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At least 325 records · Page 18

A Zika virus mutation enhances transmission potential and confers escape from protective dengue virus immunity

Zika virus (ZIKV) and dengue virus (DENV) are arthropod-borne pathogenic flaviviruses that co-circulate in many countries. To understand some of the pressures that influence ZIKV evolution, we mimic the natural transmission cycle by repeating serial passaging of ZIKV through cultured mosquito cells and either DENV-naive or DENV-immune mice. Compared with wild-type ZIKV, the strains passaged under both conditions exhibit increased pathogenesis in DENV-immune mice. Application of reverse genetics identifies an isoleucine-to-valine mutation (I39V) in the NS2B proteins of both passaged strains that confers enhanced fitness and escape from pre-existing DENV immunity. Introduction of I39V or I39T, a naturally occurring homologous mutation detected in recent ZIKV isolates, increases the replication of wild-type ZIKV in human neuronal precursor cells and laboratory-raised mosquitoes. Our data indicate that ZIKV strains with enhanced transmissibility and pathogenicity can emerge in DENV-naive or -immune settings, and that NS2B-I39 mutants may represent ZIKV variants of interest.

59 BASIC BIOLOGICAL SCIENCES↗

Quasi‐Steady State Supersaturation: Do High Values Derived From ESCAPE Represent Real High Supersaturations and the Potential for Condensational Invigoration?

Deep convective clouds were intensively sampled during the Experiment of Sea Breeze Convection, Aerosols, Precipitation, and Environment (ESCAPE) with coordinated flights of the NRC Convair-580 and SPEC Learjet. A total of 219 updraft core segments were sampled over coastal Texas and Louisiana under diverse meteorological conditions. Median updraft properties included widths of ∼1 km, velocities of 4.8 m s −1 , droplet number concentrations of ∼400 cm −3 , and liquid water contents of 0.9 g m −3 . The limitations of using the quasi-steady state approximation to derive supersaturations were explored. Supersaturation (S QSS ) estimated from in situ observations under a quasi-steady state assumption averaged 0.4% but occasionally exceeded 2%, with values >1% (high supersaturations) identified as statistical outliers. Two case studies illustrated the conditions linked to high supersaturations. In a storm over the Gulf, median core S QSS reached 2.46% in the developing stage compared to 2.17% in the mature stage under similar thermodynamic conditions. In a storm over coastal Louisiana, S QSS peaked near 11% within a 13.7-m s −1 updraft, accompanied by predominantly supercooled liquid droplets at −13°C and exceptionally low diameter concentrations of 0.29 mm cm −3 . Bootstrap analysis of all sampled cores showed that high supersaturations are most probable in cold and mixed-phase regimes with moderate to strong updrafts and are strongly influenced by vertical velocity and droplet number concentrations. In conclusion, while extreme supersaturations (∼10%) were rare, their occurrence underscores the need for targeted multiplatform observations to resolve their spatiotemporal variability and assess their potential role in deep convective invigoration.

54 ENVIRONMENTAL SCIENCES↗

Calculation of spatial distribution of optical escape factor and its application to He I collisional-radiative model

An integral analytical formula for a spatial distribution of the optical escape factor (OEF) in an infinite cylindrical plasma is derived as a function of an arbitrary upper state spatial density profile, the temperature ratio of the upper state to the lower state, and the optical depth of the corresponding transition. Test calculations are carried out for three different upper state profiles, i.e., uniform (rectangular), parabolic, and Gaussian upper state profiles. The OEF takes on negative values at the periphery of the parabolic and Gaussian upper state profiles. These characteristics cannot be expressed by the conventional OEF formulas derived for the center of the plasma, even though the optical depth is increased. In addition to the analytical derivation of the formula, two practical formulas are proposed: an empirical formula of the spatial distribution of the OEF for the Gaussian upper state density profile and a linear formula of the OEF distribution for upper state profiles that are expressed as linear combinations. These formulas enable us to calculate the spatial distribution of the OEF for the multiple-Gaussian upper state profile without the need for time-consuming integral calculations.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

