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At least 325 records · Page 18

The ATLAS experiment at the CERN Large Hadron Collider: a description of the detector configuration for Run 3

The ATLAS detector is installed in its experimental cavern at Point 1 of the CERN Large Hadron Collider. During Run 2 of the LHC, a luminosity of ℒ = 2 × 10 34 cm -2 s -1 was routinely achieved at the start of fills, twice the design luminosity. For Run 3, accelerator improvements, notably luminosity levelling, allow sustained running at an instantaneous luminosity of ℒ = 2 × 10 34 cm -2 s -1 , with an average of up to 60 interactions per bunch crossing. The ATLAS detector has been upgraded to recover Run 1 single-lepton trigger thresholds while operating comfortably under Run 3 sustained pileup conditions. A fourth pixel layer 3.3 cm from the beam axis was added before Run 2 to improve vertex reconstruction and b-tagging performance. New Liquid Argon Calorimeter digital trigger electronics, with corresponding upgrades to the Trigger and Data Acquisition system, take advantage of a factor of 10 finer granularity to improve triggering on electrons, photons, taus, and hadronic signatures through increased pileup rejection. The inner muon endcap wheels were replaced by New Small Wheels with Micromegas and small-strip Thin Gap Chamber detectors, providing both precision tracking and Level-1 Muon trigger functionality. Trigger coverage of the inner barrel muon layer near one endcap region was augmented with modules integrating new thin-gap resistive plate chambers and smaller-diameter drift-tube chambers. Tile Calorimeter scintillation counters were added to improve electron energy resolution and background rejection. Upgrades to Minimum Bias Trigger Scintillators and Forward Detectors improve luminosity monitoring and enable total proton-proton cross section, diffractive physics, and heavy ion measurements. These upgrades are all compatible with operation in the much harsher environment anticipated after the High-Luminosity upgrade of the LHC and are the first steps towards preparing ATLAS for the High-Luminosity upgrade of the LHC. This paper describes the Run 3 configuration of the ATLAS detector.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Beam-induced backgrounds measured in the ATLAS detector during local gas injection into the LHC beam vacuum

Inelastic beam-gas collisions at the Large Hadron Collider (LHC), within a few hundred metres of the ATLAS experiment, are known to give the dominant contribution to beam backgrounds. These are monitored by ATLAS with a dedicated Beam Conditions Monitor (BCM) and with the rate of fake jets in the calorimeters. These two methods are complementary since the BCM probes backgrounds just around the beam pipe while fake jets are observed at radii of up to several metres. In order to quantify the correlation between the residual gas density in the LHC beam vacuum and the experimental backgrounds recorded by ATLAS, several dedicated tests were performed during LHC Run 2. Local pressure bumps, with a gas density several orders of magnitude higher than during normal operation, were introduced at different locations. The changes of beam-related backgrounds, seen in ATLAS, are correlated with the local pressure variation. In addition the rates of beam-gas events are estimated from the pressure measurements and pressure bump profiles obtained from calculations. Using these rates, the efficiency of the ATLAS beam background monitors to detect beam-gas events is derived as a function of distance from the interaction point. These efficiencies and characteristic distributions of fake jets from the beam backgrounds are found to be in good agreement with results of beam-gas simulations performed with theFluka Monte Carlo programme.

43 PARTICLE ACCELERATORS↗

The ATLAS trigger system for LHC Run 3 and trigger performance in 2022

The ATLAS trigger system is a crucial component of the ATLAS experiment at the LHC. It is responsible for selecting events in line with the ATLAS physics programme. This paper presents an overview of the changes to the trigger and data acquisition system during the second long shutdown of the LHC, and shows the performance of the trigger system and its components in the proton-proton collisions during the 2022 commissioning period as well as its expected performance in proton-proton and heavy-ion collisions for the remainder of the third LHC data-taking period (2022–2025).

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Accuracy versus precision in boosted top tagging with the ATLAS detector

The identification of top quark decays where the top quark has a large momentum transverse to the beam axis, known as top tagging , is a crucial component in many measurements of Standard Model processes and searches for beyond the Standard Model physics at the Large Hadron Collider. Machine learning techniques have improved the performance of top tagging algorithms, but the size of the systematic uncertainties for all proposed algorithms has not been systematically studied. This paper presents the performance of several machine learning based top tagging algorithms on a dataset constructed from simulated proton-proton collision events measured with the ATLAS detector at $\sqrt{s}$ = 13 TeV. The systematic uncertainties associated with these algorithms are estimated through an approximate procedure that is not meant to be used in a physics analysis, but is appropriate for the level of precision required for this study. The most performant algorithms are found to have the largest uncertainties, motivating the development of methods to reduce these uncertainties without compromising performance. To enable such efforts in the wider scientific community, the datasets used in this paper are made publicly available.

