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At least 325 records · Page 18

Short-Term Stable Isotope Probing of Proteins Reveals Taxa Incorporating Inorganic Carbon in a Hot Spring Microbial Mat

The upper green layer of the chlorophototrophic microbial mats associated with the alkaline siliceous hot springs of Yellowstone National Park consists of oxygenic cyanobacteria ( Synechococcus spp.), anoxygenic Roseiflexus spp., and several other anoxygenic chlorophototrophs. Synechococcus spp. are believed to be the main fixers of inorganic carbon (C i ), but some evidence indicates that Roseiflexus spp. also contribute to inorganic carbon fixation during low-light, anoxic morning periods. Contributions of other phototrophic taxa have not been investigated. In order to follow the pathway of C i incorporation into different taxa, mat samples were incubated with [ 13 C]bicarbonate for 3 h during the early-morning, low-light anoxic period. Extracted proteins were treated with trypsin and analyzed by mass spectrometry, leading to peptide identifications and peptide isotopic profile signatures containing evidence of 13 C label incorporation. A total of 25,483 peptides, corresponding to 7,221 proteins, were identified from spectral features and associated with mat taxa by comparison to metagenomic assembly sequences. A total of 1,417 peptides, derived from 720 proteins, were detectably labeled with 13 C. Most 13 C-labeled peptides were derived from proteins of Synechococcus spp. and Roseiflexus spp. Chaperones and proteins of carbohydrate metabolism were most abundantly labeled. Proteins associated with photosynthesis, C i fixation, and N 2 fixation were also labeled in Synechococcus spp. Importantly, most proteins of the 3-hydroxypropionate bi-cycle for C i fixation in Roseiflexus spp. were labeled, establishing that members of this taxocene contribute to C i fixation. Other taxa showed much lower [ 13 C]bicarbonate incorporation. IMPORTANCE Yellowstone hot spring mats have been studied as natural models for understanding microbial community ecology and as modern analogs of stromatolites, the earliest community fossils on Earth. Stable-isotope probing of proteins (Pro-SIP) permitted short-term interrogation of the taxa that are involved in the important process of light-driven C i fixation in this highly active community and will be useful in linking other metabolic processes to mat taxa. Here, evidence is presented that Roseiflexus spp., which use the 3-hydroxypropionate bi-cycle, are active in C i fixation. Because this pathway imparts a lower degree of selection of isotopically heavy C i than does the Calvin-Benson-Bassham cycle, the results suggest a mechanism to explain why the natural abundance of 13 C in mat biomass is greater than expected if only the latter pathway were involved. Understanding how mat community members influence the 13 C/ 12 C ratios of mat biomass will help geochemists interpret the 13 C/ 12 C ratios of organic carbon in the fossil record.

59 BASIC BIOLOGICAL SCIENCES↗

A Positive Low Cloud–Sea Surface Temperature Feedback in the East Asian Marginal Seas during El Niño Mature Winters and Their Following Spring

During the winter and subsequent spring of an El Niño year, the East Asian marginal sea (EAMS) exhibits positive sea surface temperature anomalies (SSTAs) and fewer low clouds, while the western North Pacific experiences negative SSTAs. In this study, we suggest that the positive SSTAs in EAMS are maintained by a positive low cloud–SST feedback. In neutral winters and springs, the EAMS is covered by low clouds, which have a cooling effect on surface temperatures. During an El Niño year, a western North Pacific anomalous anticyclone is established, and along its northwestern flank, there are favorable conditions for convergence of moisture and weaker surface latent heat flux over the EAMS. Once a positive SSTA has been established, a further reduction of turbulent mixing results in less low cloud and enhanced solar heating of the ocean mixed layer; this reinforces and maintains both the positive SSTA and the lack of low cloud via a positive feedback mechanism. Further, the concurrent increase of low cloud–SST feedback and anticyclone circulation strengths is evident in the coupled-model simulations from phase 6 of the Coupled Model Intercomparison Project. Furthermore, sensitivity experiments, performed with the atmospheric components of Community Earth System Model (CESM2), reveal that a positive SSTA helps to maintain the western North Pacific anomalous anticyclone. Four pacemaker-coupled experiments by CESM2, with sea surface temperature in the equatorial Pacific restored to the observational anomalies plus the model climatology and altered low cloud feedback over EAMS, suggest that the low cloud–SST feedback results in more than the maintenance of a positive SSTA over the EAMS: the positive feedback is also a previously overlooked mechanism for the maintenance of the western North Pacific anomalous anticyclone.

