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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

MetaboDirect: an analytical pipeline for the processing of FT-ICR MS-based metabolomic data

Background: Microbiomes are now recognized as the main drivers of ecosystem function ranging from the oceans and soils to humans and bioreactors. However, a grand challenge in microbiome science is to characterize and quantify the chemical currencies of organic matter (i.e., metabolites) that microbes respond to and alter. Critical to this has been the development of Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS), which has drastically increased molecular characterization of complex organic matter samples, but challenges users with hundreds of millions of data points where readily available, user-friendly, and customizable software tools are lacking. Results: Here, we build on years of analytical experience with diverse sample types to develop MetaboDirect, an open-source, command-line-based pipeline for the analysis (e.g., chemodiversity analysis, multivariate statistics), visualization (e.g., Van Krevelen diagrams, elemental and molecular class composition plots), and presentation of direct injection high-resolution FT-ICR MS data sets after molecular formula assignment has been performed. When compared to other available FT-ICR MS software, MetaboDirect is superior in that it requires a single line of code to launch a fully automated framework for the generation and visualization of a wide range of plots, with minimal coding experience required. Among the tools evaluated, MetaboDirect is also uniquely able to automatically generate biochemical transformation networks (ab initio) based on mass differences (mass difference network-based approach) that provide an experimental assessment of metabolite connections within a given sample or a complex metabolic system, thereby providing important information about the nature of the samples and the set of microbial reactions or pathways that gave rise to them. Finally, for more experienced users, MetaboDirect allows users to customize plots, outputs, and analyses. Conclusion: Application of MetaboDirect to FT-ICR MS-based metabolomic data sets from a marine phage-bacterial infection experiment and a Sphagnum leachate microbiome incubation experiment showcase the exploration capabilities of the pipeline that will enable the research community to evaluate and interpret their data in greater depth and in less time. It will further advance our knowledge of how microbial communities influence and are influenced by the chemical makeup of the surrounding system. The source code and User’s guide of MetaboDirect are freely available through (https://github.com/Coayala/MetaboDirect) and (https://metabodirect.readthedocs.io/en/latest/), respectively.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Investigating Marine Environmental Degradation of Additive Manufacturing Materials for Renewable Energy Applications: Preprint

Marine renewable energy is a relatively young industry where there is a great need for rapid prototyping in design-build-test campaigns to quickly mature groundbreaking technologies. Additive manufacturing has an important role to play in the industry; however, little information is available to marine energy developers to help inform them on which additive manufacturing materials are appropriate for harsh marine environments. This paper presents an initial study on the mechanical characterization of polymeric additive manufacturing materials and the degradation effects of marine environments. Ultem 9085, acrylonitrile styrene acrylate, and chopped carbon-filled nylon, as well as continuous carbon and glass fiber-reinforced nylon were chosen for this study. Samples were manufactured to perform a variety of tension, shear, and compression mechanical characterization tests on the materials. Half of the samples were conditioned in Pacific Ocean water for approximately 6 months at Pacific Northwest National Laboratory's Marine Sciences Laboratory before being returned for mechanical characterization. The mechanical testing results showed that the Ultem 9085 and acrylonitrile styrene acrylate materials experienced little to no degradation in stiffness or strength after exposure to the marine environment. On the other hand, the nylon-based materials suffered significant stiffness and strength degradation (over 50% in some cases) after environmental conditioning. Ultimately, these data sets should serve as starting points to allow marine renewable energy developers to make informed additive manufacturing material choices for their prototype deployments.

