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At least 307 records · Page 17

Comprehensive characterization of extracellular vesicles produced by environmental (Neff) and clinical (T4) strains of Acanthamoeba castellanii

We conducted a comprehensive comparative analysis of extracellular vesicles (EVs) from two Acanthamoeba castellanii strains, Neff (environmental) and T4 (clinical). Morphological analysis via transmission electron microscopy revealed slightly larger Neff EVs (average = 194.5 nm) compared to more polydisperse T4 EVs (average = 168.4 nm). Nanoparticle tracking analysis (NTA) and dynamic light scattering validated these differences. Proteomic analysis of the EVs identified 1,352 proteins, with 1,107 common, 161 exclusive in Neff, and 84 exclusively in T4 EVs. Gene ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) mapping revealed distinct molecular functions and biological processes and notably, the T4 EVs enrichment in serine proteases, aligned with its pathogenicity. Lipidomic analysis revealed a prevalence of unsaturated lipid species in Neff EVs, particularly triacylglycerols, phosphatidylethanolamines (PEs), and phosphatidylserine, while T4 EVs were enriched in diacylglycerols and diacylglyceryl trimethylhomoserine, phosphatidylcholine and less unsaturated PEs, suggesting differences in lipid metabolism and membrane permeability. Metabolomic analysis indicated Neff EVs enrichment in glycerolipid metabolism, glycolysis, and nucleotide synthesis, while T4 EVs, methionine metabolism. Furthermore, RNA-seq of EVs revealed differential transcript between the strains, with Neff EVs enriched in transcripts related to gluconeogenesis and translation, suggesting gene regulation and metabolic shift, while in the T4 EVs transcripts were associated with signal transduction and protein kinase activity, indicating rapid responses to environmental changes. In this novel study, data integration highlighted the differences in enzyme profiles, metabolic processes, and potential origins of EVs in the two strains shedding light on the diversity and complexity of A. castellanii EVs and having implications for understanding host-pathogen interactions and developing targeted interventions for Acanthamoeba-related diseases.

59 BASIC BIOLOGICAL SCIENCES↗

FFA BEAM TRANSPORT DEMONSTRATION DEVELOPMENT FOR THE CEBAF 22 GeV UPGRADE

Jefferson Lab is planning an upgrade of the Continuous Electron Beam Accelerator Facility (CEBAF) to deliver highly polarized electron beams up to 22 GeV using Fixed- Field Alternating-gradient (FFA) magnets. As the application of FFA technology in the 10–22 GeV energy range is unprecedented, experimental validation is required prior to full-scale implementation. To support this effort, a dedicated FFA test insert is proposed within the existing CEBAF infrastructure, with candidate locations in the Beam Switchyard (BSY) dump line or the Hall C beamline. The testbed will consist of a half or full FFA cell using combined-function permanent magnets and will enable systematic studies of beam transport, field quality, alignment, and magnet performance under realistic conditions. Operation with polarized beams in the 5–11 GeV range will closely replicate the energy scaling of the full upgrade. This paper presents the current design status and layout options for the proposed FFA beam transport test line.

Ogur, S. [Thomas Jefferson National Accelerator Fa↗

Limiting Behavior of Asteroid Obliquity and Spin Using a Semi-analytic Thermal Model of the YORP Effect

The Yarkovsky–O’Keefe–Radzievskii–Paddack (YORP) effect governs the spin evolution of small asteroids. The axial component of YORP, which alters the rotation rate of the asteroid, is mostly independent of its thermal inertia, while the obliquity component is very sensitive to the thermal model of the asteroid. Here, we develop a semi-analytic theory for the obliquity component of YORP. We integrate an approximate thermal model over the surface of an asteroid, and find an analytic expression for the obliquity component in terms of two YORP coefficients. This approach allows us to investigate the overall evolution of asteroid rotation state, and to generalize the results previously obtained in the case of zero thermal inertia. The proposed theory also explains how a nonzero obliquity component of YORP originates even for a symmetric asteroid, due to its finite thermal inertia. In many cases, this causes equatorial planes of asteroids to align with their orbital planes. The studied nontrivial behavior of YORP as a function of thermal model allows for a new kind of rotational equilibria, which can have important evolutionary consequences for asteroids.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Magnetic and metallurgical properties of directionally solidified eutectic Bi/MnBi composites - The effects of annealing

