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At least 325 records · Page 18

Fast and efficient identification of anomalous galaxy spectra with neural density estimation

ABSTRACT Current large-scale astrophysical experiments produce unprecedented amounts of rich and diverse data. This creates a growing need for fast and flexible automated data inspection methods. Deep learning algorithms can capture and pick up subtle variations in rich data sets and are fast to apply once trained. Here, we study the applicability of an unsupervised and probabilistic deep learning framework, the probabilistic auto-encoder, to the detection of peculiar objects in galaxy spectra from the SDSS survey. Different to supervised algorithms, this algorithm is not trained to detect a specific feature or type of anomaly, instead it learns the complex and diverse distribution of galaxy spectra from training data and identifies outliers with respect to the learned distribution. We find that the algorithm assigns consistently lower probabilities (higher anomaly score) to spectra that exhibit unusual features. For example, the majority of outliers among quiescent galaxies are E+A galaxies, whose spectra combine features from old and young stellar population. Other identified outliers include LINERs, supernovae, and overlapping objects. Conditional modelling further allows us to incorporate additional information. Namely, we evaluate the probability of an object being anomalous given a certain spectral class, but other information such as metrics of data quality or estimated redshift could be incorporated as well. We make our code publicly available.

Böhm, Vanessa↗

First constraints from marked angular power spectra with Subaru Hyper Suprime-Cam Survey First-Year Data

We present the first application of marked power spectra to weak lensing data, using maps from the Subaru Hyper Suprime-Cam Year 1 (HSC-Y1) survey. Marked convergence fields, constructed by weighting the convergence field with non-linear functions of its smoothed version, are designed to encode higher-order information while remaining computationally tractable. Using simulations tailored to the HSC-Y1 data, we test three mark functions that up- or down-weight different density environments. Our results show that combining multiple types of marked auto and cross-spectra improves constraints on the clustering amplitude parameter S8≡σ8Ωm/0.3 by ≈43 per cent compared to standard two-point power spectra. When applied to the HSC-Y1 data, this translates into a constraint on S8=0.807±0.024⁠. We assess the sensitivity of the marked power spectra to systematics, including baryonic effects, intrinsic alignment, photometric redshifts, and multiplicative shear bias. We note that some of the additional information introduced by the marked field originates from scales smaller than the scale cut, and is partly Gaussian in nature. This does not invalidate our systematic tests. These results demonstrate the promise of marked statistics as a practical and powerful tool for extracting non-Gaussian information from weak lensing surveys.

Cowell, Jessica A. [Oxford U.; Tokyo U., IPMU] (OR↗

SPT-3G D1: CMB temperature and polarization power spectra and cosmology from 2019 and 2020 observations of the SPT-3G main field

Here, we present measurements of the temperature and E-mode polarization angular power spectra of the cosmic microwave background (CMB) from observations of 4% of the sky with SPT-3G, the current camera on the South Pole Telescope (SPT). The maps used in this analysis are the deepest used in a CMB TT / TE / EE analysis to date. The maps and resulting power spectra have been validated through blind and unblind tests. The measurements of the lensed EE and TE spectra are the most precise to date at ℓ = 1800 – 4000 and ℓ = 2200 – 4000 , respectively. Combining our TT / TE / EE spectra with previously published SPT-3G CMB lensing results, we find parameters for the standard Λ cold dark matter ( Λ CDM ) model consistent with Planck and ACT DR6 with comparable constraining power. We report a Hubble constant of H 0 = 66.66 ± 0.60 km s - 1 Mpc - 1 from SPT-3G alone, 6.2 σ away from local measurements from SH0ES. For the first time, combined ground-based ( SPT + ACT ) CMB primary and lensing data have reached Planck’s constraining power on some parameters, a milestone for CMB cosmology. The combination of these three CMB experiments yields the tightest CMB constraints to date, with H 0 = 67.19 ± 0.38 km s - 1 Mpc - 1 , and the amplitude of clustering σ 8 = 0.8137 ± 0.0037 . CMB data alone show no evidence for physics beyond Λ CDM , however, we observe a 2.8 σ difference in Λ CDM between CMB and baryon acoustic oscillation (BAO) results from DESI-DR2, which is relaxed in extended models. The combination of CMB and BAO yields 2 − 3 σ shifts from Λ CDM in the curvature of the Universe, the amplitude of CMB lensing, or the dark energy equation of state. It also drives mild preferences for models that address the Hubble tension through modified recombination or variations in the electron mass in a nonflat Universe. This work highlights the growing power of ground-based CMB experiments and lays a foundation for further cosmological analyses with SPT-3G.

