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Soil Water Retention and Hydraulic Conductivity Data and Model at Snodgrass Mountain in East River Watershed, Colorado 2020-2025

This data package includes soil water retention and hydraulic conductivity data and model fitting results from measurements of ex-situ soil samples and in-situ soil sensors at Snodgrass Mountain. Soil water retention curves (SWRC) characterize soil water content as a function of soil water potential. SWRC depends on soil texture and pore structure and can be used to describe the constraints on biogeochemical processes in terms of soil water availability. In this data package, the sample identification follows the format SG-X-Y, where SG refers to Snodgrass Mountain, X is the location identifier, and Y is the depth identifier at the same X (shallow Y=1). Specifically, SG-EHS is associated with ecohydrology sites under the East-Taylor Watershed Community Observatory Sites directory, and SG-ERTn (upslope n=1) are points along the Snodgrass electrical resistivity tomography transect not associated with the existing site names in the directory. The sample and location information can be found in metadata.csv. Sampling and Measurements Each sample falls into one of the three sampling methods – (1) intact cores, (2) repacked samples, or (3) soil sensors – and one of the two measurement methods – (a) laboratory or (b) in-situ. Both intact cores and repacked samples were measured using the laboratory methods, which include measurements of soil water potential (HYPROP & WP4C, METER), saturated (KSAT, METER) and unsaturated hydraulic conductivity (HYPROP). The in-situ method uses a pair of co-located soil sensors to measure volumetric water content (TEROS12, METER) and soil water potential (TEROS21, METER), and the hydraulic conductivity was not measured. In comparison, the laboratory methods progress from full saturation to dry conditions, and the in-situ method includes both dry-to-wet and wet-to-dry cycles. The sampling and measurement methods for each sample can be found in metadata.csv, and more information about the measurements is detailed in the Methods section below. Models Retention and hydraulic conductivity data were fitted with four van-Genuchten-type models (specified by “model_name” column in the files): (1) traditional constrained van Genuchten model (“vG_constrained”), (2) traditional unconstrained van Genuchten model (“vG_unconstrained”), (3) PDI-variant of the constrained van Genuchten model (“vG_constrained_PDI”), and (4) PDI-variant of the unconstrained van Genuchten model (“vG_unconstrained_PDI”). The difference between the constrained (1: n) and the unconstrained (2: n, m) van Genuchten models is the number of pore-size distribution parameters in the model equations, giving the unconstrained model more degrees of freedom when fitting the data. Between the traditional and the PDI-variant models, model fitting differs the most at the dry end of the measurements. The traditional models allow infinite suction at the residual water content (water content does not drop below residual water content), and the PDI-variant models enforce a soil water potential value of pF=6.8 (~ -630 MPa) at oven-dryness (water content reaches 0). The inclusion of the van-Genuchten-type models is due to their common application. If other retention models are required, users can access the data in data.csv for further data fitting. More information about the models can be found in the Methods section below. Fitting Tasks The model fitting can be categorized into three levels of tasks (specified by “fitting_task” column in the files). Level 1 (“fit_retention”) only includes retention data fitting (the only level available for the in-situ method). Level 2 (“fit_retention_conductivity”) includes both retention and hydraulic conductivity data fitting, and the saturated hydraulic conductivity (Ks, a parameter of the hydraulic conductivity functions) is fixed by the measurements from KSAT. Level 3 (“fit_retention_conductivity_Ks”) also includes both retention and hydraulic conductivity data fitting, but Ks is a fitted parameter without the constraints from KSAT measurements. Among the same retention models (e.g. vG_constrained models of the same sample), level 1 