A quantitative method for determination of carrier escape efficiency in GaN-based light-emitting diodes: A comparison of open- and short-circuit photoluminescence

We propose a method to quantitatively analyze the internal quantum efficiency (IQE) as well as the efficiencies of non-radiative recombination in the active region (NRA) and carrier escape out of the active region (ESC) by comparing open-circuit (OC) to short-circuit (SC) conditions of InGaN-based light-emitting diodes (LEDs). First, the IQE was extracted from excitation-power dependent photoluminescence at low temperature, and the electron-hole wavefunction overlaps were calculated under OC and SC conditions. Then, the NRA and ESC efficiencies were quantitatively deduced and also compared with photocurrent data. The proposed method would be useful for assessing and designing quantum barriers and analyzing leakage current in LEDs.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

THE EFFECTS OF WAVE ESCAPE ON FAST MAGNETOSONIC WAVE TURBULENCE IN SOLAR FLARES

One of the leading models for electron acceleration in solar flares is stochastic acceleration by weakly turbulent fast magnetosonic waves ({sup f}ast waves{sup )}. In this model, large-scale flows triggered by magnetic reconnection excite large-wavelength fast waves, and fast-wave energy then cascades from large wavelengths to small wavelengths. Electron acceleration by large-wavelength fast waves is weak, and so the model relies on the small-wavelength waves produced by the turbulent cascade. In order for the model to work, the energy cascade time for large-wavelength fast waves must be shorter than the time required for the waves to propagate out of the solar-flare acceleration region. To investigate the effects of wave escape, we solve the wave kinetic equation for fast waves in weak turbulence theory, supplemented with a homogeneous wave-loss term. We find that the amplitude of large-wavelength fast waves must exceed a minimum threshold in order for a significant fraction of the wave energy to cascade to small wavelengths before the waves leave the acceleration region. We evaluate this threshold as a function of the dominant wavelength of the fast waves that are initially excited by reconnection outflows.

79 ASTRONOMY AND ASTROPHYSICS↗

Coupled escape probability for an asymmetric spherical case: Modeling optically thick comets

We have adapted Coupled Escape Probability, a new exact method of solving radiative transfer problems, for use in asymmetrical spherical situations. Our model is intended specifically for use in modeling optically thick cometary comae, although not limited to such use. This method enables the accurate modeling of comets' spectra even in the potentially optically thick regions nearest the nucleus, such as those seen in Deep Impact observations of 9P/Tempel 1 and EPOXI observations of 103P/Hartley 2.

79 ASTRONOMY AND ASTROPHYSICS↗

Constraining the Lyα escape fraction with far-infrared observations of Lyα emitters

We study the far-infrared properties of 498 Lyα emitters (LAEs) at z = 2.8, 3.1, and 4.5 in the Extended Chandra Deep Field-South, using 250, 350, and 500 μm data from the Herschel Multi-tiered Extragalactic Survey and 870 μm data from the LABOCA ECDFS Submillimeter Survey. None of the 126, 280, or 92 LAEs at z = 2.8, 3.1, and 4.5, respectively, are individually detected in the far-infrared data. We use stacking to probe the average emission to deeper flux limits, reaching 1σ depths of ∼0.1 to 0.4 mJy. The LAEs are also undetected at ≥3σ in the stacks, although a 2.5σ signal is observed at 870 μm for the z = 2.8 sources. We consider a wide range of far-infrared spectral energy distributions (SEDs), including an M82 and an Sd galaxy template, to determine upper limits on the far-infrared luminosities and far-infrared-derived star formation rates of the LAEs. These star formation rates are then combined with those inferred from the Lyα and UV emission to determine lower limits on the LAEs' Lyα escape fraction (f {sub esc}(Lyα)). For the Sd SED template, the inferred LAEs f {sub esc}(Lyα) are ≳ 30% (1σ) at z = 2.8, 3.1, and 4.5, which are all significantly higher than the global f {sub esc}(Lyα) at these redshifts. Thus, if the LAEs f {sub esc}(Lyα) follows the global evolution, then they have warmer far-infrared SEDs than the Sd galaxy template. The average and M82 SEDs produce lower limits on the LAE f {sub esc}(Lyα) of ∼10%-20% (1σ), all of which are slightly higher than the global evolution of f {sub esc}(Lyα), but consistent with it at the 2σ-3σ level.

