Utility of airborne electromagnetic profiler data for determining water depths and characterizing coastal sediments and marsh soils
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Pelletier, R. E.↗
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Results for “soil depth”
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Metagenome-assembled genome distribution and key functionality highlight importance of aerobic metabolism in Svalbard permafrost
Permafrost underlies a large portion of the land in the Northern Hemisphere. It is proposed to be an extreme habitat and home for cold-adaptive microbial communities. Upon thaw permafrost is predicted to exacerbate increasing global temperature trend, where awakening microbes decompose millennia old carbon stocks. Yet our knowledge on composition, functional potential and variance of permafrost microbiome remains limited. In this study, we conducted a deep comparative metagenomic analysis through a 2 m permafrost core from Svalbard, Norway to determine key permafrost microbiome in this climate sensitive island ecosystem. To do so, we developed comparative metagenomics methods on metagenomic-assembled genomes (MAG). We found that community composition in Svalbard soil horizons shifted markedly with depth: the dominant phylum switched from Acidobacteria and Proteobacteria in top soils (active layer) to Actinobacteria, Bacteroidetes, Chloroflexi and Proteobacteria in permafrost layers. Key metabolic potential propagated through permafrost depths revealed aerobic respiration and soil organic matter decomposition as key metabolic traits. We also found that Svalbard MAGs were enriched in genes involved in regulation of ammonium, sulfur and phosphate. Here, we provide a new perspective on how permafrost microbiome is shaped to acquire resources in competitive and limited resource conditions of deep Svalbard soils.
59 BASIC BIOLOGICAL SCIENCES↗
Aqueous Alteration on Mars
The occurrence of extensive valley networks and layered deposits of phyllosilicates and sulfates during the late Noachian/Hesperian periods (approx. 3-4 Gyrs) indicates a past martian climate that was capable of maintaining liquid water at the surface. The planet’s climate drastically changed after these early “episodes” of water to a drier and colder environment during the Amazonian period (past 3.0 Gyrs). The objective of this paper is to describe aqueous alteration/weathering scenarios on Mars based on observations returned by rover and lander missions. The chemistry of most outcrops, rocks, and “soils” that have interacted with water has not been extensively changed from average Mars crustal basaltic composition. Little chemical variation suggests closed hydrologic systems were prominent on early Mars and/or the water/rock ratios were low. Open hydrologic systems occur at local scales, e.g., high Si and Ti rocks and “soil” deposits around a volcanic feature in Gusev crater. Geochemical and mineralogical indicators for aqueous alteration include jarosite and other Fe-sulfates at several locations suggesting acid-sulfate alteration conditions. High Si and Ti rocks, sediments, and “soil” deposits are consistent with basaltic residues extenively leached by extremely acidic fluids. Variations in the Fe/Mn ratio of fracture veins infilled with sulfate-rich materials suggest changes in redox and/or pH conditions of the migrating fluids. The increase of nanophase iron oxides and salts with depth in several “soil” pits escavated by the Spirit rover’s wheel in Gusev crater suggests the translocation/mobolization of these phases by liquid water. This “pedogenic” process is the result of limited water movement through the surface sediments during the Amazonian period; however, it is likely that paleosols exist on Mars that formed during the early “wetter” history of the planet. Soil scientists have the opportunity to continue to (and should) be involved in the exploration of the Red planet.
Ming, Douglas W.↗
Evaluation of a pneumatic Martian soil sampler concept
The pneumatic soil sampler concept was successfully demonstrated by penetrating a Martian simulant soil to a depth of 2 meters. Working gas pressure, composition, and pulsing were evaluated with the objective of minimizing gas usage. Also, the probe penetration force was investigated with the objective of minimizing probe weight. Gas and probe penetration force, while not yet optimized, are within the range which make the soil sampler concept feasible. While the tests described in this report did not answer all the questions and address all the variables associated with pneumatic soil sampling, valuable data experience and knowledge were gained which can be used to further develop the concept.
