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At least 325 records · Page 18

Root Influences on Mobilization and Export of Mineral-bound Soil Organic Matter

Biogeochemical cycles within mountainous watersheds are key regulators of ecosystem carbon storage and downstream nutrient loadings, and they have shown to be particularly vulnerable to climate change impacts. Increasing temperature and persistent droughts have already dramatically changed vegetation cover across the mountainous western US, with unknown consequences for soil carbon and nutrient cycles belowground. What remains elusive is to what extent associated changes in root-soil interactions may mobilize the vast pool of organic matter (OM) that has been stabilized by associations with minerals for centuries or millennia. Although plant root-driven OM mobilization from minerals may be a central control on carbon loss and nutrient export, such mechanisms are currently missing from conceptual and numerical models. The overall objective of this Exploratory Project is to identify the biogeochemical mechanisms by which roots destabilize mineral-associated organic matter (MAOM) and the cumulative impact on carbon and nutrient fate. To accomplish this goal, we integrated well-controlled laboratory experiments with in-field measurements and a scalable modeling approach. First, we conducted model system experiments to assess the vulnerability of MAOM to exudate-mediated mechanisms. Our results show that common root exudates effectively destabilize MAOM not only through direct, ligand-driven mobilization mechanisms, but also indirect, microbially-mediated mechanisms relying on secondary metabolites and enzymes. We further found that OM bound to poorly crystalline Fe and Al (hydr)oxides is more vulnerable to exudate-induced destabilization than OM bound to more crystalline phases, particularly in response to direct, ligand-promoted mechanisms. These findings demonstrate that the stability of MAOM is not just a function of their inherent properties, but also will depend in large parts on the ability of plant roots and microbes to produce exudates capable of triggering suitable mobilization mechanisms. We further employed a well-controlled rhizobox approach, combining advanced microsensor and mass spectrometry techniques, to resolve spatiotemporal variations in the composition and availability of exudates along single growing roots of grasses. Our results show that the composition of functionally relevant exudate compounds varies at extremely short time scales, seemingly shifting from ligands such as aromatic acids around root tips to less reactive metabolites such as amino acids around mature root segments. These results suggest a prevalence of direct MAOM mobilization mechanisms around the root tip, while indirect MAOM mobilization strategies may dominate around more mature root segments. Additionally, we utilized microsensor measurements in rhizoboxes to parameterize a rhizosphere (hydro)biogeochemistry reactive transport model (eSTOMP-ROOTS). The resulting model was used to assess how root exudations affects the stability of MAOM. Model simulations show that diel pulses of root exudation are strong enough to cause oscillations in biogeochemical conditions—particularly in pH, oxygen concentrations, and microbial activity— that repeatedly disrupt MAOM. Finally, we assessed field-scale impacts of root-driven MAOM destabilization over short and long time scales. A combination of in-field incubations and field-based characterizations showed that MAOM may not only be vulnerable to seasonal variations in root activity, but also to root-driven weathering over pedogenic time scales. In sum, results from our Exploratory Award highlight the strong control plant roots exert on MAOM mobilization and, thus, on the potential for carbon and nutrient export from watersheds.

54 ENVIRONMENTAL SCIENCES↗

The Inducible Accumulation of Cell Wall-Bound p -Hydroxybenzoates Is Involved in the Regulation of Gravitropic Response of Poplar

Lignin in Populus species is acylated with p-hydroxybenzoate. Monolignol p-hydroxybenzoyltransferase 1 (PHBMT1) mediates p-hydroxybenzoylation of sinapyl alcohol, eventually leading to the modification of syringyl lignin subunits. Angiosperm trees upon gravistimulation undergo the re-orientation of their growth along with the production of specialized secondary xylem, i.e., tension wood (TW), that generates tensile force to pull the inclined stem or leaning branch upward. Sporadic evidence suggests that angiosperm TW contains relatively a high percentage of syringyl lignin and lignin-bound p-hydroxybenzoate. However, whether such lignin modification plays a role in gravitropic response remains unclear. By imposing mechanical bending and/or gravitropic stimuli to the hybrid aspens in the wild type (WT), lignin p-hydroxybenzoate deficient, and p-hydroxybenzoate overproduction plants, we examined the responses of plants to gravitropic/mechanical stress and their cell wall composition changes. We revealed that mechanical bending or gravitropic stimulation not only induced the overproduction of crystalline cellulose fibers and increased the relative abundance of syringyl lignin, but also significantly induced the expression of PHBMT1 and the increased accumulation of p-hydroxybenzoates in TW. Furthermore, we found that although disturbing lignin-bound p-hydroxybenzoate accumulation in the PHBMT1 knockout and overexpression (OE) poplars did not affect the major chemical composition shifts of the cell walls in their TW as occurred in the WT plants, depletion of p-hydroxybenzoates intensified the gravitropic curving of the plantlets in response to gravistimulation, evident with the enhanced stem secant bending angle. By contrast, hyperaccumulation of p-hydroxybenzoates mitigated gravitropic response. These data suggest that PHBMT1-mediated lignin modification is involved in the regulation of poplar gravitropic response and, likely by compromising gravitropism and/or enhancing autotropism, negatively coordinates the action of TW cellulose fibers to control the poplar wood deformation and plant growth.