47 OTHER INSTRUMENTATION↗

Sensor response and radiation damage effects for 3D pixels in the ATLAS IBL Detector

Pixel sensors in 3D technology equip the outer ends of the staves of the Insertable B Layer (IBL), the innermost layer of the ATLAS Pixel Detector, which was installed before the start of LHC Run 2 in 2015. 3D pixel sensors are expected to exhibit more tolerance to radiation damage and are the technology of choice for the innermost layer in the ATLAS tracker upgrade for the HL-LHC programme. While the LHC has delivered an integrated luminosity of ≃ 235 fb -1 since the start of Run 2, the 3D sensors have received a non-ionising energy deposition corresponding to a fluence of ≃ 8.5 × 10 14 1 MeV neutron-equivalent cm -2 averaged over the sensor area. This paper presents results of measurements of the 3D pixel sensors' response during Run 2 and the first two years of Run 3, with predictions of its evolution until the end of Run 3 in 2025. Data are compared with radiation damage simulations, based on detailed maps of the electric field in the Si substrate, at various fluence levels and bias voltage values. These results illustrate the potential of 3D technology for pixel applications in high-radiation

47 OTHER INSTRUMENTATION↗

Expected tracking performance of the ATLAS Inner Tracker at the High-Luminosity LHC

The high-luminosity phase of LHC operations (HL-LHC), will feature a large increase in simultaneous proton-proton interactions per bunch crossing up to 200, compared with a typical leveling target of 64 in Run 3. Such an increase will create a very challenging environment in which to perform charged particle trajectory reconstruction, a task crucial for the success of the ATLAS physics program, and will exceed the capabilities of the current ATLAS Inner Detector (ID). A new all-silicon Inner Tracker (ITk) will replace the current ID in time for the start of the HL-LHC. To ensure successful use of the ITk capabilities in Run 4 and beyond, the ATLAS tracking software has been successfully adapted to achieve state-of-the-art track reconstruction in challenging high-luminosity conditions with the ITk detector. This paper presents the expected tracking performance of the ATLAS ITk based on the latest available developments since the ITk technical design reports.

47 OTHER INSTRUMENTATION↗

Configuration, Performance, and Commissioning of the ATLAS b-jet Triggers for the 2022 and 2023 LHC data-taking periods

In 2022 and 2023, the Large Hadron Collider produced approximately two billion hadronic interactions each second from bunches of protons that collide at a rate of 40 MHz. The ATLAS trigger system is used to reduce this rate to a few kHz for recording. Selections based on hadronic jets, their energy, and event topology reduce the rate to 𝒪(10) kHz while maintaining high efficiencies for important signatures resulting in b-quarks, but to reach the desired recording rate of hundreds of Hz, additional real-time selections based on the identification of jets containing b-hadrons (b-jets) are employed to achieve low thresholds on the jet transverse momentum at the High-Level Trigger. The configuration, commissioning, and performance of the real-time ATLAS b-jet identification algorithms for the early LHC Run 3 collision data are presented. These recent developments provide substantial gains in signal efficiency for critical signatures; for the Standard Model production of Higgs boson pairs, a 50% improvement in selection efficiency is observed in final states with four b-quarks or two b-quarks and two hadronically decaying τ-leptons.

47 OTHER INSTRUMENTATION↗

CO 2 fertilization of crops offsets yield losses due to future surface ozone damage and climate change

