Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “INTERMEDIATE STATE”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 325 records · Page 18
All sourcesNASA NTRSDOE OSTI
DOE OSTI2010

On the question of connections between high-K and low-K states in {sup 180}Ta and {sup 176}Lu

Possible connections between the high- and low-K states in the odd-odd isotopes {sup 176}Lu and {sup 180}Ta are discussed in the context of photoactivation resonances, and the implications for excitations in a stellar environment. Recent spectroscopic studies using (d, 2n) reactions provide limits on the {gamma}-ray branches expected if proposed intermediate states are correct in {sup 180}Ta and {sup 176}Lu, while Deep-inelastic measurements have observed a definitive set of connections in {sup 176}Lu.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2012

Measurements of the polarization observables I^S and I^c for {gamma}p-->p{pi}^+{pi}^- using the CLAS spectrometer

Constituent Quark Models predict an excited baryon spectrum much richer in resonances than that which has been observed experimentally, the so-called missing resonance problem. Evidence for the production of these short-lived states may come about through measurements of quantities called polarization observables. These observables occur when the constraint of polarization is imposed on the reactions and are highly sensitive to resonance production. The expected sequential decay of these N* resonances via {pi}{Delta} and N{Delta} intermediate states makes the double pion final state an attractive final state to study to reveal these missing resonances. In recent years, both single- and double-polarization experiments have been carried out as part of the N* program at Jefferson Lab in Newport News, Virginia with the goal of resolving this missing resonance problem. One such polarized photoproduction experiment used linearly polarized photons incident on an unpolarized LH{sub 2} target. The analysis of {gamma}p {yields} {pi}{sup +}{pi}{sup -} reactions found in these polarized photoproduction data using the power of a kinematic fitter results in highly accurate measurements of these observables. The analysis of this p{pi}{sup +}{pi}{sup -} final state and the extraction of two such observables, I{sup S} and I{sup c}, will be discussed.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2023

Spin selective charge recombination in chiral donor-bridge-acceptor triads

In this paper, we outline a physically motivated framework for describing spin-selective recombination processes in chiral systems, from which we derive spin-selective reaction operators for recombination reactions of donor–bridge–acceptor molecules, where the electron transfer is mediated by chirality and spin–orbit coupling. In general, the recombination process is selective only for spin-coherence between singlet and triplet states, and it is not, in general, selective for spin polarization. We find that spin polarization selectivity only arises in hopping-mediated electron transfer. We describe how this effective spin-polarization selectivity is a consequence of spin-polarization generated transiently in the intermediate state. Furthermore, the recombination process also augments the coherent spin dynamics of the charge separated state, which is found to have a significant effect on the recombination dynamics and to destroy any long-lived spin polarization. Although we only consider a simple donor–bridge–acceptor system, the framework we present here can be straightforwardly extended to describe spin-selective recombination processes in more complex systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2010

Rovibronically selected and resolved two-color laser photoionization and photoelectron study of nickel carbide cation

We have performed a two-color laser photoionization and photoelectron study of nickel carbide (NiC) and its cation (NiC{sup +}). By preparing NiC in a single rovibronic level of an intermediate vibronic state via visible laser excitation prior to ultraviolet laser photoionization, we have measured the photoionization efficiency spectrum of NiC near its ionization threshold, covering the formation of NiC{sup +}(X {sup 2}{Sigma}{sup +};v{sup +}=0-3). We have also obtained well-resolved rotational transitions for the v{sup +}=0 and 1 vibrational bands of the NiC{sup +}(X {sup 2}{Sigma}{sup +}) ground state. The assignment of rotational transitions observed between the neutral NiC intermediate state and the NiC{sup +} ion ground state has allowed the direct determination of a highly precise value for the ionization energy of NiC, IE(NiC)=67 525.1{+-}0.5 cm{sup -1} (8.372 05{+-}0.000 06 eV). This experiment also provides reliable values for the vibrational spacing [{Delta}G(1/2)=859.5{+-}0.5 cm{sup -1}], rotational constants (B{sub e}{sup +}=0.6395{+-}0.0018 cm{sup -1} and {alpha}{sub e}{sup +}=0.0097{+-}0.0009 cm{sup -1}), and equilibrium bond distance (r{sub e}{sup +}=1.628 A) for the NiC{sup +}(X {sup 2}{Sigma}{sup +}) ground state. The experimental results presented here are valuable for benchmarking the development of more reliable ab initio quantum computation procedures for energetic and spectroscopic calculations of transition metal-containing molecules.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2017