59 BASIC BIOLOGICAL SCIENCES↗

The Structure of Maltooctaose-Bound Escherichia coli Branching Enzyme Suggests a Mechanism for Donor Chain Specificity

Glycogen is the primary storage polysaccharide in bacteria and animals. It is a glucose polymer linked by α-1,4 glucose linkages and branched via α-1,6-linkages, with the latter reaction catalyzed by branching enzymes. Both the length and dispensation of these branches are critical in defining the structure, density, and relative bioavailability of the storage polysaccharide. Key to this is the specificity of branching enzymes because they define branch length. Herein, we report the crystal structure of the maltooctaose-bound branching enzyme from the enterobacteria E. coli. The structure identifies three new malto-oligosaccharide binding sites and confirms oligosaccharide binding in seven others, bringing the total number of oligosaccharide binding sites to twelve. In addition, the structure shows distinctly different binding in previously identified site I, with a substantially longer glucan chain ordered in the binding site. Using the donor oligosaccharide chain-bound Cyanothece branching enzyme structure as a guide, binding site I was identified as the likely binding surface for the extended donor chains that the E. coli branching enzyme is known to transfer. Furthermore, the structure suggests that analogous loops in branching enzymes from a diversity of organisms are responsible for branch chain length specificity. Together, these results suggest a possible mechanism for transfer chain specificity involving some of these surface binding sites.

59 BASIC BIOLOGICAL SCIENCES↗

Removal of Non-Specifically Bound Proteins Using Rayleigh Waves Generated on ST-Quartz Substrates

Label-free biosensors are plagued by the issue of non-specific protein binding which negatively affects sensing parameters such as sensitivity, selectivity, and limit-of-detection. In the current work, we explore the possibility of using the Rayleigh waves in ST-Quartz devices to efficiently remove non-specifically bound proteins via acoustic streaming. A coupled-field finite element (FE) fluid structure interaction (FSI) model of a surface acoustic wave (SAW) device based on ST-Quartz substrate in contact with a liquid loading was first used to predict trends in forces related to SAW-induced acoustic streaming. Based on model predictions, it is found that the computed SAW body force is sufficient to overcome adhesive forces between particles and a surface while lift and drag forces prevent reattachment for a range of SAW frequencies. We further performed experiments to validate the model predictions and observe that the excitation of Rayleigh SAWs removed non-specifically bound (NSB) antigens and antibodies from sensing and non-sensing regions, while rinsing and blocking agents were ineffective. An amplified RF signal applied to the device input disrupted the specific interactions between antigens and their capture antibody as well. ST-quartz allows propagation of Rayleigh and leaky SH-SAW waves in orthogonal directions. Thus, the results reported here could allow integration of three important biosensor functions on a single chip, i.e., removal of non-specific binding, mixing, and sensing in the liquid phase.

59 BASIC BIOLOGICAL SCIENCES↗

Tight Bound on the Neutron Star Radius with Quasiperiodic Oscillations in Short Gamma-Ray Bursts

Abstract Quasiperiodic oscillations (QPOs) have been recently discovered in the short gamma-ray bursts (GRBs) 910711 and 931101B. Their frequencies are consistent with those of the quasiradial and quadrupolar oscillations of binary neutron star (BNS) merger remnants, as obtained in numerical relativity simulations. These simulations reveal quasi-universal relations between the remnant oscillation frequencies and the tidal coupling constant of the binaries. Under the assumption that the observed QPOs are due to these postmerger oscillations, we use the frequency–tide relations in a Bayesian framework to infer the source redshift, as well as the chirp mass and the binary tidal deformability of the BNS progenitors for GRBs 910711 and 931101B. We further use this inference to estimate bounds on the mass–radius relation for neutron stars. By combining the estimates from the two GRBs, we find a 68% credible range R 1.4 = 12.4 8 − 0.40 + 0.41 km for the radius of a neutron star with mass M = 1.4 M ⊙ , which is one of the tightest bounds to date.