should produce the best retention data fitting. Level 2 should have the highest misfit of the retention and hydraulic conductivity data, because the retention and hydraulic conductivity functions share common model parameters, and the unsaturated hydraulic conductivity (HYPROP) data fitting is subject to Ks measured independently by KSAT. Level 3 should have mid-level misfits of the retention and hydraulic conductivity data. While level 3 fits the hydraulic conductivity data better than level 2, the fitted Ks value might be unreasonable due to the lack of constraints at the wet end of the measurements. General recommendation when using this data package: (1) Choice of sampling methods: Intact cores and in-situ soil sensors could be prioritized because these sampling methods are less destructive. While the repacked samples were packed to the target bulk density (estimated post-sampling, when sample volume was known), these samples had altered pore structures. Nevertheless, intact cores might suffer from sample gaps that would lead to overestimation of Ks (sample gaps can be inferred from the “soil_sample_volume” column in metadata.csv when the value is < 249). In-situ method also has higher uncertainty in characterizing the wet end of the SWRC because of sensor limitations and the difficulty in reaching full saturation under natural conditions. (2) Choice of fitting tasks: When only retention data is needed, level 1 (“fit_retention”) should be prioritized. When both retention and hydraulic conductivity data are needed, level 2 (“fit_retention_conductivity”) could be prioritized. (3) Choice of models: This could depend on what the downstream models call for. If no specific model is required, model misfit could be used as a ranking criterion. Model misfit values in terms of RMSE can be found in model_parameters.csv. The following files are included in this data package: (1) metadata.csv – This file includes the general information of each sample, including location (description, geocoordinates, elevation), sampling and measurements details (method, depth, time or period, volume, instruments), and soil physical properties (bulk density, saturated hydraulic conductivity, only applicable to physical soil samples). (2) data.csv – This file includes soil water potential, volumetric water content, and unsaturated hydraulic conductivity data of each sample. Column “instrument” specifies the instrument (HYPROP, WP4C, or TEROS) used to perform the measurements. (3) model_fit.csv – This file includes soil water potential, volumetric water content, and unsaturated hydraulic conductivity fitted from the four models and three fitting tasks. Column “model_name” specifies the retention model used, and “fitting_task” specifies the level of data fitting. Missing values indicate that the variable does not apply to that fitting task. (4) model_parameters.csv – This file includes the fitted model parameters, model misfits, and conventional water content thresholds (field capacity and wilting point) from the four models and three fitting tasks. Column “model_name” specifies the retention model used, and “fitting_task” specifies the level of data fitting. Missing values indicate that the parameter does not apply to that model and/or that fitting task. (5) data_Ks.csv – This file includes the saturated hydraulic conductivity measurements from KSAT. (6) /figure/*.png – This folder includes three quick visualizations of the data, retention model fitting results and misfits, and hydraulic conductivity model fitting results, misfits, and parameters. The model fitting results are separated by samples and fitting tasks and colored by models. Zoom-in required. (7) /hyprop/*.bdhx – This folder includes proprietary hyprop files that require the free Labros SoilView-Analysis (METER) to open. Users can explore data fitting using other retention models (i.e. Brooks-Corey, Fredlund-Xing, Kosugi, bimodal models). Be aware that Ks value is pre-entered under “Fitting tab, Conductivity functions parameters” for level 2 fitting. If the value is lost, please refer to metadata.csv under “Ks” column. (8) Six file-level metadata that summarize file, header, column, and variable information of all files. This work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.