54 ENVIRONMENTAL SCIENCES↗

Areas with Surface Thermal Anomalies as Detected by ASTER and LANDSAT Data around Pinkerton Hot Springs, Colorado

This map shows areas of anomalous surface temperature in northern Saguache Counties identified from ASTER and LANDSAT thermal data and spatial based insolation model. The temperature for the ASTER data was calculated using the Emissivity Normalization Algorithm that separate temperature from emissivity. The incoming solar radiation was calculated using spatial based insolation model developed by Fu and Rich (1999). Then the temperature due to solar radiation was calculated using emissivity derived from ASTER data. The residual temperature, i.e. temperature due to solar radiation subtracted from ASTER temperature was used to identify thermally anomalous areas. Areas having anomalous temperature in the ASTER data are shown in blue diagonal hatch, while areas having anomalous temperature in the LANDSAT data are shown in magenta on the map. Thermal springs and areas with favorable geochemistry are also shown. Springs or wells having non-favorable geochemistry are shown as blue dots.

15 GEOTHERMAL ENERGY↗

TEAMER: Sandia and CalWave Torque Spring Assessment

Power-take-off (PTO) systems for wave energy converters (WEC) require restoring forces for efficient hydrodynamic as well as mechanical to electric power transfer. Implementation of an effective spring mechanism that can provide a restoring torque on e.g. a rotational, winch type PTO shaft is challenging. SNL in collaboration with CalWave, will use numerical finite element simulations to study application of mechanical torsion springs as a highly efficient restoring force element for CalWave's rotational PTO. Material studies will include common steel as a baseline and potentially advanced materials such as fiber composite materials with different cross-sectional profiles. Test report including description and results of FEA (finite element analysis) models. Excel sheet summarizes which scripts were used for which tables and figures in the report. Part of TEAMER request for technical support (RFTS 1) award to CalWave and Sandia National Lab (SNL).

16 TIDAL AND WAVE POWER↗

Schneider Springs Fire Study 2023 for Ecosystem Respiration Rates: Surface Water Chemistry and Hydrologic Sensor Data across the Yakima River Basin, Washington, USA (v2)

This dataset supports a broader study examining the drivers of spatial variability in wildfire impacts across the Yakima River Basin. Data provided within this dataset were generated from sample collection across 17 total sites (8 sites affected by a recent wildfire, 9 sites unaffected by a recent wildfire) within multiple rivers throughout the Yakima River Basin in Washington, USA from May-July 2023. Fire affected sites are defined as those affected by the 2021 Schneider Springs Fire, based on the drainage area of the streams being within the 2021 Schneider Springs Fire burn perimeter or not (Figure 1, below). The contents include surface water geochemistry data (dissolved organic carbon; total dissolved nitrogen; total suspended solids); short-term sonde data (specific conductivity; turbidity; pH; chlorophyll A; temperature); stream depth data; stream velocity; manual chamber open channel respiration data; sensor time-series data (oxygen; water pressure; barometric pressure); field metadata (including qualitative information on in stream and river corridor characteristics); and environmental context photos taken in the field. The dataset also includes a summary file of the sensor data and plots of the sensor data. Sensors were only recovered at 15 out of the 17 sites, and not all sensors were recovered at all 15 sites (see Methods section for more details), therefore all data does not exist at all sites. Data from a 2022 study at the same sites, as well as additional sites, can be found at https://data.ess-dive.lbl.gov/view/doi:10.15485/1969566. The data package was originally published in November 2023. It was updated in June 2025 (v2; modified files). See the change history section in the readme for more details. For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. This dataset is comprised of one folder with field photos and one main data folder with two subfolders. The main data folder consists of (1) file-level metadata; (2) data dictionary; (3) field metadata; (4) field protocol; (5) readme; (6) international generic sample number (IGSN) mapping file; and (7) stream depth and averages. The sensor data subfolder consists of (1) sensor installation methods summary; (2) stream velocity; and (3) six subfolders. The BarotrollAtm (barometric pressure; temperature), DepthHOBO (water pressure; temperature), MantaRiver (specific conductivity; turbidity; pH; chlorophyll A; temperature), EXO (specific conductivity; pH; temperature), miniDOT (dissolved oxygen; temperature), and miniDOTManualChamber (dissolved oxygen; temperature) contain time-series data, plots, and summary files. The sample data subfolder consists of (1) total suspended solids (TSS) data; (2) dissolved organic carbon (DOC, measured as non-purgeable organic carbon, NPOC) data and averages; (3) total dissolved nitrogen (TN) data and averages; and (4) methods codes. All files are .csv, .pdf, .jpg, .jpeg, or .mov.