Schaefer, John L.↗
Phosphorus availability and leaching losses in annual and perennial cropping systems in an upper US Midwest landscape
Abstract Excessive phosphorus (P) applications to croplands can contribute to eutrophication of surface waters through surface runoff and subsurface (leaching) losses. We analyzed leaching losses of total dissolved P (TDP) from no-till corn, hybrid poplar ( Populus nigra X P. maximowiczii ), switchgrass ( Panicum virgatum ), miscanthus ( Miscanthus giganteus ), native grasses, and restored prairie, all planted in 2008 on former cropland in Michigan, USA. All crops except corn (13 kg P ha −1 year −1 ) were grown without P fertilization. Biomass was harvested at the end of each growing season except for poplar. Soil water at 1.2 m depth was sampled weekly to biweekly for TDP determination during March–November 2009–2016 using tension lysimeters. Soil test P (0–25 cm depth) was measured every autumn. Soil water TDP concentrations were usually below levels where eutrophication of surface waters is frequently observed (> 0.02 mg L −1 ) but often higher than in deep groundwater or nearby streams and lakes. Rates of P leaching, estimated from measured concentrations and modeled drainage, did not differ statistically among cropping systems across years; 7-year cropping system means ranged from 0.035 to 0.072 kg P ha −1 year −1 with large interannual variation. Leached P was positively related to STP, which decreased over the 7 years in all systems. These results indicate that both P-fertilized and unfertilized cropping systems may leach legacy P from past cropland management.
54 ENVIRONMENTAL SCIENCES↗
A Spatially Coherent Global Soil Moisture Product with Improved Temporal Resolution
Global soil moisture products that are completely independent of any type of ancillary data and solely rely on satellite observations are presented. Additionally, we further develop an existing downscaling technique that enhances the spatial resolution of such products to approximately 11 km. These products are based on internal modules of the Land Parameter Retrieval Model (LPRM), an algorithm that uses the radiative transfer equation to link soil moisture, vegetation optical depth and land surface temperature to observed brightness temperatures. The soil moisture product that is independent of any type of ancillary data uses the internally calculated dielectric constant as a soil moisture proxy. This data product is not influenced by errors associated with coarse-scale global soil property maps or by any other type of forcing (e.g. re-analysis) data and is therefore solely based on satellite microwave observations. The second step builds upon recent developments to increase the spatial resolution of the LPRM retrievals using a smoothing filter downscaling method. With this method we can attain a spatial resolution that can be more useful at the scale of local and regional hydrological studies as well. The steps presented in this paper were applied to observations from the Advanced Microwave Scanning Radiometer-Earth Observing System (AMSR-E). The newly derived data sets were validated using ground-based observations from the International Soil Moisture Network (ISMN). The internally calculated dielectric constant product results in significantly more days with valid retrievals than the original soil moisture data products, in particular over arid regions. The dielectric constant product resulted in similar correlations with in situ data as the original soil moisture data product. Together, these findings demonstrate the usefulness of this new dielectric constant product for the hydrological modeling community and climate studies. A case study on the Australian Fitzroy catchment demonstrated that the downscaled data product has a more detailed spatial description of soil moisture, especially during wet and dry conditions with more pronounced dry and wet regions within the catchment. The increased resolution data products could therefore improve runoff predictions and this study demonstrated the potential added value of a transitioning from a spatial resolution of 56 km toward a higher resolution of 11 km. The hydrological implications of these newly developed data records are not only linked to AMSR-E satellite data, but also to the next generation Soil Moisture Active and Passive (SMAP) mission where a 9 km spatial resolution is the target resolution for satellite soil moisture products. The new data products will not replace the current LPRM products, but will be added to the existing array of data products and will become publicly available through our data portals.