Camphuis, Etienne [Sorbonne Université; CNRS; Inst↗

Primordial black holes and their mass spectra: The effects of mergers and accretion within stasis cosmologies

A variety of processes in the very early Universe can give rise to a population of primordial black holes (PBHs) with an extended mass spectrum. For certain mass spectra of this sort, it has been shown that the evaporation of these PBHs into radiation can drive the universe toward an epoch of cosmological stasis which can persist for a significant number of 𝑒-folds of cosmological expansion. However, in general, the initial mass spectrum which characterizes a population of PBHs at the time of production can subsequently be distorted by processes such as mergers and accretion. Here, in this paper, we examine the effects that these processes have on the spectra that lead to a PBH-induced stasis. Within such stasis models, we find that mergers have only a negligible effect on these spectra within the regime of interest for stasis. We likewise find that the effect of accretion is negligible in many cases of interest. However, we find that the effect of accretion on the PBH mass spectrum is non-negligible in situations in which this spectrum is particularly broad. In such situations, the stasis epoch is abridged or, in extreme cases, does not occur at all. Thus accretion plays a nontrivial role in constraining the emergence of stasis within scenarios which lead to extended PBH mass spectra.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Joint Determination of Reactor Antineutrino Spectra from U 235 and Pu 239 Fission by Daya Bay and PROSPECT

A joint determination of the reactor antineutrino spectra resulting from the fission of 235U and 239Pu has been carried out by the Daya Bay and PROSPECT collaborations. This Letter reports the level of consistency of 235U spectrum measurements from the two experiments and presents new results from a joint analysis of both data sets. The measurements are found to be consistent. The combined analysis reduces the degeneracy between the dominant 235U and 239Pu isotopes and improves the uncertainty of the 235U spectral shape to about 3%. The 235U and 239Pu antineutrino energy spectra are unfolded from the jointly deconvolved reactor spectra using the Wiener-SVD unfolding method, providing a data-based reference for other reactor antineutrino experiments and other applications. This is the first measurement of the 235U and 239Pu spectra based on the combination of experiments at low- and highly enriched uranium reactors.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

CuXASNet: Rapid and accurate prediction of copper L-edge x-ray absorption spectra using machine learning

In this work, we have developed CuXASNet, a dense neural network that predicts simulated Cu -edge x-ray absorption spectra (XAS) from atomic structures. Featurization of the Cu local environment is performed using a component of M3GNet, a graph neural network developed for predicting the potential energy surface. CuXASNet is trained on simulated spectra from FEFF9 at the multiple scattering level of theory, and can predict the and edges for Cu sites to quantitative accuracy. To validate our approach, we compare 14 experimental spectra extracted from the literature with the predictions of CuXASNet. The agreement of CuXASNet with experiments is shown by an average mean absolute error of 0.125 and an average Spearman's correlation coefficient of 0.891, which is comparable to FEFF9's values of 0.131 and 0.898 for the same metrics. As such, CuXASNet can rapidly predict a large number of -edge XAS spectra at the same accuracy as FEFF9 simulations. This can be used as a drop-in replacement for multiple scattering codes for fast screening of candidate atomic structure models of a measured system. This model establishes a general framework for Cu XAS prediction, and can be extended to more computationally expensive levels of theory and to other transition metal edges.