additive manufacturing↗
DOE OSTI2021

Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems

Marine microbial ecology requires the systematic comparison of biogeochemical and sequence data to analyze environmental influences on the distribution and variability of microbial communities. With ever-increasing quantities of metagenomic data, there is a growing need to make datasets Findable, Accessible, Interoperable, and Reusable (FAIR) across diverse ecosystems. FAIR data is essential to developing analytical frameworks that integrate microbiological, genomic, ecological, oceanographic, and computational methods. Although community standards defining the minimal metadata required to accompany sequence data exist, they haven’t been consistently used across projects, precluding interoperability. Moreover, these data are not machine-actionable or discoverable by cyberinfrastructure systems. By making ‘omic and physicochemical datasets FAIR to machine systems, we can enable sequence data discovery and reuse based on machine-readable descriptions of environments or physicochemical gradients. In this work, we developed a novel technical specification for dataset encapsulation for the FAIR reuse of marine metagenomic and physicochemical datasets within cyberinfrastructure systems. This includes using Frictionless Data Packages enriched with terminology from environmental and life-science ontologies to annotate measured variables, their units, and the measurement devices used. This approach was implemented in Planet Microbe, a cyberinfrastructure platform and marine metagenomic web-portal. Here, we discuss the data properties built into the specification to make global ocean datasets FAIR within the Planet Microbe portal. We additionally discuss the selection of, and contributions to marine-science ontologies used within the specification. Finally, we use the system to discover data by which to answer various biological questions about environments, physicochemical gradients, and microbial communities in meta-analyses. This work represents a future direction in marine metagenomic research by proposing a specification for FAIR dataset encapsulation that, if adopted within cyberinfrastructure systems, would automate the discovery, exchange, and re-use of data needed to answer broader reaching questions than originally intended.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Elevated levels of radiocarbon in methane dissolved in seawater reveal likely local contamination from nuclear powered vessels

Measurements of the natural radiocarbon content of methane ( 14 C-CH 4 ) dissolved in seawater and freshwater have been used to investigate sources and dynamics of methane. However, during investigations along the Atlantic, Pacific, and Arctic Ocean Margins of the United States, as well as in the North American Great Lakes, some samples revealed highly elevated 14 C-CH 4 values, as much as 4–5 times above contemporary atmospheric 14 C-CH 4 levels. Natural production of the 14 CH 4 isotopologue is too low to cause these observations nor can it explain the variations in location and depth. Numerous lab and field validation tests and blanks, as well as the relatively small number of samples that display these elevated values, all suggest that these signals are not derived from an unknown procedural issue. Here, in this work, we suggest that the byproducts of nuclear power generation include localized discharges of the 14 CH4 isotopologue into marine and aquatic environments, severely altering the measured 14 C-CH 4 isotopic signals. Since several of our sample sites are distant from on-land nuclear powerplants, we conduct further calculations concluding that the most elevated anomalies in 14 C-CH 4 likely originate with discharge from nuclear-powered vessels.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Characterizing the Roles of Biogeochemical Cycling and Ocean Circulation in Regulating Marine Copper Distributions

Copper (Cu) is a key micronutrient for marine phytoplankton. Its oceanic biogeochemical cycle has elicited considerable attention due to dissolved Cu exhibiting a unique linear profile with depth. Several processes have been proposed for explaining this behavior. Here, in this study, we characterize the relationships between the observed Cu, PO 4 3– , and Si on a global scale. We find that the depth profiles of Cu resemble those of Si more than of PO 4 3– in the global ocean. To understand their relationships, we couple the biogeochemical and internal circulation processes in a model, fitting optimal Cu:PO 4 3– uptake ratios and remineralization length-scales to replicate the marine Cu distributions. The modeling results suggest that Cu uptake needs in the Southern Ocean are substantially higher than those in other oceanic regions. In addition, our modeling results indicate a deep Cu remineralization in the global ocean. We offer an alternative mechanism that relies on biogeochemical cycling and internal circulation to produce the linear depth profiles of dissolved Cu. Our results suggest that diatoms are likely the major phytoplankton dominating oceanic Cu cycling.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

Forced Component Estimation Statistical Method Intercomparison Project (ForceSMIP)