EARTH SCIENCE > LAND SURFACE > SOILS↗

Data and scripts associated with a manuscript modeling microbial regulation of priming effects

This data package is associated with the publication “Modeling Microbial Regulatory Feedback in Organic Matter Decomposition Identifies Copiotrophic Traits as Key Drivers of Positive Priming” published as a preprint on BioRXiv by Ahamed et al. (2026); https://doi.org/10.1101/2024.08.11.607483. The package contains MATLAB scripts and saved simulation outputs used to implement a cybernetic model of microbial regulation during complex organic matter (OM) decomposition governing priming effects. It includes models of (i) single microbial functional groups (copiotrophic or oligotrophic degraders) and (ii) binary consortia composed of degraders and non-degraders with contrasting or common growth traits. Simulation results were generated using Monte Carlo analyses, with randomized key model parameters across a range of environmental mixing fractions of complex and labile OM. The dataset was created to provide a transparent and reusable computational framework for systematically exploring how microbial growth traits, metabolic regulation, and community composition influence OM decomposition dynamics and priming effects. For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. In addition to a readme, this data package also includes a file-level metadata (FLMD) file that describes each file and a data dictionary (DD) that describes the variable definitions. This package includes: (1) annotated MATLAB code implementing the system of ordinary differential equations and cybernetic control laws; (2) saved output files containing data (e.g., biomass, substrates, enzyme levels, priming metrics); and (3) scripts for processing saved outputs and regenerating figures. Specifically, the data package contains three main MATLAB scripts: runPrimingModel.m, runPlotData.m, and runPlotSuppFigS1.m, along with this readme and supporting documentation. Users should begin with runPrimingModel.m, which contains the annotated code implementing the system of ordinary differential equations and cybernetic control laws. This script runs the Monte Carlo simulations of microbial OM decomposition and allows users to modify microbial trait definitions, adjust parameter distributions, or define new community configurations. Simulation outputs are automatically saved as .mat files in the folder named SavedData, which stores all pre-generated results included in this package. The second script, runPlotData.m, reads files from the SavedData folder and processes them to regenerate the figures presented in the manuscript. The third script, runPlotSuppFigS1.m, specifically generates Figure S1 in the Supplementary Material of the manuscript. The package also includes the aforementioned files in non-proprietary .txt format. If users intend to use them, they should first save the files in their respective .m or .mat formats prior to execution in MATLAB.

Biomass concentration↗

Bayesian inference of Stochastic reaction networks using Multifidelity Sequential Tempered Markov Chain Monte Carlo

Stochastic reaction network models are often used to explain and predict the dynamics of gene regulation in single cells.These models usually involve several parameters, such as the kinetic rates of chemical reactions, that are not directly measurable and must be inferred from experimental data. Bayesian inference provides a rigorous probabilistic frame-work for identifying these parameters by finding a posterior parameter distribution that captures their uncertainty.Traditional computational methods for solving inference problems such as Markov Chain Monte Carlo methods based on classical Metropolis-Hastings algorithm involve numerous serial evaluations of the likelihood function, which in turn requires expensive forward solutions of the chemical master equation (CME). We propose an alternate approach based on a multifidelity extension of the Sequential Tempered Markov Chain Monte Carlo (ST-MCMC) sampler. This algorithm is built upon Sequential Monte Carlo and solves the Bayesian inference problem by decomposing it into a sequence of efficiently solved subproblems that gradually increase both model fidelity and the influence of the observed data. We reformulate the finite state projection (FSP) algorithm, a well-known method for solving the CME, to produce a hierarchy of surrogate master equations to be used in this multifidelity scheme. To determine the appropriate fidelity, we introduce a novel information-theoretic criteria that seeks to extract the most information about the ultimate Bayesian posterior from each model in the hierarchy without inducing significant bias. This novel sampling scheme is tested with high performance computing resources using biologically relevant problems.

97 MATHEMATICS AND COMPUTING↗

The Impala's horn applied to posterior samples of Ti-6Al-4V strength model parameters

We have generated strength model parameters for the Preston-Tonks-Wallace (PTW) model of plastic deformation based on a collection of Ti-6Al-4V alloy data and a Bayesian framework. This data collected from the literature includes different chemistries and processes. The experiments include quasistatic compression, Split Hopkinson Pressure Bar (SHPB) compression, and Taylor cylinders. Here we use posterior parameter distributions applied to a hypothetical impact referred to as the Impala's horn. The Impala's horn is like a Taylor cylinder, but modified to have a conical pro le that is truncated before coming to a point. The smaller diameter at the impact end results in higher calculated strain rates and strains than the same velocity impact with the traditional Taylor profile. The modified geometry exercises the behavior of the strength model outside the range of conditions found in the calibration data. Here we sort posterior strength models based on their flow stress at characteristic values for this hypothetical deformation. Then we compare the performance of these posterior models based on two simple observable final state properties of the Impala's horn.