Revealing the electronic structure of LiC 6 by soft X-ray spectroscopy

The electronic structure of LiC 6 has been investigated in this paper by soft X-ray absorption and emission spectroscopies. The results reveal that upon full lithiation of graphite, the Li 2s electrons are transferred into the carbon π* states in a near rigid-band behavior, resulting in the increased density of states near E F and the shift of σ* states to lower energies. Finally, in addition, the resonant inelastic X-ray scattering spectra of LiC 6 do not show strong dispersive features as that of graphite, indicating that the crystal momentum is not conserved during the scattering process due to the delocalization of electrons in the intermediate state.

36 MATERIALS SCIENCE↗
DOE OSTI2012

In situ spectroscopy on intact Leptospirillum ferrooxidans reveals that reduced cytochrome 579 is an obligatory intermediate in the aerobic iron respiratory chain

Electron transfer reactions among colored cytochromes in intact bacterial cells were monitored using an integrating cavity absorption meter that permitted the acquisition of accurate absorbance data in suspensions of cells that scatter light.The aerobic iron respiratory chain of Leptospirillum ferrooxidans was dominated by the redox status of an abundant cellular cytochrome that had an absorbance peak at 579 nm in the reduced state. Intracellular cytochrome 579 was reduced within the time that it took to mix a suspension of the bacteria with soluble ferrous iron at pH 1.7. Steady state turnover experiments were conducted where the initial concentrations of ferrous iron were less than or equal to that of the oxygen concentration. Under these conditions, the initial absorbance spectrum of the bacterium observed under air-oxidized conditions was always regenerated from that of the bacterium observed in the presence of Fe(II). The kinetics of aerobic respiration on soluble iron by intact L. ferrooxidans conformed to the Michaelis–Menten formalism, where the reduced intracellular cytochrome 579 represented the Michaelis complex whose subsequent oxidation appeared to be the rate-limiting step in the overall aerobic respiratory process. The velocity of formation of ferric iron at any time point was directly proportional to the concentration of the reduced cytochrome 579. Further, the integral over time of the concentration of the reduced cytochrome was directly proportional to the total concentration of ferrous iron in each reaction mixture.These kinetic data obtained using whole cells were consistent with the hypothesis that reduced cytochrome 579 is an obligatory steady state intermediate in the iron respiratory chain of this bacterium. The capability of conducting visible spectroscopy in suspensions of intact cells comprises a powerful post-reductionist means to study cellular respiration in situ under physiological conditions for the organism.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Observation of Fundamental Mechanisms in Compression-Induced Phase Transformations Using Ultrafast X-ray Diffraction

As theoretically hypothesized for several decades in group IV transition metals, we have discovered a dynamically stabilized body-centered cubic (bcc) intermediate state in Zr under uniaxial loading at sub-nanosecond timescales. Under ultrafast shock wave compression, rather than the transformation from α-Zr to the more disordered hex-3 equilibrium ω-Zr phase, in its place we find the formation of a previously unobserved nonequilibrium bcc metastable intermediate. We probe the compression-induced phase transition pathway in zirconium using time-resolved sub-picosecond x-ray diffraction analysis at the Linac Coherent Light Source. We also present molecular dynamics simulations using a potential derived from first-principles methods which independently predict this intermediate phase under ultrafast shock conditions. In contrast with experiments on longer timescale (> 10 ns) where the phase diagram alone is an adequate predictor of the crystalline structure of a material, our recent study highlights the importance of metastability and time dependence in the kinetics of phase transformations.

36 MATERIALS SCIENCE↗
DOE OSTI2020

Untangling the sequence of events during the S 2 → S 3 transition in photosystem II and implications for the water oxidation mechanism