spatial↗
Spectral Monitoring of Volatiles During Drilling into Frozen Lunar Simulant
NASA's Resource Prospector (RP) project intends to characterize the 3D distribution of volatiles in permanently shadowed regions at the lunar poles. One RP remote sensing instrument is a near-infrared spectrometer with an associated camera and radiometer, called the Near-InfraRed Volatile Spectrometer System (NIRVSS). In May 2016, NIRVSS, a Honeybee Robotics drill, and an Inficon mass spectrometer were placed in a vacuum chamber at Glenn Research Center. Also inside was a tube (1.2 m high x 25 cm diameter) filled with lunar simulant NU-LHT-3M, initially doped with a homogeneous water abundance of ~5%, chilled to cryogenic temperatures and exposed to a vacuum (~10e-6 Torr). During drilling, the NIRVSS instruments observed the cuttings pile as subsurface materials were emplaced on the surface. Spectral features associated with water ice, near 2000 and 3000 nm, were measured by the spectrometer during drilling. The spectral data documents development of a desiccated soil layer in the tube down to ~25-30 cm (confirmed by post-test soil analyses), formed during the initial pump down to vacuum. Drilling occurred in 10 cm segments, with the drill stem extracted and flutes brushed after each 10 cm depth. One exception to this was the 40 cm depth segment where the soil was delivered to a sample capture mechanism, and sealed for post-test analyses. To ~30 cm depth the greatest 2000 and 3000 nm signatures were associated with brushing of the drill flutes above the surface. At depths >40 cm the strongest ice signatures were associated with the drill clearing soil from the existing hole, or beginning to encounter new material. For these greater depths, brushing the flutes after extraction produced much weaker ice signatures than for shallower depths. This suggests that the soil may remain trapped in the exit funnel and is not emplaced on the surface. After each event creating strong ice signatures, these signatures decreased to near background levels in 5 minutes or less, due to surface exposure to vacuum.
lunar poles↗
Spatial characterization of acid rain stress in Canadian Shield Lakes
An analysis was performed to interpret the spatial aspects of lake acidification. Three types of relationships were investigated based upon the August to May seasonal scene pairing. In the first type of analysis ANOVA was used to examine the mean Thematic Mapper band one count by ecophysical strata. The primary difference in the two ecophysical strata is the soil type and depth over the underlying bedrock. Examination of the August to May difference values for TM band one produced similar results. Group A and B strata were the same as above. The third type of analysis examined the relationship between values of the August to May difference from polygons which have similar ecophysical properties with the exception of sulfate deposition. For this case lakes were selected from units with sandy soils over granitic rock types and the sulfate deposition was 1.5 or 2.5 g/sq m/yr.
Tanis, Fred J.↗
C fluxes from incubations of California upland soil with and without synthetic iron (hydr)oxide associations
There is a growing understanding that interactions with soil mineral phases contribute to the accumulation and retention of otherwise degradable organic matter in soils and sediments. However, the bioavailability of organic compounds in mineral-organic-associations, especially under varying environmental conditions is not well known. To assess the impact of mineral association and warming on the decomposition of an easily respirable organic substrate (glucose), we conducted a series of laboratory incubations at different temperatures with field-collected soils from 10 to 20 cm, 50–60 cm, and 80–90 cm depth at the Blodgett Forest Research Station. We added 13C-labeled glucose either directly to native soil or sorbed to one of two synthetic iron (hydr)oxide phases (goethite and ferrihydrite) that differ in crystallinity and affinity for sorbing glucose. We incubated the soils at 25 deg C. This dataset comprises the added glucose C and the cumulative fluxes over 72 and 1896 hours. We found that: (1) association with the Fe (hydr)oxide minerals reduced the decomposition rate of glucose by > 99.5% relative to rate of decomposition for free glucose in soil; (2) the respiration rate per gram carbon did not differ appreciably with depth, suggesting a similar degree of decomposability for native C across depths and that under the incubation conditions total carbon availability represents the principal limitation on respiration under these conditions as opposed to reduced abundance of decomposers or moisture and oxygen limitations; (3) addition of free glucose enhanced native carbon respiration at all soil depths with the largest effect at 50–60 cm; (4) in general respiration of the organo-mineral complex (glucose and iron-(hydr)oxide) was less temperature sensitive than was respiration of native carbon; (5) the addition of organic free mineral decreased the rate of soil respiration in the intermediate 50–60 cm depth soil. The results emphasize the key role of MOAs in regulating the fluxes of carbon from soils to the atmosphere and in turn the stocks of soil carbon.This dataset lists the glucose additions made to soils with and without added geothite or ferrihidrite and the C respired over the timespan of the incubations.
