closed, can be mapped conformally onto a simple contour, such as a unit circle, using any arbitrarily prescribed distribution of scale factor of transformation. This flexibility of selecting a scale factor distribution on the contour is not in violation of the well-known Riemann's uniqueness theory for conformal mapping.

Wu, J. C.↗
NASA NTRS1980

A search for the lowest-energy conformer of interstellar glycine

The first search for the lowest-energy conformation of interstellar glycine has been carried out. An emission line has been detected in Sgr B2 which is coincident in frequency with the J(K-K+) = 14(1, 14)-13(1, 13) transition of conformer I glycine; while the carrier of the observed line is uncertain, no other frequency-coincident species are known, and hence glycine cannot be ruled out. Several previously unidentified lines have been identified as methyl formate. Evidence for the existence of the elusive interstellar ethylene oxide, the only reported interstellar ring-structure molecule, is discussed.

Hollis, J. M.↗
NASA NTRS1982

Fast generation of three-dimensional computational boundary-conforming periodic grids of C-type

A fast computer program, GRID3C, was developed to generate multilevel three dimensional, C type, periodic, boundary conforming grids for the calculation of realistic turbomachinery and propeller flow fields. The technique is based on two analytic functions that conformally map a cascade of semi-infinite slits to a cascade of doubly infinite strips on different Riemann sheets. Up to four consecutively refined three dimensional grids are automatically generated and permanently stored on four different computer tapes. Grid nonorthogonality is introduced by a separate coordinate shearing and stretching performed in each of three coordinate directions. The grids are easily clustered closer to the blade surface, the trailing and leading edges and the hub or shroud regions by changing appropriate input parameters. Hub and duct (or outer free boundary) have different axisymmetric shapes. A vortex sheet of arbitrary thickness emanating smoothly from the blade trailing edge is generated automatically by GRID3C. Blade cross sectional shape, chord length, twist angle, sweep angle, and dihedral angle can vary in an arbitrary smooth fashion in the spanwise direction.

Dulikravich, D. S.↗
NASA NTRS1983

An extensive galactic search for conformer II glycine

The most extensive galactic search reported to date for conformer II glycine, a higher energy form of the simplest amino acid has been conducted. The search utilized four glycine transitions at centimeter wavelengths and 21 at millimeter wavelengths to observe 18 galactic molecular sources and one comet. No conformer II glycine lines were detected, and measurements of representative sources were used to compute upper limits on total column densities. Several unidentified lines were detected and are reported here with some suggested possible identifications.

Snyder, L. E.↗
NASA NTRS1985

The geometric properties of Landsat-5 Thematic Mapper data and their conformity to Landsat-4 data and to earth's surface geometry

The geometry of two TIPS processed Landsat-5 Thematic Mapper scenes was analyzed and compared with that of SCROUNGE processed Landsat-4 data. Swath-to-swath and band-to-band registration of Washington, DC, and northeastern Iowa scenes was found to be similar to or better than that of Landsat-4 data. Results indicate a high degree of geometric conformity between the images produced by the different systems. The geometric conformity of the TIPS processed images to the Space Oblique Mercator projection, however, proved to be less accurate than the targeted processing error of 15 meters.

Walker, R. E.↗
NASA NTRS1990

Qualitative evaluation of a conformal velocity vector display for use at high angles-of-attack in fighter aircraft

A piloted simulation study was conducted to evaluate the utility of a display device designed to illustrate graphically and conformally the approximate location of a fighter aircraft's velocity vector. The display device consisted of two vertical rows of light emitting diodes (LED's) located toward the center of the cockpit instrument panel to each side of the control stick. The light strings provided a logical extension of the head up display (HUD) velocity vector symbol at flight path angles which exceeded the HUD field-of-view. Four test subjects flew a modified F/A-18 model with this display in an air-to-air engagement task against an equally capable opponent. Their responses to a questionnaire indicated that the conformal velocity vector information could not be used during the scenarios investigated due to the inability to visually track a target and view the lights simultaneously.

Jones, Denise R.↗
NASA NTRS1991

A conformal block structured grid for turbomachinery cascades in two dimensions

A block structured conformal transformation is presented for application to turbomachinery cascades. In comparison with the traditional single block cases that are, at best, supplemented with branch cuts, there is a richer variety of choices for the grid topology. The choice presented leads to a substantial improvement in the grid quality. This is reflected in a relatively uniform covering of the cascade region. While grid clustering is not intended or supplied with the block conformal structure, it can be injected afterwards. When viewed as a controlled experiment, the present study provides a significant example of the effect of grid topology upon the grid quality. In a larger sense, this puts some focus upon the effects of grid topology in more general situations.

Wang, Zhu↗