In oxygenic photosynthesis, light-driven oxidation of water to molecular oxygen is carried out by the oxygen-evolving complex (OEC) in photosystem II (PS II). Recently, we reported the room-temperature structures of PS II in the four (semi)stable S-states, S 1 , S 2 , S 3 , and S 0 , showing that a water molecule is inserted during the S 2 → S 3 transition, as a new bridging O(H)-ligand between Mn1 and Ca. To understand the sequence of events leading to the formation of this last stable intermediate state before O 2 formation, we recorded diffraction and Mn X-ray emission spectroscopy (XES) data at several time points during the S 2 → S 3 transition. At the electron acceptor site, changes due to the two-electron redox chemistry at the quinones, Q A and Q B , are observed. At the donor site, tyrosine Y Z and His190 H-bonded to it move by 50 µs after the second flash, and Glu189 moves away from Ca. This is followed by Mn1 and Mn4 moving apart, and the insertion of O X (H) at the open coordination site of Mn1. This water, possibly a ligand of Ca, could be supplied via a “water wheel”-like arrangement of five waters next to the OEC that is connected by a large channel to the bulk solvent. XES spectra show that Mn oxidation (τ of ∼350 µs) during the S 2 → S 3 transition mirrors the appearance of O X electron density. This indicates that the oxidation state change and the insertion of water as a bridging atom between Mn1 and Ca are highly correlated.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Resonant control of photoelectron directionality by interfering one- and two-photon pathways

Coherent control of interfering one- and two-photon processes has for decades been the subject of research to achieve the redirection of photocurrent. The present study develops two-pathway coherent control of ground-state helium atom above-threshold photoionization for energies up to the N = 2 threshold, based on a multichannel quantum defect and R-matrix calculation. Three parameters are controlled in our treatment: the optical interference phase ΔΦ, the reduced electric field strength χ = $\mathscr{E}^2_ω$$\mathscr{E}_{2ω}$, and the final state energy ε. A small energy change near a resonance is shown to flip the emission direction of photoelectrons with high efficiency, through an example where 90% of photoelectrons whose energy is near the 2p 2 1 S e resonance flip their emission direction. However, the large fraction of photoelectrons ionized at the intermediate state energy, which are not influenced by the optical control, make this control scheme challenging to realize experimentally.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

Constrained or unconstrained? Neural-network-based equation discovery from data

Throughout many fields, practitioners often rely on differential equations to model systems. Yet, for many applications, the theoretical derivation of such equations and/or the accurate resolution of their solutions may be intractable. Instead, recently developed methods, including those based on parameter estimation, operator subset selection, and neural networks, allow for the data-driven discovery of both ordinary and partial differential equations (PDEs), on a spectrum of interpretability. The success of these strategies is often contingent upon the correct identification of representative equations from noisy observations of state variables and, as importantly and intertwined with that, the mathematical strategies utilized to enforce those equations. Specifically, the latter has been commonly addressed via unconstrained optimization strategies. Representing the PDE as a neural network, we propose to discover the PDE (or the associated operator) by solving a constrained optimization problem and using an intermediate state representation similar to a physics-informed neural network (PINN). The objective function of this constrained optimization problem promotes matching the data, while the constraints require that the discovered PDE is satisfied at a number of spatial collocation points. We present a penalty method and a widely used trust-region barrier method to solve this constrained optimization problem, and we compare these methods on numerical examples. Our results on several example problems demonstrate that the latter constrained method outperforms the penalty method, particularly for higher noise levels or fewer collocation points. This work motivates further exploration into using sophisticated constrained optimization methods in scientific machine learning, as opposed to their commonly used, penalty-method or unconstrained counterparts. For both of these methods, we solve these discovered neural network PDEs with classical methods, such as finite difference methods, as opposed to PINNs-type methods relying on automatic differentiation. Here, we briefly highlight how simultaneously fitting the data while discovering the PDE improves the robustness to noise and other small, yet crucial, implementation details.

Data-driven discovery↗
DOE OSTI2015

Crossover behavior of the thermal conductance and Kramers’ transition rate theory

Kramers’ theory frames chemical reaction rates in solution as reactants overcoming a barrier in the presence of friction and noise. For weak coupling to the solution, the reaction rate is limited by the rate at which the solution can restore equilibrium after a subset of reactants have surmounted the barrier to become products. For strong coupling, there are always sufficiently energetic reactants. However, the solution returns many of the intermediate states back to the reactants before the product fully forms. Here, we demonstrate that the thermal conductance displays an analogous physical response to the friction and noise that drive the heat current through a material or structure. A crossover behavior emerges where the thermal reservoirs dominate the conductance at the extremes and only in the intermediate region are the intrinsic properties of the lattice manifest. Finally, not only does this shed new light on Kramers’ classic turnover problem, this result is significant for the design of devices for thermal management and other applications, as well as the proper simulation of transport at the nanoscale.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2019

Local atomic structure and lattice defect analysis in heavily Co-doped ZnS thin films using X-ray absorption fine structure spectroscopy