54 ENVIRONMENTAL SCIENCES↗

AmeriFlux FLUXNET-1F US-LS2 San Pedro River Lewis Springs Savanna

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-LS2 San Pedro River Lewis Springs Savanna. This is the FLUXNET version of the carbon flux data for the site US-LS2 San Pedro River Lewis Springs Savanna produced by applying the standard ONEFlux (1F) software. Site Description - A riparian savanna located on an old alluvial terrace about 0.5 km from the banks of the entrenched San Pedro River in southeastern Arizona USA. Site climate is semiarid with monsoonal (Jul-Sep) rainfall. The trees access groundwater (depth of ~7 m)from an alluvial aquifer recharged elsewhere. Therefore, site water balance is not closed and ET greatly exceeds precipitation. The perennial bunchgrasses use primarily rainfall. This groundwater-using ecosystem is far more ebulliant and productive than the upland vegetation around it (shrublands and grasslands) outside of the San Pedro River corridor.

Scott, Russell↗

AmeriFlux FLUXNET-1F US-LS1 San Pedro River Lewis Springs Sacaton Grassland

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-LS1 San Pedro River Lewis Springs Sacaton Grassland. This is the FLUXNET version of the carbon flux data for the site US-LS1 San Pedro River Lewis Springs Sacaton Grassland produced by applying the standard ONEFlux (1F) software. Site Description - This is a riparian grassland located along an old alluvial terrace along the banks of the entrenched San Pedro River in southeastern Arizona. Site climate is semiarid with monsoonal (Jul-Sep) rainfall. The grasses access groundwater (depth of 2-4 m)from an alluvial aquifer recharged elsewhere. Site water balance is not closed and ET greatly exceeds precipitation. The perennial bunchgrasses use both rainfall, groundwater and occasional flood water. This groundwater-using ecosystem is far more ebulliant and productive than the upland vegetation around it (shrublands and grasslands) outside of the San Pedro River corridor.

Scott, Russell [USDA-ARS]↗

Evaluating the Effects of the Kingston Fly Ash Release on Fish Reproduction: Spring 2009 – 2010 Studies

On December 22, 2008, a dike containing fly ash and bottom ash at the Tennessee Valley Authority's (TVA) Kingston Fossil Plant in East Tennessee failed and released a large quantity of ash into the adjacent Emory River. Ash deposits from the spill extended 4 miles upstream of the facility to Emory River mile 6 and downstream to Tennessee River mile 564 ({approx}8.5 miles downstream of the confluence of the Emory River with the Clinch River, and {approx}4 miles downstream of the confluence of the Clinch River with the Tennessee River). A byproduct of coal combustion, fly ash contains a variety of metals and other elements which, at sufficient concentrations and in specific forms, can be harmful to biological systems. The ecological effects of fly ash contamination on exposed fish populations depend on the magnitude and duration of exposure, with the most significant risk considered to come from elevated levels of certain metals in the ash, particularly selenium, on fish reproduction and fish early life stages (Lemly 1993; Besser and others 1996). The ovaries of adult female fish in a lake contaminated by coal ash were reported to have an increased frequency of atretic oocytes (dead or damaged immature eggs) and reductions in the overall numbers of developing oocytes (Sorensen 1988) associated with elevated body burdens of selenium. Larval fish exposed to selenium through maternal transfer of contaminants to developing eggs in either contaminated bodies of water (Lemly 1999) or in experimental laboratory exposures (Woock and others 1987, Jezierska and others 2009) have significantly increased incidences of developmental abnormalities. Contact of fertilized eggs and developing embryos to ash in water and sediments may also pose an additional risk to the early life stages of exposed fish populations through direct uptake of metals and other ash constituents (Jezierska and others 2009). The establishment and maintenance of fish populations is intimately associated with the ability of individuals within a population to reproduce. Reproduction is thus generally considered to be the most critical life function affected by environmental contamination. From a regulatory perspective, the issue of potential contaminant-related effects on fish reproduction from the Kingston fly ash spill has particular significance because the growth and propagation of fish and other aquatic life is a specific classified use of the affected river systems. To address the potential effects of fly ash from the Kingston spill on the reproductive health of exposed fish populations, ORNL has undertaken a series of studies in collaboration with TVA that include: (1) a combined field study of metal bioaccumulation in ovaries and other fish tissues (Adams and others 2012) and the reproductive condition of sentinel fish species in reaches of the Emory and Clinch Rivers affected by the fly ash spill (the current report); (2) laboratory tests of the potential toxicity of fly ash from the spill area on fish embryonic and larval development (Greeley and others 2012); (3) additional laboratory experimentation focused on the potential effects of long-term exposures to fly ash on fish survival and reproductive competence (unpublished); and (4) a combined field and laboratory study examining the in vitro developmental success of embryos and larvae obtained from fish exposed in vivo for over two years to fly ash in the Emory and Clinch Rivers (unpublished). The current report focuses on the reproductive condition of adult female fish in reaches of the Emory and Clinch Rivers influenced by the fly ash spill at the beginning of the spring 2009 breeding season - the first breeding season immediately following the fly ash release - and during the subsequent spring 2010 breeding season. Data generated from this and related reproductive/early life stage studies provide direct input to ecological risk assessment efforts and complement and support other phases of the overall biomonitoring program associated with the fly ash spill.