36 MATERIALS SCIENCE↗

Performance Comparison of Circular and Spherical Error Probable Estimators

This report compares the performance of three Circular Error Probable (CEP) estimators: the Grubbs-Patnaik estimator, a new, non-iterative, radial-integration estimator, and a median estimator. It also compares the performance of two Spherical Error Probable (SEP) estimators. The performance of each estimator is assessed in terms of bias, uncertainty, robustness, and computational complexity. Robustness is evaluated with respect to outliers, variations in the underlying statistical distribution characterizing munition impact positions, and impact-position measurement errors. The performance assessments indicate the radial-integration and Grubbs-Patnaik estimators perform nearly identically providing the statistical distribution of impact-position coordinates is jointly normal with zero means. In that case, both estimators outperform the median estimator by about 2% relative to the true CEP in terms of estimator uncertainty. The bias performance of the radial-integration and median estimators is close to zero for jointly normal impacts, however, the Grubbs-Patnaik estimator can be significantly biased for jointly normal impacts with non-zero means. When the statistical distribution characterizing impact positions is known, but not jointly normal, the radial-integration estimator is superior. In this case, the median estimator also outperforms the Grubbs-Patnaik estimator but is not quite as good as the radial-integration estimator. If the statistical distribution characterizing impacts is unknown and not jointly normal, or if distribution parameters are difficult or impractical to estimate, or if test data is corrupted with outliers, then the median estimator dramatically outperforms the other estimators, especially in terms of estimation bias. Unexpectedly, measurement noise did not significantly degrade the performance of any of the estimators, except for cases with signal to noise ratios less than five. Although the Grubbs-Patnaik estimator has remained the gold standard for CEP estimation for over half a century, the performance assessments indicate the new, non-iterative, radial-integration estimator and the median estimator offer significant advantages and, in most practical real-world conditions, are superior estimators. These estimators are also useful for SEP estimation whereas the Grubbs-Patnaik estimator does not extend to three dimensions.

97 MATHEMATICS AND COMPUTING↗

Commissioning of SRF Cavity Analyzer System

Research and development in Superconducting Radio Frequency (SRF) cavities manufacturing, surface treatment, preparation, and doping techniques for the improvement of cavities performance necessitate reliable cavities’ intrinsic quality factor measurement with accurate and repeatable results. Fermilab Vertical Test Stand facility (VTS) performs ~270 cavities tests per year, including R&D cavities as well as production cavities at each step of their preparation for the placement in accelerator’s cryomodules. Current Fermilab VTS testing system is based on the scalar approach of power measurement, which neglects potential error factors of the RF networks with distributed parameters, hence the assessed measurement errors of such a system might be slightly underestimated. Alternative approach, utilizing a vector measurement (amplitude and phase) of RF signals in the setup with a cavity as a device under test, promises an enhanced accuracy and results traceability. New cavity an alyser system based on this approach (Vector VTS) was developed by D. Frolov et al. and currently undergoes a commissioning process. Basic underlying principles of the system will be presented with the methods of quality factor extraction from S-parameters measurement of multiport cavities and brief error analysis will be discussed. The system architecture will be shown with main components parameters and ensuing testing capabilities. Multiple tests results will be discussed with a cross-check comparison of the results obtained with a conventional testing method. System advantages such as automated calibration process and additional features as a built- in microphonics measurement capability will be presented.

Netepenko, A.↗

Simulating target tests at AP0 facility for Mu2e

The predicted production of muons and energy deposition for the production target of the Mu2e experiment are dependent on the documentation of cross-sections values, the properties of the target’s material, etc. Hence, making real tests on similar targets before its use on Mu2e will be a good indicator of the accuracy of the simulations done for the experiment. The main goal of the project is to simulate a target test at the AP0 Target Facility, previously used to create the muon beam for the Muon g-2 experiment. Results from these simulations will be used as input to engineering models of the target to produce predicted stress and surface temperature distributions, parameters that will later be measured in future beam runs to validate underlying cross section models.