Iin this work, X-ray absorption fine structure (XAFS) spectroscopy was used to address both the local atomic structure and the local electronic structure around Zn, Co, and S in Co-doped ZnS thin films. X-ray absorption near-edge spectroscopy (XANES) revealed changes in the strong pre-edge feature of the S K-edge spectra that depend on the Co concentration and are related to atomic bound-state transitions through hybridization between $3d$ transition metal and $sp$ host semiconductor electronic states. These changes reveal intrinsic effects, such as S vacancies and dopant effects. From the Co K-edge XANES spectra, substitution of Co 2+ into ZnS is observed. The local atomic structure around the dopant, obtained by XAFS spectroscopy, indicates a reduction of the Co–S bond length. Optical analysis shows deep absorption centers or intermediate states in the bandgap, ascribed to $d$-$d$ transitions in the Co atoms that modify the electronic band structure and cause a decrease in the bandgap as a function of Co concentration. This work provides direct evidence of dopant effects in heavily Co-doped ZnS, including bond distances and Debye-Waller factors, providing key elements to generate a realistic atomic structural model, which is crucial to understand the observed electronic properties of this material.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

Successive magnetic orderings in the Ising spin chain magnet DyNi 5 Ge 3

In this report, we investigated a new rare-earth-based one-dimensional Ising spin chain magnet DyNi 5 Ge 3 by means of magnetization, specific heat, and powder neutron diffraction measurements. Due to the crystalline electrical field splitting, the magnetic Dy ions share an Ising-like ground doublet state. Owning to the local point symmetry, these Ising moments form into two canted magnetic sublattices, which were further confirmed by the angle-dependent magnetization measurement. In zero fields, two successive antiferromagnetic phase transitions were found at temperatures T N1 =6K and T N2 =5K, respectively. Only part of the moments are statically ordered in this intermediate state between T N1 and T N2 . Powder neutron diffraction experiments at different temperatures were performed as well. Further, an incommensurate magnetic propagation vector of k m =(0.5,0.4,0.5) was identified. The refined spin configurations through the irreducible representation analysis confirmed that these Ising spins are canted in the crystal ab plane.

36 MATERIALS SCIENCE↗
DOE OSTI2015

X-ray Radiation Induces Deprotonation of the Bilin Chromophore in Crystalline D. Radiodurans Phytochrome

We report that in the red light-absorbing (Pr) state, the bilin chromophore of the Deinococcus radiodurans proteobacterial phytochrome (DrBphP) is hypersensitive to X-ray photons used in typical synchrotron X-ray protein crystallography experiments. This causes the otherwise fully protonated chromophore to deprotonate without additional major structural changes. Furthermore, these results have major implications for our understanding of the structural and chemical characteristics of the resting and intermediate states of phytochromes and other photoreceptor proteins.

Li, Feifei↗
DOE OSTI2012

Strangeness electroproduction on the nucleon at CLAS

High-precision measurements of strange particle production from both proton and neutron targets are a core part of the physics program with the CLAS spectrometer in Hall B at Jefferson Laboratory. Measurements have been carried out at beam energies up to 6 GeV in experiments with polarized beams and polarized targets. This talk will focus on the electroproduction measurements that have been completed, which include cross sections and hyperon polarization observables for K{sup +}Y (Y = {Lambda}{Sigma}{sup 0}) final states over a broad kinematic range in momentum transfer Q{sup 2} and invariant energy W, while spanning nearly the full kaon center-of-mass angular range. These data in the strangeness sector are necessary to better understand the different production mechanisms for {Lambda} and {Sigma} hyperons and to disentangle the different resonant and non-resonant amplitudes in the intermediate state. The usefulness of the CLAS electroproduction data as part of a coupled-channel model fit will be discussed as well as an outlook of this program for the future.

43 PARTICLE ACCELERATORS↗
DOE OSTI2012

Insights into the Mechanism of Type I Dehydroquinate Dehydratases from Structures of Reaction Intermediates