01 COAL, LIGNITE, AND PEAT↗

Compliance Monitoring of Yearling Chinook Salmon and Juvenile Steelhead Survival and Passage at Bonneville Dam, Spring 2011

The purpose of this compliance study was to estimate dam passage survival of yearling Chinook salmon and steelhead smolts at Bonneville Dam during spring 2011. Under the 2008 Federal Columbia River Power System Biological Opinion (BiOp), dam passage survival should be greater than or equal to 0.96 and estimated with a standard error (SE) less than or equal to 0.015. The study also estimated smolt passage survival from the forebay 2 km upstream of the dam to the tailrace 1 km below the dam, as well as the forebay residence time, tailrace egress, and spill passage efficiency, as required in the Columbia Basin Fish Accords. A virtual/paired-release design was used to estimate dam passage survival at Bonneville Dam. The approach included releases of acoustic-tagged smolts above Bonneville Dam that contributed to the formation of a virtual release at the face of the dam. A survival estimate from this release was adjusted by a paired release below Bonneville Dam. A total of 7692 yearling Chinook salmon and 7766 steelhead smolts were tagged and released during the study. The Juvenile Salmon Acoustic Telemetry System (JSATS) tag model number ATS-156dB, weighing 0.438 g in air, was used in this investigation. The high flows during spring 2011 disrupted planned 100 kcfs spill operations at Bonneville Dam. Therefore, dam passage survival was estimated for the early part of the study (i.e., 30 April–13 May) when spill was about 100 kcfs and for the entire season, which included much higher spill levels from 18–31 May 2011.

Skalski, J. R.↗

Final Scientific/Technical Report – DE-EE0002960 Recovery Act. Detachment faulting and Geothermal Resources - An Innovative Integrated Geological and Geophysical Investigation of Pearl Hot Spring, Nevada

The Pearl Host Spring Geothermal Project funded by the DoE Geothermal Program was a joint academic (KU/UT & OU) and industry collaboration (Sierra and Ram Power) to investigate structural controls and the importance of low-angle normal faults on geothermal fluid flow through a multifaceted geological, geophysical, and geochemical investigation in west-central Nevada. The study clearly showed that the geothermal resources in Clayton Valley are controlled by the interplay between low-angle normal faults and active deformation related to the Walker Lane. The study not only identified potentially feasible blind geothermal resource plays in eastern Clayton Valley, but also provide a transportable template for exploration in the area of west-central Nevada and other regional and actively-deforming releasing fault bends. The study showed that deep-seated low-angle normal faults likely act as crustal scale permeability boundaries and could play an important role in geothermal circulation and funneling geothermal fluid into active fault zones. Not unique to this study, active deformation is viewed as an important gradient to rejuvenated fracture permeability aiding the long-term viability of blind geothermal resources. The technical approach for Phase I included the following components, (1) Structural and geological analysis of Pearl Hot Spring Resource, (2) (U-Th)/He thermochronometry and geothermometry, (3) detailed gravity data and modeling (plus some magnetic and resistivity), (4) Reflection and Refraction Seismic (Active Source), (5) Integration with existing and new geological/geophysical data, and (6) 3-D Earth Model, combining all data in an innovative approach combining classic work with new geochemical and geophysical methodology to detect blind geothermal resources in a cost-effective fashion.