79 ASTRONOMY AND ASTROPHYSICS↗

Planetary population synthesis coupled with atmospheric escape: a statistical view of evaporation

We apply hydrodynamic evaporation models to different synthetic planet populations that were obtained from a planet formation code based on the core-accretion paradigm. We investigated the evolution of the planet populations using several evaporation models, which are distinguished by the driving force of the escape flow (X-ray or EUV), the heating efficiency in energy-limited evaporation regimes, or both. Although the mass distribution of the planet populations is barely affected by evaporation, the radius distribution clearly shows a break at approximately 2 R {sub ⊕}. We find that evaporation can lead to a bimodal distribution of planetary sizes and to an 'evaporation valley' running diagonally downward in the orbital distance—planetary radius plane, separating bare cores from low-mass planets that have kept some primordial H/He. Furthermore, this bimodal distribution is related to the initial characteristics of the planetary populations because low-mass planetary cores can only accrete small primordial H/He envelopes and their envelope masses are proportional to their core masses. We also find that the population-wide effect of evaporation is not sensitive to the heating efficiency of energy-limited description. However, in two extreme cases, namely without evaporation or with a 100% heating efficiency in an evaporation model, the final size distributions show significant differences; these two scenarios can be ruled out from the size distribution of Kepler candidates.

79 ASTRONOMY AND ASTROPHYSICS↗

The metagalactic ionizing background: A crisis in UV photon production or incorrect galaxy escape fractions?

Recent suggestions of a “photon underproduction crisis” have generated concern over the intensity and spectrum of ionizing photons in the metagalactic ultraviolet background (UVB). The balance of hydrogen photoionization and recombination determines the opacity of the low-redshift intergalactic medium (IGM). We calibrate the hydrogen photoionization rate (Γ{sub H}) by comparing Hubble Space Telescope spectroscopic surveys of the low-redshift column density distribution of H i absorbers and the observed (z<0.4) mean Lyα flux decrement, D{sub A}=(0.014)(1+z){sup 2.2}, to new cosmological simulations. The distribution, f(N{sub H I},z)≡d{sup 2}N/d(logN{sub H I})dz, is consistent with an increased UVB that includes contributions from both quasars and galaxies. Our recommended fit, Γ{sub H}(z)=(4.6×10{sup −14} s{sup −1})(1+z){sup 4.4} for 0<z<0.47, corresponds to unidirectional LyC photon flux Φ{sub 0}≈5700 cm{sup −2} s{sup −1} at z = 0. This flux agrees with observed IGM metal ionization ratios (C iii/C iv and Si iii/Si iv) and suggests a 25%–30% contribution of Lyα absorbers to the cosmic baryon inventory. The primary uncertainties in the low-redshift UVB are the contribution from massive stars in galaxies and the LyC escape fraction (f{sub esc}), a highly directional quantity that is difficult to constrain statistically. We suggest that both quasars and low-mass starburst galaxies are important contributors to the ionizing UVB at z<2. Their additional ionizing flux would resolve any crisis in photon underproduction.

79 ASTRONOMY AND ASTROPHYSICS↗

ESCAPE FROM VELA X

While the Vela pulsar and its associated nebula are often considered as the archetype of a system powered by a {approx}10{sup 4} year old isolated neutron star, many features of the spectral energy distribution of this pulsar wind nebula (PWN) are both puzzling and unusual. Here we develop a model that for the first time relates the main structures in the system, the extended radio nebula (ERN) and the X-ray cocoon through continuous injection of particles with a fixed spectral shape. We argue that diffusive escape of particles from the ERN can explain the steep Fermi-LAT spectrum. In this scenario Vela X should produce a distinct feature in the locally measured cosmic ray (CR) electron spectrum at very high energies. This prediction can be tested in the future using the Cherenkov Telescope Array. If particles are indeed released early in the evolution of PWNe and can avoid severe adiabatic losses, PWN provides a natural explanation for the rising positron fraction in the local CR spectrum.