54 ENVIRONMENTAL SCIENCES↗
An Ecosystem Simulation Model for Methane Production and Emission from Wetlands
Previous experimental studies suggest that methane emission from wetland is influenced by multiple interactive pathways of gas production and transport through soil and sediment layers to the atmosphere. The objective of this study is to evaluate a new simulation model of methane production and emission in wetland soils that was developed initially to help identify key processes that regulate methanogenesis and net flux of CH4 to the air, but which is designed ultimately for regional simulation using remotely sensed inputs for land cover characteristics. The foundation for these computer simulations is based on a well-documented model (CASA) of ecosystem production and carbon cycling in the terrestrial blaspheme. Modifications to represent flooded wetland soils and anaerobic decomposition include three new sub-models for: (1) layered soil temperature and water table depth (WTD) as a function of daily climate drivers, (2) CH4 production within the anoxic soil layer as a function of WTD and CO2 production under poorly drained conditions, and (3) CH4 gaseous transport pathways (molecular diffusion, ebullition, and plant vascular transport) as a function of WTD and ecosystem type. The model was applied and tested using climate and ecological data to characterize tundra wetland sites near Fairbanks, Alaska studied previously by Whalen and Reeburgh. Comparison of model predictions to measurements of soil temperature and thaw depth, water-table depth, and CH4 emissions over a two year period suggest that inter-site differences in soil physical conditions and methane fluxes could be reproduced accurately for selected periods. Day-to-day comparison of predicted emissions to measured CH4 flux rates reveals good agreement during the early part of the thaw season, but the model tends to underestimate production of CH4 during the months of July and August in both test years. Important seasonal effects, including that of falling WTD during these periods, are apparently overlooked in the model formulation. Nevertheless, reasonably close agreement was achieved between the model's mean daily and seasonal estimates of CH4 flux and observed emission rates for northern wetland ecosystems. Several features of the model are identified as crucial to more accurate prediction of wetland methane emission, including the capacity to incorporate influences of localized topographic and hydrologic features on site-specific soil temperature and WTD dynamics, and mechanistic simulation of methane emission transport pathways from within the soil profile.
Potter, C. S.↗
NCA-LDAS: Overview and Analysis of Hydrologic Trends for the National Climate Assessment
Terrestrial hydrologic trends over the conterminous United States are estimated for 1980-47 2015 using the National Climate Assessment-Land Data Assimilation System (NCA-LDAS) reanalysis. NCA-LDAS employs the uncoupled Noah Version 3.3 land surface model at 0.125 degreesx0.125 degrees forced with NLDAS-2 meteorology, rescaled Climate Prediction Center precipitation, and assimilated satellite-based soil moisture, snow depth and irrigation products. Mean annual trends are reported using the nonparametric Mann-Kendall test at p<0.1 significance. Results illustrate the interrelationship between regional gradients in forcing trends, and trends in other land energy and water stores and fluxes. Mean precipitation trends range from +3 to +9 mm/yr in the Upper Great Plains and Northeast to -1 to -9 in the West and South; net radiation flux trends range from +0.05 to +0.20 W/m(exp2)/yr in the East to -0.05 to -0.20 in the West; U.S.-wide temperature trends average about +0.03K/yr. Trends in soil moisture, snow cover, latent and sensible heat fluxes and runoff are consistent with forcings, contributing to increasing evaporative fraction trends from West to East. Evaluation of NCA-LDAS trends compared to independent data indicates mixed results. The RMSE of U.S.-wide trends in number of snow cover days improved from 3.13 to 2.89 days/yr while trend detection increased 11%; Trends in latent heat flux were hardly affected, RMSE decreasing only 0.17 to 0.16 W/m(exp 2)/yr, while trend detection increased 2%; NCA-LDAS runoff trends degraded significantly from 2.6 to 16.1 mm/yr while trend detection was unaffected. Analysis also indicated that NCA-LDAS exhibits relatively more skill in low precipitation station density areas, suggesting there are limits to the effectiveness of satellite data assimilation in densely gaged regions. Overall, NCA-LDAS demonstrates capability for quantifying physically consistent, U.S. hydrologic climate trends over the satellite era.