Delgado, Amii Matamoros↗

Proxy-Based Bayesian Inversion Of Poroelastic Simulations To Interpret Strain Tensor Data Measured During Well Testing

The long runtimes of 3D poroelastic numerical simulators makes it impractical to interpret deformation datasets using many inversion schemes. Recent advances in instrumentation have made it possible to measure the strain tensor during well testing, but the lack of robust inversion methods is limiting the ability to interpret these data. We have developed an inversion workflow that reduces the number of computations required to complete a Bayesian inversion using DREAMzs. The workflow trains a KNN model using output from the poroelastic simulator, and then uses the KNN model as a proxy for the simulator during inversion. The workflow also includes a strategy for ensuring the results from the proxy model converge to the results from the simulator, ensuring the accuracy of the final results. An idealized example configured to represent a well test in a deep aquifer is used to verify that the workflow correctly identifies parameters and characterizes noise. Field data measured using strainmeters during an injection test at an oil reservoir in Oklahoma are used to evaluate performance with a real dataset. The workflow identified 265 history matching solutions out of 1240 total simulation runs (21% acceptance ratio), and the results are used to characterize posterior parameter distribution and evaluate the prediction uncertainty. This approach makes it feasible to invert strain data measured during well testing and this has the potential to improve the characterization of aquifers and reservoirs.

Roudini, Soheil↗

Near-Efficient and Non-Asymptotic Multiway Inference

We establish non-asymptotic efficiency guarantees for tensor decomposition–based inference in count data models. Under a Poisson framework, we consider two related goals: (i) parametric inference , the estimation of the full distributional parameter tensor, and (ii) multiway analysis , the recovery of its canonical polyadic (CP) decomposition factors. Our main result shows that in the rank-one setting, a rank-constrained maximum-likelihood estimator achieves multiway analysis with variance matching the Cramér–Rao Lower Bound (CRLB) up to absolute constants and logarithmic factors. This provides a general framework for studying “near-efficient” multiway estimators in finite-sample settings. For higher ranks, we illustrate that our multiway estimator may not attain the CRLB; nevertheless, CP-based parametric inference remains nearly minimax optimal, with error bounds that improve on prior work by offering more favorable dependence on the CP rank. Numerical experiments corroborate near-efficiency in the rank-one case and highlight the efficiency gap in higher-rank scenarios.

97 MATHEMATICS AND COMPUTING↗

Overview of the DESI Milky Way Survey

Abstract We describe the Milky Way Survey (MWS) that will be undertaken with the Dark Energy Spectroscopic Instrument (DESI) on the Mayall 4 m telescope at the Kitt Peak National Observatory. Over the next 5 yr DESI MWS will observe approximately seven million stars at Galactic latitudes ∣ b ∣ > 20°, with an inclusive target selection scheme focused on the thick disk and stellar halo. MWS will also include several high-completeness samples of rare stellar types, including white dwarfs, low-mass stars within 100 pc of the Sun, and horizontal branch stars. We summarize the potential of DESI to advance understanding of the Galactic structure and stellar evolution. We introduce the final definitions of the main MWS target classes and estimate the number of stars in each class that will be observed. We describe our pipelines for deriving radial velocities, atmospheric parameters, and chemical abundances. We use ≃500,000 spectra of unique stellar targets from the DESI Survey Validation program (SV) to demonstrate that our pipelines can measure radial velocities to ≃1 km s −1 and [Fe/H] accurate to ≃0.2 dex for typical stars in our main sample. We find the stellar parameter distributions from ≈100 deg 2 of SV observations with ≳90% completeness on our main sample are in good agreement with expectations from mock catalogs and previous surveys.

79 ASTRONOMY AND ASTROPHYSICS↗

The Binary Fraction of Stars in the Dwarf Galaxy Ursa Minor via Dark Energy Spectroscopic Instrument

We utilize multi-epoch line-of-sight velocity measurements from the Milky Way Survey of the Dark Energy Spectroscopic Instrument to estimate the binary fraction for member stars in the dwarf spheroidal galaxy Ursa Minor. Our dataset comprises 670 distinct member stars, with a total of more than 2,000 observations collected over approximately one year. We constrain the binary fraction for UMi to be $0.61^{+0.16}_{-0.20}$ and $0.69^{+0.19}_{-0.17}$, with the binary orbital parameter distributions based on solar neighborhood observation from Duquennoy & Mayor (1991) and Moe & Di Stefano (2017), respectively. Furthermore, by dividing our data into two subsamples at the median metallicity, we identify that the binary fraction for the metal-rich ([Fe/H]>-2.14) population is slightly higher than that of the metal-poor ([Fe/H]<-2.14) population. Based on the Moe & Di Stefano model, the best-constrained binary fractions for metal-rich and metal-poor populations in UMi are $0.86^{+0.14}_{-0.24}$ and $0.48^{+0.26}_{-0.19}$, respectively. After a thorough examination, we find that this offset cannot be attributed to sample selection effects. We also divide our data into two subsamples according to their projected radius to the center of UMi, and find that the more centrally concentrated population in a denser environment has a lower binary fraction of $0.33^{+0.30}_{-0.20}$, compared with $1.00^{+0.00}_{-0.32}$ for the subsample in more outskirts.