Tropospheric ozone (O 3 ) is harmful to plant productivity and negatively impacts crop yields. O3 concentrations are projected to decrease globally in the optimistic Representative Concentration Pathway of 2.6 W m –2 (RCP2.6) but increase globally following the high-emission scenario under the RCP8.5, with substantial implications for global food security. The damaging effect of O 3 on future crop yield is affected by CO 2 fertilization and climate change, and their interactions for RCP scenarios have yet to be quantified. In this study, we used the Joint UK Land Environment Simulator modified to include crops (JULES-crop) to quantify the impacts, and relative importance of present-day and future O3, CO 2 concentration and meteorology on crop production at the regional scale until 2100 following RCP2.6 and RCP8.5 scenarios. We focus on eight major crop-producing regions that cover the production of wheat, soybean, maize, and rice. Our results show that CO 2 alone has the largest effect on regional yields, followed by climate and O 3 . However, the CO 2 fertilization effect is offset by the negative impact of tropospheric O 3 in regions with high O 3 concentrations, such as South Asia and China. Simulated crop yields in 2050 were compared with Food and Agriculture Organisation (FAO) statistics to investigate the differences between a socioeconomic and a biophysical process-based approach. Results showed that FAO estimates are closer to our JULES-crop RCP8.5 scenario. This study demonstrates that air pollution could be the biggest threat to future food production and highlights an urgent policy need to mitigate the threat of climate change and O 3 pollution on food security.

54 ENVIRONMENTAL SCIENCES↗

Simultaneous energy and mass calibration of large-radius jets with the ATLAS detector using a deep neural network

The energy and mass measurements of jets are crucial tasks for the Large Hadron Collider experiments. This paper presents a new calibration method to simultaneously calibrate these quantities for large-radius jets measured with the ATLAS detector using a deep neural network (DNN). To address the specificities of the calibration problem, special loss functions and training procedures are employed, and a complex network architecture, which includes feature annotation and residual connection layers, is used. The DNN-based calibration is compared to the standard numerical approach in an extensive series of tests. The DNN approach is found to perform significantly better in almost all of the tests and over most of the relevant kinematic phase space. In particular, it consistently improves the energy and mass resolutions, with a 30% better energy resolution obtained for transverse momenta $p$ T > $500$ GeV.

47 OTHER INSTRUMENTATION↗

Post-composing ontology terms for efficient phenotyping in plant breeding

Abstract Ontologies are widely used in databases to standardize data, improving data quality, integration, and ease of comparison. Within ontologies tailored to diverse use cases, post-composing user-defined terms reconciles the demands for standardization on the one hand and flexibility on the other. In many instances of Breedbase, a digital ecosystem for plant breeding designed for genomic selection, the goal is to capture phenotypic data using highly curated and rigorous crop ontologies, while adapting to the specific requirements of plant breeders to record data quickly and efficiently. For example, post-composing enables users to tailor ontology terms to suit specific and granular use cases such as repeated measurements on different plant parts and special sample preparation techniques. To achieve this, we have implemented a post-composing tool based on orthogonal ontologies providing users with the ability to introduce additional levels of phenotyping granularity tailored to unique experimental designs. Post-composed terms are designed to be reused by all breeding programs within a Breedbase instance but are not exported to the crop reference ontologies. Breedbase users can post-compose terms across various categories, such as plant anatomy, treatments, temporal events, and breeding cycles, and, as a result, generate highly specific terms for more accurate phenotyping.

Mathematical & Computational Biology↗

UMLS users and uses: a current overview

Abstract The US National Library of Medicine regularly collects summary data on direct use of Unified Medical Language System (UMLS) resources. The summary data sources include UMLS user registration data, required annual reports submitted by registered users, and statistics on downloads and application programming interface calls. In 2019, the National Library of Medicine analyzed the summary data on 2018 UMLS use. The library also conducted a scoping review of the literature to provide additional intelligence about the research uses of UMLS as input to a planned 2020 review of UMLS production methods and priorities. 5043 direct users of UMLS data and tools downloaded 4402 copies of the UMLS resources and issued 66 130 951 UMLS application programming interface requests in 2018. The annual reports and the scoping review results agree that the primary UMLS uses are to process and interpret text and facilitate mapping or linking between terminologies. These uses align with the original stated purpose of the UMLS.

Amos, Liz↗

Potential pathogenicity determinants identified from structural proteomics of SARS-CoV and SARS-CoV-2