15 GEOTHERMAL ENERGY↗

Business Metrics for High-Performance Homes: A Colorado Springs Case Study

The building industry needs to understand how energy ratings can impact homebuilders. Of interest is how energy efficiency may or may not have a positive impact on homebuilders’ business success. Focusing on Colorado Springs, Colorado, as a case study, the U.S. Department of Energy’s Building America research team IBACOS suggests a win–win between a builder’s investment in energy efficiency and that builder’s ability to sell homes. Although this research did not ultimately determine why a correlation may exist, a builder’s investment in voluntary energy-efficiency programs correlated with that builder’s ability to survive the Great Recession of 2007 to 2009. This report explores the relationship between energy-efficiency ratings and the market performance of several builders in Colorado Springs.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Self-Assembling Biological Springs Force Transducers on the Micron Nanoscale

In this project, we are developing a new system for measuring forces within and between nanoscale biological molecules based on mesoscopic springs made of cholesterol helical ribbons. These ribbons self-assemble in a wide variety of complex fluids containing sterol, a mixture of surfactants and water [1] and have spring constants in the range from 0.5 to 500 pN/nm [2-4]. By the end of this project, we have demonstrated that the cholesterol helical ribbons can be used for measuring forces between biological objects and for mapping the strain fields in hydrogels.

59 BASIC BIOLOGICAL SCIENCES↗

Integrated characterization of CO 2 storage reservoirs on the Rock Springs Uplift combining geomechanics, geochemistry, and flow modeling

This project improves understanding of the effects CO 2 injection and storage on geomechanical, petrophysical, and other properties on two potential reservoirs, the Madison Limestone and Weber Sandstone, at the Rock Springs Uplift, southwest Wyoming. Rock physics studies, laboratory experiments, and computer simulations were employed. Two groups of rock samples were prepared, one aged with formation brine and the second aged with CO 2 -saturated formation brine and subsequently used for geomechanical, geochemical, and petrophysical testing. Rock physics studies provided a facies classification to discriminate among different lithologies and to investigate the feasibility of predicting petrophysical properties using seismic inversion. By applying a zone-wise regression relation established in this facies analysis, a 3D reservoir model was developed. It was determined that time-lapse seismic data are not feasible for monitoring CO 2 displacement at the Rock Springs Uplift or to mitigate leakage-risks situations because pressure and fluid saturation have small effects on elastic velocities and synthetic seismograms. The small variations that do occur are due to the low porosity of the sandstone and the high stiffness of the dolomite. In the Madison Limestone, mineral dissolution due to reaction with CO 2 -saturated brine was observed in highly permeable pathways while mineral precipitation happened in intergranular or micropores. Changes in pore size were quantified via Time-Domain Nuclear Magnetic Resonance transverse relaxation time (T 2 ) and diffusion coefficient distributions. As opposed to continuous injection of CO 2 -saturated brine, a subtle increase in porosity after static ‘soaking’ with CO 2 -saturated brine increases permeability due to the heterogeneity of changes in pore and pore throat sizes. Porosity-permeability relationships are fitted using a power-law function that can be adopted to model time-evolved porosity and permeability in a transport-limited CO 2 injection process. The effect of CO 2 -saturated brine on the linear elastic properties of Weber Sandstone and Madison Limestone cannot be generally concluded. Considering horizontal and vertical orientations and different confining pressures, no consistent relationship between stress (or strain) data and reaction with CO 2 -saturated brine was observed in the nonlinear plastic and post-failure regime. The change of elastic constants due to reaction with CO 2 -saturated brine is more significant in Madison Limestone than in Weber Sandstone; however, no consistent trend was observed. Reservoir simulations suggest that injectivity for Weber Sandstone is adversely impacted by low permeability. Changes in confining pressure do not impact injection rate and can be ignored while the effect of changes to pore pressure cannot. The effect of confining pressure and pore pressure on the size of the CO 2 plume in the Madison Limestone is negligible because of higher permeability. Geomechanical and petrophysical properties induced by CO 2 -brine-rock reactions were time-dependent. Simulations considered these time-dependent properties and indicate that injectivity, porosity distribution, pressure distribution and CO 2 saturation were affected.

58 GEOSCIENCES↗

Behavior, Distribution, and Passage Metrics of Juvenile Chinook Salmon Above and Below Lookout Point Dam, Fall 2016 and Spring 2017 (Final Report)

This report presents the results of a fish behavior, distribution, and passage study conducted by the Pacific Northwest National Laboratory (PNNL) for the U.S. Army Corps of Engineers Portland District (USACE) at Lookout Point Dam (or Lookout) during the fall of 2016 (October–December) and spring of 2017 (March–June). The goal of this study was to provide biologists, engineers, resource managers, and regional decision-makers with information about the behavior, distribution, and passage of juvenile Chinook salmon (Oncorhynchus tshawytscha) through the reservoir and tailwaters of Lookout. The results of this study are intended to inform decision-making about long-term structural and operational measures to help rebuild populations of Upper Willamette River spring Chinook salmon listed as threatened under the Endangered Species Act.

59 BASIC BIOLOGICAL SCIENCES↗