Anthropogenic climate change is unfolding rapidly, yet its regional manifestation can be obscured by internal variability. A primary goal of climate science is to identify the externally forced climate response from among the noise of internal variability. Separating the forced response from internal variability can be addressed in climate models by using a large ensemble to average over different possible realizations of internal variability. However, with only one realization of the real world, it is a major challenge to isolate the forced response directly in observations. In the Forced Component Estimation Statistical Method Intercomparison Project (ForceSMIP), contributors used existing and newly developed statistical and machine learning methods to estimate the forced response over 1950–2022 within individual realizations of the climate system. Participants used neural networks, linear inverse models, fingerprinting methods, and low-frequency component analysis, among other approaches. These methods were trained using large ensembles from multiple climate models and then applied to observations. Here, we evaluate method performance within large ensembles and investigate the estimates of the forced response in observations. Our results show that many different types of methods are skillful for estimating the forced response in climate models, though the relative skill of individual methods varies depending on the variable and evaluation metric. Methods with comparable skill in models can give a wide range of estimates of the forced response pattern in observations, illustrating the epistemic uncertainty in forced response estimates. ForceSMIP gives new insights into the forced response in observations, its uncertainty, and methods for its estimation.

Climate attribution↗
DOE OSTI2024

2024 OES-Environmental 2024 State of the Science Report, Chapter 8: Marine Renewable Energy Data and Information Systems

As the marine renewable energy (MRE) sector grows, large amounts of environmental and technical data and information are being collected. When these data and information are openly available, they can be used to guide research and development, inform responsible siting and consenting of projects, and increase stakeholder understanding through transparency. For example, quality environmental data collected during the siting, consenting, construction, operation, and decommissioning of MRE projects can all play key roles in better characterizing baseline conditions, developing effective monitoring and mitigation strategies, and retiring environmental risks through data transferability (see Chapter 6). Ensuring that these data and information are easily discoverable and accessible will help the MRE sector make informed decisions and coexist in an increasingly busy ocean environment.

16 TIDAL AND WAVE POWER↗
DOE OSTI2023

Assessing kelp nutrient bioextraction capacity in aquaculture farms in the US with implications for conservation and management

This proposal aimed to assess the carbon and nitrogen bioextraction capabilities of sugar kelp farms across a broad geographic range encompassing both the East and West Coasts of the United States. To meet this objective, the project team first developed a cost-effective sampling toolkit using readily available materials and an illustrated protocol to guide kelp farmers in standardized sample collection. Farmers were trained to use the toolkit and prepare samples for shipment to the University of Alaska Fairbanks, where laboratory analyses were conducted to quantify carbon and nitrogen removal. Results were then shared with collaborating farmers, farm managers, regulatory agencies, and the general public to disseminate findings and gauge interest in the bioextraction services offered by kelp aquaculture. The project also investigated temporal and species-specific differences in carbon and nitrogen removal as a complementary objective.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Evaluating bloom potential of the green-tide forming alga Ulva ohnoi under ocean acidification and warming

Herein we discuss the occurrence of green-tides, whose bloom potential may be increased by various human activities and biogeochemical process, results in enormous economic losses and ecosystem collapse. In this study, we investigated the ecophysiology of the subtropical green-tide forming alga, Ulva ohnoi complex (hereafter: U. ohnoi), under simulated future ocean conditions in order to predict its bloom potential using photosynthesis and growth measurements, and stable isotope analyses. Our mesocosm system included four experimental conditions that simulated the individual and combined effects of elevated CO 2 and temperature, namely control (450 μatm CO 2 & 20 °C), acidification (900 μatm CO 2 & 20 °C), warming (450 μatm CO 2 & 25 °C), and greenhouse (900 μatm CO 2 & 25 °C). Photosynthetic electron transport rates (rETR) increased significantly under acidification conditions, but net photosynthesis and growth were not affected. In contrast, rETR, net photosynthesis, and growth all decreased significantly under elevated temperature conditions (i.e. both warming and greenhouse). These results represent the imbalance of energy metabolism between electron transport and O 2 production that may be expected under ocean acidification conditions. This imbalance appears to be related to carbon and nitrogen assimilation by U. ohnoi. In particular, 13 C and 15 N discrimination data suggest U. ohnoi prefers CO 2 and NH 4 + over HCO 3 - and NO 3 - as sources of carbon and nitrogen, respectively, and this results in increased N content in the thallus under ocean acidification conditions. Together, our results suggest a trade-off in which the bloom potential of U. ohnoi could increase under ocean acidification due to greater N accumulation and through the saving of energy during carbon and nitrogen metabolism, but that elevated temperatures could decrease U. ohnoi's bloom potential through a decrease in photosynthesis and growth.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