Despite SARS-CoV and SARS-CoV-2 being equipped with highly similar protein arsenals, the corresponding zoonoses have spread among humans at extremely different rates. The specific characteristics of these viruses that led to such distinct outcomes remain unclear. Here, we apply proteome-wide comparative structural analysis aiming to identify the unique molecular elements in the SARS-CoV-2 proteome that may explain the differing consequences. By combining protein modeling and molecular dynamics simulations, we suggest non-conservative substitutions in functional regions of the spike glycoprotein (S), nsp1, and nsp3 that are contributing to differences in virulence. Particularly, we explain why the substitutions at the receptor-binding domain of S affect the structure-dynamics behavior in complexes with putative host receptors. Conservation of functional protein regions within the two taxa is also noteworthy. We suggest that the highly conserved main protease, nsp5, of SARS-CoV and SARS-CoV-2 is part of their mechanism of circumventing the host interferon antiviral response. Overall, most substitutions occur on the protein surfaces and may be modulating their antigenic properties and interactions with other macromolecules. Our results imply that the striking difference in the pervasiveness of SARS-CoV-2 and SARS-CoV among humans seems to significantly derive from molecular features that modulate the efficiency of viral particles in entering the host cells and blocking the host immune response.

59 BASIC BIOLOGICAL SCIENCES↗

Rare ribosomal RNA sequences from archaea stabilize the bacterial ribosome

The ribosome serves as the universally conserved translator of the genetic code into proteins and supports life across diverse temperatures ranging from below freezing to above 120°C. Ribosomes are capable of functioning across this wide range of temperatures even though the catalytic site for peptide bond formation, the peptidyl transferase center, is nearly universally conserved. Here we find that Thermoproteota, a phylum of thermophilic Archaea, substitute cytidine for uridine at large subunit rRNA positions 2554 and 2555 (Escherichia coli numbering) in the A loop, immediately adjacent to the binding site for the 3'-end of A-site tRNA. We show by cryo-EM that E. coli ribosomes with uridine to cytidine mutations at these positions retain the proper fold and post-transcriptional modification of the A loop. Additionally, these mutations do not affect cellular growth, protect the large ribosomal subunit from thermal denaturation, and increase the mutational robustness of nucleotides in the peptidyl transferase center. This work identifies sequence variation across archaeal ribosomes in the peptidyl transferase center that likely confers stabilization of the ribosome at high temperatures and develops a stable mutant bacterial ribosome that can act as a scaffold for future ribosome engineering efforts.

59 BASIC BIOLOGICAL SCIENCES↗

Search for electroweak-scale dijet resonances using trigger-level analysis with the ATLAS detector in 132 fb −1 of 𝑝⁢𝑝 collisions at $\sqrt{𝑠}$ = 13 TeV

This article reports on a search for dijet resonances using 132 fb −1 of 𝑝⁢𝑝 collision data recorded at $\sqrt{𝑠}$ = 13 TeV by the ATLAS detector at the Large Hadron Collider. The search is performed solely on jets reconstructed within the ATLAS trigger to overcome bandwidth limitations imposed on conventional single-jet triggers, which would otherwise reject data from decays of sub-TeV dijet resonances. Collision events with two jets satisfying transverse momentum thresholds of 𝑝 T ≥ 85 GeV and jet rapidity separation of |𝑦*| <0.6 are analysed for dijet resonances with invariant masses from 375 to 1800 GeV. A data-driven background estimate is used to model the dijet mass distribution from multijet processes. No significant excess above the expected background is observed. Upper limits are set at 95% confidence level on coupling values for a benchmark leptophobic axial-vector 𝑍′ model and on the production cross section for a new resonance contributing a Gaussian-distributed line-shape to the dijet mass distribution.

hadron colliders↗

Observation of the decays 𝐵 + → Σ 𝑐 ⁢(2455) ++ $\bar{Ξ}^-_c$ and 𝐵 0 → Σ 𝑐 ⁢(2455) 0⁢ $\bar{Ξ}^0_𝑐$

We report the first observation of the two-body baryonic decays 𝐵 + → Σ 𝑐 ⁢(2455) ++ $\bar{Ξ}^-_c$ and 𝐵 0 → Σ 𝑐 ⁢(2455) 0⁢ $\bar{Ξ}^0_𝑐$ with significances of 7.3⁢𝜎 and 6.2⁢𝜎, respectively, including statistical and systematic uncertainties. The branching fractions are measured to be ℬ⁡(𝐵 + → Σ 𝑐 ⁢(2455) ++ $\bar{Ξ}^-_c$) = (5.74 ± 1.11 ± 0.4⁢2$^{+2.47}_{−1.53}$) ×10 −4 and ℬ⁡(𝐵 0 → Σ 𝑐 ⁢(2455) 0⁢ $\bar{Ξ}^0_𝑐$) = (4.83 ± 1.12 ± 0.3⁢7$^{+0.72}_{−0.60}$) ×10 −4 . The first and second uncertainties are statistical and systematic, respectively, while the third ones arise from the absolute branching fractions of $\bar{Ξ}^-_c$ or $\bar{Ξ}^0_𝑐$ decays. The data samples used for this analysis have integrated luminosities of 711 fb −1 and 365 fb −1 , and were collected at the ϒ⁡(4⁢𝑆) resonance by the Belle and Belle II detectors operating at the KEKB and SuperKEKB asymmetric-energy 𝑒 + ⁢𝑒 − colliders, respectively.