The biosynthetic shikimate pathway consists of seven enzymes that catalyze sequential reactions to generate chorismate, a critical branch point in the synthesis of the aromatic amino acids. The third enzyme in the pathway, dehydroquinate dehydratase (DHQD), catalyzes the dehydration of 3-dehydroquinate to 3-dehydroshikimate. We present three crystal structures of the type I DHQD from the intestinal pathogens Clostridium difficile and Salmonella enterica. Structures of the enzyme with substrate and covalent pre- and post-dehydration reaction intermediates provide snapshots of successive steps along the type I DHQD-catalyzed reaction coordinate. These structures reveal that the position of the substrate within the active site does not appreciably change upon Schiff base formation. The intermediate state structures reveal a reaction state-dependent behavior of His-143 in which the residue adopts a conformation proximal to the site of catalytic dehydration only when the leaving group is present. We speculate that His-143 is likely to assume differing catalytic roles in each of its observed conformations. One conformation of His-143 positions the residue for the formation/hydrolysis of the covalent Schiff base intermediates, whereas the other conformation positions the residue for a role in the catalytic dehydration event. The fact that the shikimate pathway is absent from humans makes the enzymes of the pathway potential targets for the development of non-toxic antimicrobials. The structures and mechanistic insight presented here may inform the design of type I DHQD enzyme inhibitors.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

Quantitative Prediction of Uranium Speciation and Amidoxime Binding in Seawater from Advanced Simulation Techniques

The goal of this project was to quantitatively predict stability of uranium species and thermochemistry of uranium binding with amidoxime ligands in realistic seawater conditions. The specific aims of the project were: (i) determine the stable species of uranium and its solvation structure in realistic seawater conditions; also speciation and solvation of uranium's major competing species in seawater, vanadium; (ii) accurately predict the free energies (and thereby stability constants) of binding between uranium and amidoxime; (iii) accurately predict the reaction enthalpies and entropies of binding between uranium and amidoxime as well as between vanadium and amidoxime. Main results and conclusions are as follows. First-principles molecular dynamic simulations found that the structure of the Ca 2 UO 2 (CO 3 ) 3 complex is very stable and that one Ca ion binds to the center UO 2 (CO 3 ) 3 4- anion stronger than the other Ca ion. This finding suggests that using time-resolved EXAFS spectra may confirm the asymmetry in binding of the two Ca ions in the aqueous Ca 2 UO 2 (CO 3 ) 3 complex. To consider the common ions, solvation of the Ca 2 UO 2 (CO 3 ) 3 complex in seawater was simulated by classical molecular dynamics simulation. It was found that the structure of the Ca 2 UO 2 (CO 3 ) 3 complex is very stable in the model seawater. A Na+ ion was found to be closely associated with the Ca 2 UO 2 (CO 3 ) 3 complex by indirectly interacting with one axial oxygen atom of the UO 2 group bridged by a water molecule. In addition, the Na + ion interacts closely with one Ca 2+ ion than the other. The present simulations revealed the key role of common ions such as Na + in impacting the solvation, structure, and apparent charge of the Ca 2 UO 2 (CO 3 ) 3 complex in seawater. The sequential processes of UO 2 2+ binding with the three CO 3 2- groups and the two Ca 2+ ions in pure water and in 0.1 M NaCl were simulated by classical molecular dynamics with both the non-constrained brute-force approach and umbrella sampling. The simulated free energies show excellent agreement with the experiment. The coordination structures of UO 2 (CO 3 ) 3 4- and CaUO 2 (CO 3 ) 3 2- were found to be significantly affected by the presence of Na + ions, leading to a monodentate binding of a carbonate group to U and a water molecule entering the first coordination shell of U. To shed light on the binding between uranyl and glutardiamidoxime (H 2 B), an important model and state-of-the-art ligand for seawater uranium extraction, a suite of computational methods was employed. From molecular dynamics (MD) simulations, it was found that the binding configurations of B 2- with uranyl favor the twofold distorted η 2 binding between the oximate ends (C=N-O-) and U, while HB - prefers the chelating mode for the oximate end with the neutral end being solvated by water. The free energies of sequential ligand binding to form UO 2 B, [UO 2 B 2 ] 2- , and [UO 2 (HB)B] - were simulated with umbrella sampling and very good agreement with the experimental values was achieved, which corroborates the structural insights into the binding mode. State-of-the-art polymeric sorbents employ both amidoximate and carboxylate groups on the side chains to achieve optimal U uptake and selectivity, so we simulated the binding of a model amidoximate–carboxylate bifunctional ligand with uranyl. Classical MD and free-energy simulations in 0.5 M NaCl showed that the carboxylate group binds first to uranyl, leading to a loose intermediate state, and then, the amidoximate group binds, resulting in a more stable and tight chelate state. Binding of the second bifunctional ligand follows a similar process, and the two ligands prefer a trans configuration around the uranyl group. The simulated free energies indicate that the two bifunctional ligands bind with uranyl 14 kcal/mol stronger than the two ligands with only amidoximate groups, confirming an important synergy between amidoximate and carboxylate groups in binding uranyl.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