Qiu, Tian [Shanghai Jiao Tong Univ. (China); DESI ↗

When ancient numerical demons meet physics-informed machine learning: adjoint-based gradients for implicit differentiable modeling

Recent advances in differentiable modeling, a genre of physics-informed machine learning that trains neural networks (NNs) together with process-based equations, have shown promise in enhancing hydrological models' accuracy, interpretability, and knowledge-discovery potential. Current differentiable models are efficient for NN-based parameter regionalization, but the simple explicit numerical schemes paired with sequential calculations (operator splitting) can incur numerical errors whose impacts on models' representation power and learned parameters are not clear. Implicit schemes, however, cannot rely on automatic differentiation to calculate gradients due to potential issues of gradient vanishing and memory demand. Here we propose a “discretize-then-optimize” adjoint method to enable differentiable implicit numerical schemes for the first time for large-scale hydrological modeling. The adjoint model demonstrates comprehensively improved performance, with Kling–Gupta efficiency coefficients, peak-flow and low-flow metrics, and evapotranspiration that moderately surpass the already-competitive explicit model. Therefore, the previous sequential-calculation approach had a detrimental impact on the model's ability to represent hydrological dynamics. Furthermore, with a structural update that describes capillary rise, the adjoint model can better describe baseflow in arid regions and also produce low flows that outperform even pure machine learning methods such as long short-term memory networks. The adjoint model rectified some parameter distortions but did not alter spatial parameter distributions, demonstrating the robustness of regionalized parameterization. Despite higher computational expenses and modest improvements, the adjoint model's success removes the barrier for complex implicit schemes to enrich differentiable modeling in hydrology.

58 GEOSCIENCES↗

Radar-based Snow Property Profile Retrievals for NSA

The product contains estimated snow microphysical properties retrieved primarily from vertically-profiling radar observations using a priori constraints that are dependent on atmospheric state. The product provides data at 1-minute time resolution, including snowfall rate at the surface and vertical profiles at 300-meter resolution of snow particle size distribution parameters and snow water contents. Estimated uncertainties for the snowfall rates and snow water contents are also provided. The product is obtained using an optimal estimation retrieval in which radar forward model and a priori state characteristics are based on expected snow particle microphysical and radar scattering properties evaluated from field experiment data.

54 ENVIRONMENTAL SCIENCES↗

Wave-Plan Analysis of Unsteady Flow

An analytical method for computing unsteady flow conditions in liquid-filled flow systems is developed. The method which is called the wave plan incorporates distributed parameter and nonlinear effects including the effects of viscous resistance. The wave plan is essentially a solution synthesized from the effects of incremental step pressure pulses. The pressure pulses are generated because of incremental flow-rate changes that originate in a hydraulic system from a variety of sources, including the mechanical motion of the system structure. The pressure pulses propagate throughout the system at sonic velocity and are partially transmitted and reflected at each discontinuity. The velocity change caused by each pressure pulse is obtained from the Joukowski relation. Pressure and velocity time histories at any point in the system are obtained by a timewise summation of the contributions of the incremental pressure pulses passing that point. The analysis is presented in a form general enough to be applied to a variety of hydraulic systems. To illustrate the application of the method to a specific system, the response of a straight hydraulic line to a sinusoidal orifice-area variation of an upstream valve is computed. Both a constant-cross- section line and a tapered line are analyzed in the examples, and various nonlinear effects evaluated. Comparisons are carried out with experimental data obtained for the constant-diameter line and good agreement is shown to exist.

UNSTEADY FLOW↗