The SMART Cables Initiative for Ocean and Geophysical Observing [Slides]

SMART Cables are becoming a reality, and have the potential to revolutionize submarine oceanographic and geophysical sensing. Pilot / demonstration projects are underway to test the technology and explore the feasibility of incorporating both in-repeater standardized sensor packets but also ancillary sensor types on external, branching nodes. The projects currently in planning will set the standard and influence the norms for the future of SMART systems. The interest of all potential stakeholders and users, and input as to needs and concerns, is welcomed as testing proceeds.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Advancing ocean monitoring and knowledge for societal benefit: the urgency to expand Argo to OneArgo by 2030

The ocean plays an essential role in regulating Earth’s climate, influencing weather conditions, providing sustenance for large populations, moderating anthropogenic climate change, encompassing massive biodiversity, and sustaining the global economy. Human activities are changing the oceans, stressing ocean health, threatening the critical services the ocean provides to society, with significant consequences for human well-being and safety, and economic prosperity. Effective and sustainable monitoring of the physical, biogeochemical state and ecosystem structure of the ocean, to enable climate adaptation, carbon management and sustainable marine resource management is urgently needed. The Argo program, a cornerstone of the Global Ocean Observing System (GOOS), has revolutionized ocean observation by providing real-time, freely accessible global temperature and salinity data of the upper 2,000m of the ocean (Core Argo) using cost-effective simple robotics. For the past 25 years, Argo data have underpinned many ocean, climate and weather forecasting services, playing a fundamental role in safeguarding goods and lives. Argo data have enabled clearer assessments of ocean warming, sea level change and underlying driving processes, as well as scientific breakthroughs while supporting public awareness and education. Building on Argo’s success, OneArgo aims to greatly expand Argo’s capabilities by 2030, expanding to full-ocean depth, collecting biogeochemical parameters, and observing the rapidly changing polar regions. Providing a synergistic subsurface and global extension to several key space-based Earth Observation missions and GOOS components, OneArgo will enable biogeochemical and ecosystem forecasting and new long-term climate predictions for which the deep ocean is a key component. Driving forward a revolution in our understanding of marine ecosystems and the poorly-measured polar and deep oceans, OneArgo will be instrumental to assess sea level change, ocean carbon fluxes, acidification and deoxygenation. Emerging OneArgo applications include new views of ocean mixing, ocean bathymetry and sediment transport, and ecosystem resilience assessment. Implementing OneArgo requires about $100 million annually, a significant increase compared to present Argo funding. OneArgo is a strategic and cost-effective investment which will provide decision-makers, in both government and industry, with the critical knowledge needed to navigate the present and future environmental challenges, and safeguard both the ocean and human wellbeing for generations to come.