Eutectic Bi/MnBi (97.8 a/o Bi) samples have been plane-front directionally solidified. The resultant microstructures consist of elongated, aligned particles of MnBi dispersed in a Bi-matrix. Magnetization as a function of temperature (4.2 to 300 K) and applied field (up to 220 kG) has been used to evaluate solidification parameters and magnetic properties. At room temperature, in addition to the diamagnetic contribution of Bi, one finds a superposition of the ferromagnetic, low temperature (LTP) MnBi phase and paramagnetic phases. At cryogenic temperatures, one of the room temperature paramagnetic phases is ferromagnetic with an intrinsic coercivity of 120 kOe while the other remains paramagnetic for low fields and orders ferromagnetically at high fields in a complicated way. Annealing of as-grown samples was found to produce significant changes in magnetic properties. The origins of the paramagnetic phases and their relation to the mechanisms which control the coercive field of the hard magnetic LTP MnBi phase are discussed.

Pirich, R. G.↗

Shuttle orbiter stellar-inertial reference system

The Space Shuttle stellar-inertial reference system is a velocity and attitude data source during flight operations. An overview of the reference system is presented as well as specifics discussing design concepts, functional operation, and performance capabilities. Techniques for star sighting and inertial measurement unit alignment and calibration are described, and alignment accuracy, star tracker capability, and gyro and accelerometer accuracy are discussed, with emphasis on flight test results. Test programs have confirmed that the system meets performance requirements such as being accurate to within 0.26 degree at the 400,000 foot altitude entry interface in order to execute an accurate touchdown, as well as demonstrating reusability, payload capability, and operational flexibility. Growth possibilities, such as the implementation of rendezvous target tracking, are discussed.

Smith, F. E.↗

Near-infrared mapping spectrometer optical subsystem development and testing

The Near-Infrared Mapping Spectrometer (NIMS) is one of the four remote-sensing science instruments of the Galileo Orbiter scientific payload. The NIMS scientific objectives require operating the detector and optical subsystem at cryogenic temperatures. The necessity of assembling, aligning, and testing the optics at room temperature and meeting design specifications at the cryogenic operating temperature (130 K) presented a set of challenging technical problems. A systematic approach to the development of athermalized mounts and supporting structures for optical components is described. A technique utilizing the visible spectral range and supplementary ray-trace information for alignment of an infrared instrument is presented. The optical subsystem point-spread function and spatial and spectral resolution were determined at room temperature using selected spectral and spatial targets. Based on thermal-distortion analyses of the structure and mounts, compensators were selected, implemented, and verified at cryogenic temperatures. The selection of the compensator and the overall system performance were verified in a thermal vacuum chamber. Various external and internal calibration targets were used.

Macenka, S. A.↗

Acceleration of runaway electrons in solar flares

The dc electric field acceleration of electrons out of a thermal plasma and the evolution of the runaway tail are studied numerically, using a relativistic quasi-linear code based on the Ritz-Galerkin method and finite elements. A small field-aligned electric field is turned on at a certain time. The resulting distribution function from the runaway process is used to calculate the synchrotron emission during the evolution of the runaway tail. It is found that, during the runaway tail formation, which lasts a few tens of seconds for typical solar flare conditions, the synchrotron emission level is low, almost ot the same order as the emission from the thermal plasma, at the high-frequency end of the spectrum. However, the emission is enhanced explosively in a few microseconds by several orders of magnitude at the time the runaway tail stops growing along the magnetic field and tends toward isotropy due to the pitch-angle scattering of the fast particles. Results indicate that, in order to account for the observed synchrotron emission spectrum of a typical solar flare, the electric field acceleration phase must be accompanied or preceded by a heating phase which yields an enhanced electron temperature of about 2-15 keV in the flare region if the electric field is 0.1-0.2 times the Dreicer field and cyclotron-to-plasma frequency ratios are of order 1-2.