Snow depth↗
NCA-LDAS: Overview and Analysis of Hydrologic Trends for the National Climate Assessment
Terrestrial hydrologic trends over the conterminous United States are estimated for 1980–2015 using the National Climate Assessment Land Data Assimilation System (NCA-LDAS) reanalysis. NCA-LDAS employs the uncoupled Noah version 3.3 land surface model at 0.125° 3 0.125° forced with NLDAS-2 meteorology, rescaled Climate Prediction Center precipitation, and assimilated satellite-based soil moisture, snow depth, and irrigation products. Mean annual trends are reported using the nonparametric Mann–Kendall test at p < 0.1 significance. Results illustrate the interrelationship between regional gradients in forcing trends and trends in other land energy and water stores and fluxes. Mean precipitation trends range from +3 to +9 mm/yr in the upper Great Plains and Northeast to -1 to -9 mm/yr in the West and South, net radiation flux trends range from +0.05 to +0.20 W/sq. m yr in the East to -0.05 to -0.20 W/sq. m yr in the West, and U.S.-wide temperature trends average about +0.03K/yr. Trends in soil moisture, snow cover, latent and sensible heat fluxes, and runoff are consistent with forcings, contributing to increasing evaporative fraction trends from west to east. Evaluation of NCA-LDAS trends compared to independent data indicates mixed results. The RMSE of U.S.-wide trends in number of snow cover days improved from 3.13 to 2.89 days/yr while trend detection increased 11%. Trends in latent heat flux were hardly affected, with RMSE decreasing only from 0.17 to 0.16 W/sq. m yr, while trend detection increased 2%. NCA-LDAS runoff trends degraded significantly from 2.6 to 16.1 mm/yr while trend detection was unaffected. Analysis also indicated that NCA-LDAS exhibits relatively more skill in low precipitation station density areas, suggesting there are limits to the effectiveness of satellite data assimilation in densely gauged regions. Overall, NCA-LDAS demonstrates capability for quantifying physically consistent, U.S. hydrologic climate trends over the satellite era.
Michael F. Jasinski↗
Soil moisture ground truth, Hand County, South Dakota, October 20, 1976
Analyses of soil samples taken at three depths are presented in tables. Data include soil types, temperature, and moisture content.
Jones, E. B.↗
Effect of land-use practice on soil moisture variability for soils covered with dense forest vegetation of Puerto Rico
Little is known about the landuse management effect on soil moisture and soil pH distribution on a landscape covered with dense tropical forest vegetation. This study was conducted at three locations where the history of the landuse management is different. Soil moisture was measured using a 6-cm three-rod Time Domain Reflectometery (TDR) probe. Disturbed soil samples were taken from the top 5-cm at the up, mid, and foothill landscape position from the same spots where soil moisture was measured. The results showed that soil moisture varies with landscape position and depth at all three locations. Soil pH and moisture variability were found to be affected by the change in landuse management and landscape position. Soil moisture distribution usually expected to be relatively higher in the foothill (P3) area of these forests than the uphill (P1) position. However, our results indicated that in the Luquillo and Guanica site the surface soil moisture was significantly higher for P1 than P3 position. These suggest that the surface and subsurface drainage in these two sites may have been poor due to the nature of soil formation and type.
Tsegaye, T.↗
Developing a Redox Network for Coastal Saltmarsh Systems in the PFLOTRAN Reaction Model
Coastal ecosystems have been largely ignored in Earth system models but are important zones for carbon and nutrient processing. Interactions between water, microbes, soil, sediments, and vegetation are important for mechanistic representation of coastal processes and ecosystem function. To investigate the role of these feedbacks, we used a reactive transport model (PFLOTRAN) that has the capability to be connected to the Energy Exascale Earth System Model (E3SM). PFLOTRAN was used to incorporate redox reactions and track chemical species important for coastal ecosystems as well as define simple representations of vegetation dynamics. Here our goal was to incorporate oxygen flux, salinity, pH, sulfur cycling, and methane production along with plant-mediated transport of gases and tidal flux. Using porewater profile and incubation data for model calibration and evaluation, we were able to create depth-resolved biogeochemical soil profiles for saltmarsh habitat and use this updated representation to simulate direct and indirect effects of elevated CO 2 and temperature on subsurface biogeochemical cycling. We found that simply changing the partial pressure of CO 2 or increasing temperature in the model did not fully reproduce observed changes in the porewater profile, but the inclusion of plant or microbial responses to CO 2 and temperature manipulations was more accurate in representing porewater concentrations. This indicates the importance of characterizing tightly coupled vegetation-subsurface processes for developing predictive understanding and the need for measurement of plant-soil interactions on the same time scale to understand how hotspots or moments are generated.