79 ASTRONOMY AND ASTROPHYSICS↗

Using ground-based measurements to recover the spectra of radiation escaping from distant light-pollution sources

ABSTRACT A professional dark sky assessment normally requires the numerical modelling of light propagation from ground-based sources into the atmosphere. The spectral power distribution (SPD) of light escaping from an artificial source is one of the key parameters needed in predicting models to simulate the optical signatures of the night sky as a function of distance. SPD at zero distance is due to a non-trivial superposition of light beams, but does not necessarily coincide with the weighted SPD of individual lights. This is because most photons can be removed by obstacles or can interact with many surfaces before being directed into the atmosphere. We have developed an experimental and theoretical method for obtaining the initial SPD from ground-based spectroscopy of the night sky. The method is applicable to distant sources of light and is demonstrated in field measurements conducted on the light dome of Chicago with a new sky glow spectrometer. We show that the method requires analysing the relative impact of local light sources scattered around the measuring site on the radiance of the light dome. Our theoretical method along with ground-based spectroscopy represents a new approach to characterizing light-pollution sources which are otherwise difficult to study due to lack of information on either light-source inventory or a heterogeneous 3D structure of light-emitting and blocking environments.

Kocifaj, M.↗

Modified Kepler's law, escape speed, and two-body problem in modified Newtonian dynamics-like theories

We derive a simple analytical expression for the two-body force in a subclass of modified Newtonian dynamics (MOND) theories and make testable predictions in the modification to the two-body orbital period, shape, precession rate, escape speed, etc. We demonstrate the applications of the modified Kepler's law in the timing of satellite orbits around the Milky Way, and checking the feasibility of MOND in the orbit of the large Magellanic cloud, the M31 galaxy, and the merging bullet clusters. MOND appears to be consistent with satellite orbits although with a tight margin. Our results on two-bodies are also generalized to restricted three-body, many-body problems, rings, and shells.

79 ASTRONOMY AND ASTROPHYSICS↗

Vector bosons escaping from the brane: e{sup +}e{sup -}{yields}{gamma}+ nothing

We consider phenomenological consequences of the RS2-n model with an infinite extra dimension, namely, the production, in high-energy collisions, of a photon or Z boson escaping from our brane in association with a photon remaining on the brane. This would show up as process e{sup +}e{sup -}{yields}{gamma}+ nothing. We compare the signal with the standard model background coming from e{sup +}e{sup -}{yields}{gamma}{bar {nu}}{nu}. We also make a comparison with e{sup +}e{sup -}{yields}{gamma}+ nothing in the Arkani-Hamed-Dimopoulos-Dvali model.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Confinement and Collective Escape of Active Particles

Active matter broadly covers the dynamics of self-propelled particles. While the onset of collective behavior in homogenous active systems is relatively well understood, the effect of inhomogeneities such as obstacles and traps lacks overall clarity. Here, we study how interacting, self-propelled particles become trapped and released from a trap. We have found that captured particles aggregate into an orbiting condensate with a crystalline structure. As more particles are added, the trapped condensates escape as a whole. Our results shed light on the effects of confinement and quenched disorder in active matter.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Escape Ratio Contributes More Than Fluorescence Yield to SIF-GPP Relationship Over Crops and Rainforest

Solar-induced chlorophyll fluorescence (SIF) is an effective indicator to track the gross primary productivity (GPP). However, there is still a lack of a clear understanding for the contribution of physiological and structural factors to the SIF–GPP relationship at the canopy scale. To quantify the influence of different SIF components, particularly the photon escape ratio ($f$ esc ) and fluorescence yield (Φ F ), on the SIF–GPP relationship, this study evaluated the performance of various vegetation indices (VIs), SIF components, light use efficiency (LUE), and GPP over two typical biomes (crops and rainforest), using a range of satellite remote sensing products. In August of each year from 2018 to 2020, both SIF and GPP over United States (U.S.) Corn Belt are higher than those over the Amazon rainforest, attributed to the consistent pattern of higher $f$ esc and LUE over crops than over rainforest, as well as Φ F . Furthermore, the structural signals represented by $f$ esc (R = 0.41–0.64) can better capture the LUE variations than Φ F (R = 0.10–0.30) for each biome. In conclusion, this study highlights that $f$ esc , determined by canopy structure, has great potential to capture LUE and GPP changes within and across biomes.