Moghaddam-Taaheri, E.↗

Circadian rhythms of women with fibromyalgia

Fibromyalgia syndrome is a chronic and debilitating disorder characterized by widespread nonarticular musculoskeletal pain whose etiology is unknown. Many of the symptoms of this syndrome, including difficulty sleeping, fatigue, malaise, myalgias, gastrointestinal complaints, and decreased cognitive function, are similar to those observed in individuals whose circadian pacemaker is abnormally aligned with their sleep-wake schedule or with local environmental time. Abnormalities in melatonin and cortisol, two hormones whose secretion is strongly influenced by the circadian pacemaker, have been reported in women with fibromyalgia. We studied the circadian rhythms of 10 women with fibromyalgia and 12 control healthy women. The protocol controlled factors known to affect markers of the circadian system, including light levels, posture, sleep-wake state, meals, and activity. The timing of the events in the protocol were calculated relative to the habitual sleep-wake schedule of each individual subject. Under these conditions, we found no significant difference between the women with fibromyalgia and control women in the circadian amplitude or phase of rhythms of melatonin, cortisol, and core body temperature. The average circadian phases expressed in hours posthabitual bedtime for women with and without fibromyalgia were 3:43 +/- 0:19 and 3:46 +/- 0:13, respectively, for melatonin; 10:13 +/- 0:23 and 10:32 +/- 0:20, respectively for cortisol; and 5:19 +/- 0:19 and 4:57 +/- 0:33, respectively, for core body temperature phases. Both groups of women had similar circadian rhythms in self-reported alertness. Although pain and stiffness were significantly increased in women with fibromyalgia compared with healthy women, there were no circadian rhythms in either parameter. We suggest that abnormalities in circadian rhythmicity are not a primary cause of fibromyalgia or its symptoms.

Non-NASA Center↗

Spatial Reorientation of Sensorimotor Balance Control in Altered Gravity

Sensorimotor coordination of body segments following space flight are more pronounced after landing when the head is actively tilted with respect to the trunk. This suggests that central vestibular processing shifts from a gravitational frame of reference to a head frame of reference in microgravity. A major effect of such changes is a significant postural instability documented by standard head-erect Sensory Organization Tests. Decrements in functional performance may still be underestimated when head and gravity reference frames remained aligned. The purpose of this study was to examine adaptive changes in spatial processing for balance control following space flight by incorporating static and dynamic tilts that dissociate head and gravity reference frames. A second aim of this study was to examine the feasibility of altering the re-adaptation process following space flight by providing discordant visual-vestibular-somatosensory stimuli using short-radius pitch centrifugation.

Paloski, W. H.↗

The OTOLITH Experiment - Assessment of Otolith Function During Postflight Re-adaption

The ongoing "Otolith" experiment is designed to comprehensively assess the otolith function during the re-adaptation phase after spaceflight. The novel protocol includes unilateral testing of each of the two otolith organs the utricle and the saccule. To assess utricle function, the otolith-ocular response (OOR) and the subjective visual vertical (SVV) are measured during unilateral centrifugation, which permits independent stimulation of the right and left ear. Measurement of the unilateral otolith-ocular response (uOOR) yields information on the response behaviour of the right and left peripheral utricles, whereas the SVV reflects the behaviour of the entire pathway from the peripheral otolith receptors to the vestibular cortex. Thus, by comparative evaluation of the results from the two tests, the degree of peripheral versus central adaptation during the post-flight period can be determined. To assess unilateral saccule function, vestibular evoked myogenic potentials (VEMP) are recorded. Since the saccules are predominantly aligned to gravity, and interplay with the antigravity muscles, it is hypothesised that these potentials shall be altered after spaceflight. To date the study has been conducted with 5 of a planned 8 short-flight Shuttle astronauts. Preliminary results will be discussed together with those from clinical studies of dizziness patients, where the same test protocol is employed. ACKNOWLEDGEMENT This work is supported by the German Aerospace Center (Grant DLR W130729) and is conducted under the auspices of ESA, in cooperation with NASA.

Clarke, A. H.↗

Multiparameter laser performance characterization of liquid crystals for polarization control devices in the nanosecond regime

Abstract Interactions of liquid crystals (LC’s) with polarized light have been studied widely and have spawned numerous device applications, including the fabrication of optical elements for high-power and large-aperture laser systems. Currently, little is known about both the effect of incident polarization state on laser-induced–damage threshold (LIDT) and laser-induced functional threshold (LIFT) behavior at sub-LIDT fluences under multipulse irradiation conditions. This work reports on the first study of the nanosecond-pulsed LIDT’s dependence on incident polarization for several optical devices employing oriented nematic and chiral-nematic LC’s oriented by surface alignment layers. Accelerated lifetime testing was also performed to characterize the ability of these devices to maintain their functional performance under multipulse irradiation as a function of the laser fluence at both 1053 nm and 351 nm. Results show that the LIDT varies as a function of input polarization by 30–80% within the same device, while the multipulse LIFT (which can differ from the nominal LIDT) depends on irradiation conditions such as laser fluence and wavelength.