36 MATERIALS SCIENCE↗

Transfer Learning of High-Fidelity Opacity Spectra in Autoencoders and Surrogate Models

Simulations of high energy density physics are expensive, largely in part for the need to produce nonlocal thermodynamic equilibrium opacities. High-fidelity spectra may reveal new physics in the simulations not seen with low-fidelity spectra, but the cost of these simulations also scales with the level of fidelity of the opacities being used. Neural networks are capable of reproducing these spectra, but neural networks need data to train them, which limits the level of fidelity of the training data. Here this article demonstrates that it is possible to reproduce high-fidelity spectra with median errors in the realm of 3%–4% using as few as 50 samples of high-fidelity Krypton data by performing transfer learning on a neural network trained on many times more low-fidelity data.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Database of low‐temperature absorption and fluorescence spectra of native photosynthetic tetrapyrrole macrocycles

Low-temperature (77 K) absorption and fluorescence spectra of 12 naturally occurring photosynthetic tetrapyrrole macrocycles have been recorded in a frozen glass (2-methyltetrahydrofuran). The compounds encompass distinct chromophore classes: porphyrin, chlorophyll c 2 ; chlorin, chlorophylls a, b, d, f and bacteriochlorophylls c, d, e, f; and bacteriochlorin, bacteriochlorophylls a, b, g. The spectra are compared with those of the same pigment in liquid solution (predominantly 2-methyltetrahydrofuran) at room temperature (293 K). The measured Stokes shifts at 77 K across the 12 macrocycles range from ~30 to 300 cm −1 . The spectral data in digital form are made available as part of the PhotochemCAD databases. Literature searches have revealed extensive published data for Chl a (often in biological matrices) but at best rather limited data for less common macrocycles. The availability of a systematic collection of curated spectral data collected at low temperature should be useful for a variety of assessments, including reconstruction of absorption spectra of (bacterio)chlorophyll-containing protein complexes, vibrational analysis of absorption and fluorescence spectra, and calculations where knowledge of energy levels is important.

Niedzwiedzki, Dariusz M. [Washington University in↗

Aluminum hydroxide, bayerite, boehmite, and gibbsite ToF-SIMS spectra in the negative ion mode. I

We report time-of-flight secondary ion mass spectrometry (ToF-SIMS) was performed for boehmite (AOH-60) and its potential products of oxidation including pseudo-boehmite (AOH-180), α- and γ-Al 2 O 3 , and α- and γ-Al(OH) 3 . Since boehmite is often incorporated on cladding materials to prevent corrosion, surface analysis techniques are performed to determine the amount of oxidation present. This ToF-SIMS spectral library is of significance because it includes boehmite and its potential oxidation products (i.e., aluminum oxide and hydroxide), which can be used to compare to spectra obtained for real-world samples containing boehmite. Furthermore, ToF-SIMS is often used as a complementary technique to x-ray photoelectron spectroscopy due to its surface sensitivity and ability to compare spectra via a multivariate analysis, therefore establishing that the molecular signatures of boehmite and relevant compounds are essential for peak identification. The SIMS spectra shown are acquired from commercially available powders, which were deposited onto a silicon wafer substrate via liquid slurry drop casting. This library of SIMS mass spectra will serve as a comparison of boehmite [γ-AlO(OH)], pseudo-boehmite [AlOOH∙nH 2 O], α- and γ-Al 2 O 3 aluminum oxide, and α- and γ-Al 2 O 3 aluminum hydroxide in the negative ion mode, which compliments those reported in the positive ion mode.

36 MATERIALS SCIENCE↗

Aluminum hydroxide, bayerite, boehmite, and gibbsite ToF-SIMS spectra in the positive ion mode. II

We report time-of-flight secondary ion mass spectrometry (ToF-SIMS) was performed for boehmite (AOH-60) and its potential products of oxidation including pseudo-boehmite (AOH-180), α- and γ-Al 2 O 3 , and α- and γ-Al(OH) 3 . Since boehmite often forms on the cladding materials to prevent corrosion, surface analysis techniques are performed to determine the amount of oxidation present. This ToF-SIMS spectral library is of significance because it includes boehmite and its potential oxidation products (i.e., aluminum oxide and hydroxide), which can be used to compare to spectra obtained for real-world samples containing boehmite. Furthermore, ToF-SIMS is often used as a complementary technique to x-ray photoelectron spectroscopy (XPS) due to its surface sensitivity and ability to compare spectra via multivariate analysis, therefore establishing the molecular signatures of boehmite and relevant compounds are essential for peak identification. The SIMS spectra shown are acquired from commercially available powders, which were deposited onto a Si wafer substrate via liquid slurry drop casting. This library of SIMS mass spectra will serve as a comparison of boehmite [γ-AlO(OH)], pseudo-boehmite [AlOOH∙nH 2 O], α- and γ-Al 2 O 3 aluminum oxide, and α- and γ-Al 2 O 3 aluminum hydroxide in the positive ion mode, which compliments those reported in the negative ion mode (Part 1).