ARGO↗
DOE OSTI2025

Enhanced Simulation of Atmospheric Blocking in a High‐Resolution Earth System Model: Projected Changes and Implications for Extreme Weather Events

Atmospheric blocking is closely linked to the occurrence of extreme weather events. However, low-resolution Earth system models often underestimate the frequency of blocking, undermining confidence in future projections. Here, in this study, we use the high-resolution Community Earth System Model (CESM-HR; 25 km atm and 10 km ocean) to show that CESM-HR reduces biases in atmospheric blocking for both winter and summer, particularly for events lasting longer than 10 days. This improvement is partly due to reduced sea surface temperature biases at higher resolution. Additionally, applying a bias correction to the 500 hPa geopotential height further enhances blocking frequency simulations, highlighting the crucial role of the mean state. Under the Representative Concentration Pathway 8.5 scenario, CESM-HR projects a decrease in wintertime blocking over regions such as the Euro-Atlantic and Chukchi-Alaska, consistent with previous studies. In contrast, summer blocking is expected to become more frequent and persistent, driven by weakened zonal winds. The blocking center shifts from historical locations over Scandinavia and eastern Russia to central Eurasia, significantly increasing blocking over the Ural region. Summer blocking frequency over the Scandinavia-Ural region may eventually surpass historical winter blocking over the Euro-Atlantic. This increase in summer blocking could exacerbate summer heatwaves in a warming climate, making severe heatwaves, like those observed recently, more common in the future.

Atmospheric blocking↗
DOE OSTI2020

Scaling Global Warming Impacts on Ocean Ecosystems: Lessons From a Suite of Earth System Models

An important technique used by climate modelers to isolate the impacts of increasing greenhouse gasses on Earth System processes is to simulate the impact of an abrupt increase in carbon dioxide. The spatial pattern of change provides a “fingerprint” that is generally much larger than natural variability. Insofar as the response to radiative forcing is linear (the impact of quadrupling CO 2 is twice the impact of doubling CO 2 ) this fingerprint can then be used to estimate the impact of historical greenhouse gas forcing. However, the degree to which biogeochemical cycles respond linearly to radiative forcing has rarely been tested. In this paper, we evaluate which ocean biogeochemical fields are likely to respond linearly to changing radiative forcing, which ones do not, and where linearity breaks down. We also demonstrate that the representation of lateral mixing by mesoscale eddies, which varies significantly across climate models, plays an important role in modulating the breakdown of linearity. Globally integrated surface rates of biogeochemical cycling (primary productivity, particulate export) respond in a relatively linear fashion and are only moderately sensitive to mixing. By contrast, the habitability of the interior ocean (as determined by hypoxia and calcite supersaturation) behaves non-linearly and is very sensitive to mixing. This is because the deep ocean, as well as certain regions in the surface ocean, are very sensitive to the magnitude of deep wintertime convection. The cessation of convection under global warming is strongly modulated by the representation of eddy mixing.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

Emergent constraints on future methane emissions from global wetlands

Future methane (CH 4 ) emissions from natural wetlands are predicted to increase due to global warming, leading to positive feedback on climate change. However, the magnitude of this increase remains highly uncertain. Here we present novel ensemble simulations of seven state-of-the-art terrestrial biosphere models to estimate wetland CH 4 emissions (eCH 4 ) during the twenty-first century. Our estimates suggest that for every 1 °C increase in global land surface temperature, there is a 24 ± 10 Tg CH 4 yr −1 increase in eCH 4 . We also identify an emergent relationship between contemporary temperature dependence and projected eCH 4 . When constrained by 163 site-year eddy-covariance measurements of eCH 4 , we show that wetland emissions can increase by 50–60% by the 2090s relative to the 2010s under a high-warming scenario. The projected decadal increase in eCH 4 from the 2010–2019 baseline to the 2030s would very likely (90% probability) offset an amount equivalent in scale to 8–10% of anthropogenic eCH 4 at the 2020 level, comparable to the reductions committed under the Global Methane Pledge. However, the constraint is dominated by mid- and high-latitude observations, with limited tropical coverage, and uncertainties in projected wetland inundation contribute substantially to uncertainty in eCH 4 . Our findings reduce the uncertainty in projected wetland methane–climate feedback and highlight its potential impacts on methane mitigation efforts to slow global warming.

Zhang, Zhen [Chinese Academy of Sciences (CAS), Be↗