Guedes, Victor↗

Upper Bound on Parity Breaking Scale for Doublet WIMP Dark Matter

We consider weakly interacting massive particle (WIMP) dark matter in a Parity solution to the strong CP problem. The WIMP phenomenology can be drastically affected by the presence of Parity partners of the WIMP and electroweak gauge bosons. We focus on a Parity extension of $SU(2)_L$-doublet fermion dark matter, identify the viable parameter space, and derive the predictions of the theory. We find that the Parity symmetry breaking scale is bounded from above, with the bound given by $25-60$ TeV, depending on whether or not dark matter and its Parity partner coannihilate with each other. The High-Luminosity Large Hadron Collider, future colliders, and direct and indirect detection experiments can probe the parameter space further, with correlated signal rates.

Baldwin, Matthew J. [Chicago U.; Chicago U., KICP]↗

Studies in Perturbation Theory. XI. Lower Bounds to Energy Eigenvalues, Ground State, and Excited States

The bracketing theorem in the partitioning technique for solving the Schrödinger equation may be used in principle to determine upper and lower bounds to energy eigenvalues. Practical lower bounds of any accuracy desired may be evaluated by utilizing the properties of ``inner projections'' on finite manifolds in the Hilbert space. The method is here applied to the ground state and excited states of a Hamiltonian H=H(sub 0)+V having a positive definite perturbation V. Even if inspiration is derived from the method of intermediate Hamiltonians, the final results are of bracketing type and independent of this approach. The method is numerically illustrated in some accompanying papers.

Loewdin, Per-Olov↗

A note on AFLs and bounded erasing

F-bounded erasing operator in abstract family of language for mapping, applying to families defined by tape-bounded Turing acceptors

Book, R. V.↗

Interpretation of dispersion relations for bounded systems.

Treatment of the problem of constructing normal modes for an arbitrarily bounded system from roots of the linear dispersion relation D(omega, k) = 0 for the corresponding infinite or periodically bounded system. For a system described by continuous macroscopic variables, and of general cylindrical form, each transverse eigenmode gives rise to a set of axial normal modes constructed from a pair of dominant roots of D = 0 satisfying the boundary conditions which are characterized by complex reflection coefficients for the dominant waves. The implications of the results for the interpretation of experiments on plasma waves and instabilities on finite cylinders are discussed, with particular reference to the effects of end-plate damping and axial current on Q-machines.

Rognlien, T. D.↗

Bounding filter - A simple solution to lack of exact a priori statistics.

Wiener and Kalman-Bucy estimation problems assume that models describing the signal and noise stochastic processes are exactly known. When this modeling information, i.e., the signal and noise spectral densities for Wiener filter and the signal and noise dynamic system and disturbing noise representations for Kalman-Bucy filtering, is inexactly known, then the filter's performance is suboptimal and may even exhibit apparent divergence. In this paper a system is designed whereby the actual estimation error covariance is bounded by the covariance calculated by the estimator. Therefore, the estimator obtains a bound on the actual error covariance which is not available, and also prevents its apparent divergence.

Nahi, N. E.↗

S-matrix method for the numerical determination of bound states.

A rapid numerical technique for the determination of bound states of a partial-wave-projected Schroedinger equation is presented. First, one needs to integrate the equation only outwards as in the scattering case, and second, the number of trials necessary to determine the eigenenergy and the corresponding eigenfunction is considerably less than in the usual method. As a nontrivial example of the technique, bound states are calculated in the exchange approximation for the e-/He+ system and l equals 1 partial wave.

Bhatia, A. K.↗

Design procedure for satisfying time domain bounds for nonminimum-phase systems

Design techniques are presented applicable to nonminimum-phase systems. They are designed to handle plants with one right-half-plane zero which may vary, and any other variation of the plant parameters within known limits. The specifications that must be designed are given as a set of step response bounds in the time domain. A completed design will yield responses that stay within the time domain bounds at all times and utilize the entire region of allowed variation.

Ostheimer, W. D.↗

An improved upper bound on the block coding error exponent for binary input discrete memoryless channels

For coded telemetry systems it is important to know the tradeoff between the error probability and the complexity of implementation. For systems using block codes, the block coding error exponent is a good way to estimate this tradeoff. The new upper bounds on the minimum distance of binary codes result in improved upper bounds on the coding error exponents for binary input memoryless channels.

Mceliece, R. J.↗