36 MATERIALS SCIENCE↗

Systematic investigation of the particle spectra in heavy-ion collisions at the Large Hadron Collider

We investigate the charged particle spectra produced in the heavy-ion collisions at nine centralities from different systems, i.e. Pb+Pb at √ s NN = 2.76 TeV and 5.02 TeV as well as Xe+Xe at √ s NN = 5.44 TeV, at Large Hadron Collider (LHC) using one empirical formula inspired by the stationary solution of the Fokker-Planck equation, dubbed as the generalized Fokker-Planck solution (GFPS). Our results show that the GFPS can reproduce the experimental particle spectrum up to transverse momentum pT about 45 GeV/c with the maximum discrepancy 30% covering 10 orders of magnitude. Here, the discrepancy between the data and the results from the GFPS decreases to 15% when the maximum of the charged particle transverse momentum is cut to 20 GeV/c. We confirmed that the Tsallis distribution derived from the non-extensive statistics, which can reproduce the particle spectra produced in small collision systems, such as p+p, up to few hundreds GeV/c, can only apply to systematically study the particle spectra up to 8 GeV/c in A+A collisions at LHC, as pointed out in the study of identified particle spectra in Pb+Pb collisions at √ s NN = 2.76 TeV. A brief discussion on GFPS is also given.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

An Interactive Spectral Analysis Tool for Chemical Identification and Quantification of Gas-Phase Species in Complex Spectra

A spectral analysis tool has been developed to interactively identify and quantify individual gas-phase species from complex infrared absorbance spectra obtained from laboratory or field data. The SpecQuant program has an intuitive graphical interface that accommodates both reference and experimental data with varying resolution and instrumental lineshape, as well as algorithms to readily align the wavenumber axis of a sample spectrum with the raster of a reference spectrum. Using a classical least squares model in conjunction with reference spectra such as those from the Pacific Northwest National Laboratory (PNNL) gas-phase infrared database or simulated spectra derived from the HITRAN line-by-line database, the mixing ratio of each identified species is determined along with its associated estimation error. After correcting the wavelength and intensity of the field data, SpecQuant displays the calculated mixing ratio versus the experimental data for each analyte along with the residual spectrum with any or all analyte fits subtracted for visual inspection of the fit and residuals. The software performance for multianalyte quantification was demonstrated using moderate resolution (0.5 cm –1 ) infrared spectra that were collected during the time-resolved infrared photolysis of methyl iodide.

Thompson, Christopher J.↗

Moving toward automated µFTIR spectra matching for microplastic identification: addressing false identifications and improving accuracy

Abstract Infrared spectroscopy is a widely used tool for studying microplastics and identifying microparticles. Researchers rely on spectral libraries to differentiate between synthetic and natural materials. Unfortunately, spectral library matching is not perfect, and best practices require researchers to use time consuming, manual peak matching to assess spectral matches. Moving toward automated matching requires increased confidence in the matching process. Using spectra matching software may increase the efficiency of particle identification, however some matching strategies may confuse natural materials such as cotton, silk, and plant matter with common classes of synthetics such as polyesters and polyamides. In this experiment, we prepared 22 pristine sample materials from natural and synthetic sources and measured micro-Fourier transform infrared (µFTIR) spectra in transmission mode for each sample using a Thermo Nicolet iN10 MX instrument. The collected spectra were then input into two spectral library matching systems (Omnic Picta and Open Specy), using a total of five identification routines. Next, we placed a subset of four pristine microplastic materials in a biologically active river system for two weeks to simulate environmental samples. These simulated environmental samples were processed using 10% hydrogen peroxide for 24 h to remove organic contamination and then identified using the strongest performing library. We found that libraries with fewer sample spectra produced lower correlation matches and that using derivative correction greatly reduced the number of inaccuracies in identifying materials as either natural or synthetic. We also found that environmental fouling reduced the correlation value of library matches when compared to pristine particles, however the effect was not consistent across the four materials tested. Overall, we found that the accuracy of automated library matching in the tested systems and processing routines varied from 64.1 to 98.0% for distinguishing between natural and synthetic materials, and that a high Hit Quality Index (HQI) did not always correlate with accuracy. These results are important for the microplastic field, demonstrating a need to rigorously test spectral libraries and processing routines with known materials to ensure identification accuracy.