branching fraction↗

Weakly supervised anomaly detection for resonant new physics in the dijet final state using proton-proton collisions at $\sqrt{s}$ = 13 TeV with the ATLAS detector

An anomaly detection search for narrow-width resonances beyond the Standard Model that decay into a pair of jets is presented. The search is based on 139 fb −1 of proton-proton collisions at $\sqrt{s}$ = 13 TeV recorded during 2015–2018 with the ATLAS detector at the Large Hadron Collider. The analysis is optimized without a particular signal model and aims to be sensitive to a broad range of new physics. It uses two different machine learning strategies to estimate the background in different signal regions. In each region, a weakly supervised classifier is trained to distinguish this background model from data. The analysis focuses on events with high transverse momentum jets reconstructed as large-radius jets. The mass and substructure of these jets are used as inputs to the classifiers. After a classifier-based selection, the distribution of the invariant mass of the two jets is used to search for potential local excesses. The model-independent results of both the anomaly detection methods show no signs of significant local excesses. In addition to model-independent results, a representative set of signal models is injected into the data, and the sensitivity of the methods to these scenarios is reported.

Aad, G. [Aix-Marseille Université] (ORCID:00000002↗

Search for a Dark Higgs Boson Produced in Association with Inelastic Dark Matter at the Belle II Experiment

Inelastic dark matter models that have two dark matter particles and a massive dark photon can reproduce the observed relic dark matter density without violating cosmological limits. The mass splitting between the two dark matter particles 𝜒 1 and 𝜒 2 , with 𝑚⁡(𝜒 2 ) >𝑚⁡(𝜒 1 ), is induced by a dark Higgs field and a corresponding dark Higgs boson ℎ′. We present a search for dark matter in events with two vertices, at least one of which must be displaced from the interaction region, and missing energy. Using a 365 fb −1 data sample collected at Belle II, which operates at the SuperKEKB 𝑒 + ⁢𝑒 − collider, we observe no evidence for a signal. We set upper limits on the product of the production cross section 𝜎⁡(𝑒 + ⁢𝑒 − → ℎ′⁡𝜒 1 ⁢𝜒 2 ), and the product of branching fractions ℬ⁡(𝜒 2 → 𝜒 1⁢ 𝑒 + ⁢𝑒 − ) ×ℬ⁡(ℎ′ → 𝑥 + ⁢𝑥 − ), where 𝑥 + ⁢𝑥 − indicates 𝜇 + ⁢𝜇 − , 𝜋 + ⁢𝜋 − , or 𝐾 + ⁢𝐾 − , as functions of ℎ′ mass and lifetime at the level of 10 −1 fb. We set model-dependent upper limits on the dark Higgs mixing angle at the level of 10 −5 and on the dark photon kinetic mixing parameter at the level of 10 −3 . This is the first search for dark Higgs bosons in association with inelastic dark matter.

dark matter↗

Measurement of the 𝐶⁢𝑃 asymmetry in 𝐷 + → 𝜋 + ⁢𝜋 0 decays at Belle II

We measure the 𝐶⁢𝑃 asymmetry in 𝐷 + → 𝜋 + ⁢𝜋 0 decays reconstructed in 𝑒 + ⁢𝑒 − collisions at the Belle II experiment using a dataset corresponding to an integrated luminosity of 428 fb −1 . A control sample of 𝐷 + → 𝜋 + ⁢𝐾$^0_𝑆$ decays is used to correct for detection and production asymmetries. The result 𝐴 𝐶⁢𝑃 ⁡(𝐷 + → 𝜋 + ⁢𝜋 0 ) = (−1.8 ± 0.9 ± 0.1)%, where the first uncertainty is statistical and the second systematic, is the most precise determination to date. It agrees with the prediction of 𝐶⁢𝑃 symmetry from the standard model and with results of previous measurements.

CP violation↗