54 ENVIRONMENTAL SCIENCES↗
Tree Diversity, Site Index, and Carbon Storage Decrease With Aridity in Douglas-Fir Forests in Western Canada
Forests are important for biodiversity, timber production and carbon accumulation, but these ecosystem services may be impacted by climate change. Field data collected from individual forest types occurring across a climatic gradient can contribute to forecasting these consequences. We examined how changes in temperature, precipitation and aridity affect ecosystem services in 23 mature Douglas-fir (Pseudotsuga menziesii) forests in nine climatic regions across a 900 km gradient in British Columbia, Canada. Using Canadian National Forest Inventory methodology, we assessed richness and diversity of plant functional groups, site index, and above- and below-ground carbon stocks. As aridity increased, ecosystem-level tree species richness declined on average from four to one species, Douglas-fir site index declined from 30 to 15 m, and ecosystem carbon storage decreased from 565 to 222 Mg ha –1 . Tree species richness was positively and herb species richness negatively correlated with carbon storage. Carbon storage by ecosystem compartment was largest in aboveground live tree biomass, declining in the following order: mineral soils > coarse woody debris and dead standing trees > forest floor > small and fine woody debris > understory plants. Mineral soil carbon at depths of 0-15 cm, 15-35 cm, and 35-55 cm increased with increasing mean annual precipitation and decreasing aridity. Our results indicate that as aridity increases and precipitation decreases, tree species richness, site index and carbon storage in existing Douglas-fir forests declines. However, assisted or natural migration of Douglas-fir into more humid regions could be associated with more diverse, productive, carbon-rich forests. This study informs carbon stock vulnerability and provides empirical data essential for carbon stock forecasts.
54 ENVIRONMENTAL SCIENCES↗
Groundwater Depth Overrides Tree-Species Effects on the Structure of Soil Microbial Communities Involved in Nitrogen Cycling in Plantation Forests
Microbial communities found in soil ecosystems play important roles in decomposing organic materials and recycling nutrients. A clear understanding on how biotic and abiotic factors influence the microbial community and its functional role in ecosystems is fundamental to terrestrial biogeochemistry and plant production. The purpose of this study was to investigate microbial communities and functional genes involved in nitrogen cycling as a function of groundwater depth (deep and shallow), tree species (pine and eucalypt), and season (spring and fall). Soil fungal, bacterial, and archaeal communities were determined by length heterogeneity polymerase chain reaction (LH-PCR). Soil ammonia oxidation archaeal (AOA) amoA gene, ammonia oxidation bacterial (AOB) amoA gene, nitrite oxidoreductase nrxA gene, and denitrifying bacterial narG, nirK, nirS, and nosZ genes were further studied using PCR and denaturing gradient gel electrophoresis (DGGE). Soil fungal and bacterial communities remained similar between tree species and groundwater depths, respectively, regardless of season. Soil archaeal communities remained similar between tree species but differed between groundwater depths in the spring only. Archaeal amoA for nitrification and bacterial nirK and nosZ genes for denitrification were detected in DGGE, whereas bacterial amoA and nrxA for nitrification and bacterial narG and nirS genes for denitrification were undetectable. The detected nitrification and denitrification communities varied significantly with groundwater depth. There was no significant difference of nitrifying archaeal amoA or denitrifying nirK communities between different tree species regardless of season. The seasonal difference in microbial communities and functional genes involved in nitrogen cycling suggests microorganisms exhibit seasonal dynamics that likely impact relative rates of nitrification and denitrification.
54 ENVIRONMENTAL SCIENCES↗
Deformational mass transport and invasive processes in soil evolution
Channels left in soil by decayed roots and burrowing animals allow organic and inorganic precipitates and detritus to move through soil from above, to depths at which the minuteness of pores restricts further passage. Consecutive translocation-and-root-growth phases stir the soil, constituting an invasive, dilatational process which generates cumulative strains. Below the depths thus affected, mineral dissolution by descending organic acids leads to internal collapse; this softened/condensed precursor horizon is then transformed into soil via biological activity that mixes and expands the evolving residuum through root and micropore-network invasion.
Brimhall, George H.↗