Kozloski, Rachel↗

Time-stretch spectroscopy for fast infrared absorption spectra of acetylene and hydroxyl radicals during combustion

We have developed a diagnostic that uses time-domain spectroscopy to measure transient infrared absorption spectra in gases. Using a time-stretch Fourier transform approach, we can determine pressure, temperature, and gas concentrations with sub-microsecond time resolution for over two milliseconds. We demonstrate high-resolution (0.015 nm), time-resolved spectral measurements in an acetylene-oxygen gas mixture undergoing combustion. Within a 5 µs period during the reaction, the acetylene line intensities decrease substantially, and new spectra appear that are consistent with the hydroxyl (OH) radical, a common by-product in the combustion, deflagration, and detonation of fuels and explosives. Post-reaction pressures and temperatures were estimated from the OH spectra. The technique measures spectra from 1520 to 1620 nm using fiber optics, photodetectors, and digitizers. No cameras or spectrometers are required.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Canopy spectra, Feb2017, PA-SLZ: Panama

Canopy spectra of sunlit canopy of Guarea kunthiana, Brosimum utile, Terminalia amazonia (TERMAM), Vochysia ferruginea (VOCHFE), Miconia borealis (MICOBO) and Guatteria dumetorum (GUATDU) species from the Smithsonian Tropical Research Institute (STRI) canopy crane site in the San Lorenzo National Park, Republic of Panama (PA-SLZ: Bosque Protector San Lorenzo). Canopy spectra were measured at 1:20 – 2 pm on 22 February 2017, using a SVC spectroradiometer. This data package includes the raw SVC data (*.sig), processed data of individual spectra, and processed spectra averaged over the canopy of each of the six trees measured (*.csv). The package also includes photographs of the canopy spectral targets, metadata and the instrument manual. This data was collected as part of the 2017 Brookhaven National Laboratory – Smithsonian Tropical Research Institute leaf traits by age campaign.

54 ENVIRONMENTAL SCIENCES↗

Leaf demography spectra, February 2017, PA-SLZ: Panama

This dataset contains leaf reflectance spectra of sunlit canopy leaves from trees at the San Lorenzo Protected Area (PA-SLZ), Panama. Spectra were measured with a full-spectrum (350 -2500 nm) spectroradiometer with a leaf clip attachment. Leaves previously documented in a demography survey were targeted, and each leaf spectrum is paired with species identification, relative leaf position on each branch and estimated leaf age in days. Leaves were measured from the following species: Apeiba membranacea, Carapa guianensis, Guatteria dumetorum, Miconia borealis, Tachigali versicolor, Terminalia amazonia, Tocoyena pittieri and Vochysia ferruginea Unprocessed spectral data are included as SVC *.sig files, and metadata, including sample details, are presented in *.xlsx files. Leaf reflectance spectra of sunlit canopy leaves from trees at the San Lorenzo Protected Area (PA-SLZ), Panama. Spectra were measured with a full-spectrum (350 -2500 nm) spectroradiometer with a leaf clip attachment. Leaves previously documented in a demography survey were targeted, and each leaf spectrum is paired with species identification, relative leaf position on each branch and estimated leaf age in days. Leaves were measured from the following species: Apeiba membranacea, Carapa guianensis, Guatteria dumetorum, Miconia borealis, Tachigali versicolor, Terminalia amazonia, Tocoyena pittieri and Vochysia ferruginea Unprocessed spectral data are included as SVC *.sig files, and metadata, including sample details, are presented in *.xlsx files.