60 APPLIED LIFE SCIENCES↗

The escape of high explosive products: An exact-solution problem for verification of hydrodynamics codes

This paper documents the escape of high explosive (HE) products problem. The problem, first presented by Fickett & Rivard, tests the implementation and numerical behavior of a high explosive detonation and energy release model and its interaction with an associated compressible hydrodynamics simulation code. The problem simulates the detonation of a finite-length, one-dimensional piece of HE that is driven by a piston from one end and adjacent to a void at the other end. The HE equation of state is modeled as a polytropic ideal gas. The HE detonation is assumed to be instantaneous with an infinitesimal reaction zone. Via judicious selection of the material specific heat ratio, the problem has an exact solution with linear characteristics, enabling a straightforward calculation of the physical variables as a function of time and space. Lastly, implementation of the exact solution in the Python code ExactPack is discussed, as are verification cases for the exact solution code.

97 MATHEMATICS AND COMPUTING↗

Structure-guided multivalent nanobodies block SARS-CoV-2 infection and suppress mutational escape

Monoclonal antibodies are an important weapon in the battle against COVID-19. However, these large proteins are difficult to produce in the needed quantities and at low cost. Attention has turned to nanobodies, which are aptly named, single-domain antibodies that are easier to produce and have the potential to be administered by inhalation. Koenig et al. describe four nanobodies that bind to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike protein and prevent infection of cells (see the Perspective by Saelens and Schepens). Structures show that the nanobodies target two distinct epitopes on the SARS-CoV-2 spike protein. Multivalent nanobodies neutralize virus much more potently than single nanobodies, and multivalent nanobodies that bind two epitopes prevent the emergence of viral escape mutants.

60 APPLIED LIFE SCIENCES↗

Structural Basis for Escape of Human Astrovirus from Antibody Neutralization: Broad Implications for Rational Vaccine Design

ABSTRACT Human astroviruses are recognized as a leading cause of viral diarrhea worldwide in children, immunocompromised patients, and the elderly. There are currently no vaccines available to prevent astrovirus infection; however, antibodies developed by healthy individuals during previous infection correlate with protection from reinfection, suggesting that an effective vaccine could be developed. In this study, we investigated the molecular mechanism by which several strains of human astrovirus serotype 2 (HAstV-2) are resistant to the potent HAstV-2-neutralizing monoclonal antibody PL-2 (MAb PL-2). Sequencing of the HAstV-2 capsid genes reveals mutations in the PL-2 epitope within the capsid's spike domain. To understand the molecular basis for resistance from MAb PL-2 neutralization, we determined the 1.35-Å-resolution crystal structure of the capsid spike from one of these HAstV-2 strains. Our structure reveals a dramatic conformational change in a loop within the PL-2 epitope due to a serine-to-proline mutation, locking the loop in a conformation that sterically blocks binding and neutralization by MAb PL-2. We show that mutation to serine permits loop flexibility and recovers MAb PL-2 binding. Importantly, we find that HAstV-2 capsid spike containing a serine in this loop is immunogenic and elicits antibodies that neutralize all HAstV-2 strains. Taken together, our results have broad implications for rational selection of vaccine strains that do not contain prolines in antigenic loops, so as to elicit antibodies against diverse loop conformations. IMPORTANCE Human astroviruses (HAstVs) infect nearly every person in the world during childhood and cause diarrhea, vomiting, and fever. In this study, we investigated how several strains of HAstV are resistant to a virus-neutralizing monoclonal antibody. We determined the crystal structure of the capsid protein spike domain from one of these HAstV strains and found that a single amino acid mutation induces a structural change in a loop that is responsible for antibody binding. Our findings reveal how viruses can escape antibody neutralization and provide insight for the rational design of vaccines to elicit diverse antibodies that provide broader protection from infection.

Bogdanoff, Walter A. (ORCID:0000000165321006)↗