54 ENVIRONMENTAL SCIENCES↗

Comparison of Modeled to Measured Spectra using MCNP and GADRAS to Benchmark and Contrast Modeling Limitations

The desire to improve nuclear material detection through portal monitors and other low resolution detectors has led to interest in benchmarking the performance of radiation transport codes. These codes can be used to generate a variety and quantity of spectra that may be cost prohibitive to measure directly. Particular characteristics of typical detection scenarios were isolated to compare the performance of radiation transport codes to laboratory experiments. These benchmark experiments were performed to validate simulations in a number of key areas. These experiments included high areal density configurations in both one- and three-dimensional configurations. In addition, off-angle measurements were conducted to investigate the impact of detector response assumptions on complex geometries, for example where an unknown source is not physically collocated with an apparent hot spot. Furthermore, by examining both simple shielding and backscatter configurations, isolation of the scatter emanating from the object and environmental background scatter contributions to the spectra could be elucidated. A series of experiments were performed in which the order of shielding layers and the thickness were evaluated to examine the ability of the simulations to address these variables. Experiments with increasing thickness of polyethylene around a neutron source also allows for examinations of the ability of the transport simulations to properly model n,γ reactions. Finally, depleted uranium (DU) measurements have more complicated spectra than the cobalt-60 and consequently allow for investigations into the ability of transport simulations to model self-shielding. In each case, the results of the experiments were compared to MCNP simulations to judge the performance of the code, as was done previously with GADRAS 18.7.9 simulations [7]. All of the benchmark measurements were taken with a liquid nitrogen cooled 140% high purity germanium (HPGe) detector with a bismuth collimator that had the front tin filter removed. The measurement location and detector configuration were subsequently used for all experimental configurations. The remainder of this report details the experimental measurements, Section 2 and the MCNP model, Section 3. Comparisons between the experimental results and MCNP-generated spectra are performed, Section 4. Section 5 compares the results obtained with MCNP with the previously reported results obtained with GADRAS [2]. Finally, Section 6 presents the conclusions.

61 RADIATION PROTECTION AND DOSIMETRY↗

Two-dimensional heteronuclear single quantum coherence (HSQC) NMR spectra of lignin isolated from field grown transgenic poplar

Here we present a curated dataset of a series of two-dimensional heteronuclear single quantum coherence (HSQC) nuclear magnetic resonance (NMR) spectra of lignin isolated from a field grown transgenic poplar engineered with a monolignol 4-O-methyltransferase (MOMT4). The poplar was collected from a 2-year-old rotation trees within a three-year field trial experiment. The poplar was Soxhlet-extracted with toluene/ethanol and the extractives-free poplar was then ball-milled in a Retsch PM100 planetary ball mill using a porcelain jar with ceramic balls at 600 rpm for 2 h (in 5 min on and 5 min off cycles to avoid excessive sample heating). The ball-milled materials were then subjected to enzymatic hydrolysis for 48 h followed by centrifugation and washing with deionized water. The solid residue was extracted twice with 96:4 (v/v) 1,4-dioxane/water mixture at room temperature overnight. The extracts were combined, rotary evaporated, and freeze-dried to recover the lignin. The dry lignin samples were dissolved in deuterated dimethyl sulfoxide for NMR experiments. 13C–1H HSQC experiments were performed in a Bruker Avance III HD 500 MHz NMR spectrometer operating at a frequency of 125.12 MHz for the 13C nucleus using a standard Bruker pulse sequence (hsqcetgpsisp2.2) on a Prodigy platform cryoprobe. The NMR spectra were acquired under the following acquisition conditions: 220 ppm spectral width in F1 (13C) dimension with 256 data points and 12 ppm spectral width in F2 (1H) dimension with 1024 data points, a 90° pulse, a one bond C–H coupling constant of 145 Hz, a 1.0 s pulse delay, and 64 scans. All the data was processed using the Bruker’s TopSpin 3.6 software. The NMR spectra provides structural characteristics information about lignin in field grown transgenic MOMT4 poplar. Additional meta data is embedded in the raw spectra figures.

Lignin structure, HSQC, poplar, field trial, MOMT4↗