47 OTHER INSTRUMENTATION↗

A phase-field model for void and gas bubble superlattice formation in irradiated solids

A phase-field model to simulate the formation of both void and gas bubble superlattices is derived from a grand potential functional, assuming 1D diffusion of self-interstitial atoms. The model is capable of accounting for superlattice formation by either a nucleation and growth or spinodal decomposition mechanism; in this work, we focus on the nucleation and growth mechanism, using a discrete nucleation approach in the phase-field model. In simulations of void formation, short aligned rows of voids were initially formed, followed by growth in the size of the aligned rows, and finally leading to superlattice formation, consistent with experimental observations. Void superlattice spacing as a function of model parameters was quantified. Increased nucleation rates led to smaller superlattice spacing, while increased vacancy diffusivity led to larger superlattice spacing. In simulations of gas bubble superlattice formation, superlattice spacing decreased with increasing gas atom flux, consistent with experimental observations. Here, simulations with increasing ratio of gas atom flux to vacancy-interstitial pair production led to increased superlattice spacing, which is inconsistent with experimental observations at high gas atom flux rates; this discrepancy is attributed to the fact that the model does not account for bound gas atom-vacancy pairs that may dominate at high gas flux rates.

36 MATERIALS SCIENCE↗

Scattering and the Point Spread Function of the New Generation Space Telescope

Preliminary design work on the New Generation Space Telescope (NGST) is currently under way. This telescope is envisioned as a lightweight, deployable Cassegrain reflector with an aperture of 8 meters, and an effective focal length of 80 meters. It is to be folded into a small-diameter package for launch by an Atlas booster, and unfolded in orbit. The primary is to consist of an octagon with a hole at the center, and with eight segments arranged in a flower petal configuration about the octagon. The comers of the petal-shaped segments are to be trimmed so that the package will fit atop the Atlas booster. This mirror, along with its secondary will focus the light from a point source into an image which is spread from a point by diffraction effects, figure errors, and scattering of light from the surface. The distribution of light in the image of a point source is called a point spread function (PSF). The obstruction of the incident light by the secondary mirror and its support structure, the trimmed corners of the petals, and the grooves between the segments all cause the diffraction pattern characterizing an ideal point spread function to be changed, with the trimmed comers causing the rings of the Airy pattern to become broken up, and the linear grooves causing diffraction spikes running radially away from the central spot, or Airy disk. Any figure errors the mirror segments may have, or any errors in aligning the petals with the central octagon will also spread the light out from the ideal point spread function. A point spread function for a mirror the size of the NGST and having an incident wavelength of 900 nm is considered. Most of the light is confined in a circle with a diameter of 0.05 arc seconds. The ring pattern ranges in intensity from 10(exp -2) near the center to 10(exp -6) near the edge of the plotted field, and can be clearly discerned in a log plot of the intensity. The total fraction of the light scattered from this point spread function is called the total integrated scattering (TIS), and the fraction remaining is called the Strehl ratio. The angular distribution of the scattered light is called the angle resolved scattering (ARS), and it shows a strong spike centered on a scattering angle of zero, and a broad , less intense distribution at larger angles. It is this scattered light, and its effect on the point spread function which is the focus of this study.

Schreur, Julian J.↗

Identifying microbial functional guilds performing cryptic organotrophic and lithotrophic redox cycles in anaerobic granular biofilms

Granular biofilms used in anaerobic digester systems contain diverse microbial populations that interact to hydrolyze organic matter and produce methane within controlled environments. Prior research investigated the feasibility of utilizing granular biofilms obtained from an anaerobic digester to remove nitrate without the addition of exogenous electron donors. These granules possessed a unique structure of alternating light and dark iron sulfide and pyrite rich layers that potentially served as both an electron source and sink, linking carbon, nitrogen, sulfur, and iron cycles. To characterize the functional roles of diverse microbial populations enriched within these layered biofilms, we analyzed metagenomes obtained from three different granules. Comparisons between the functional gene content of forty metagenome assembled genomes (MAGs) identified phylogenetically cohesive functional guilds. Each of these functional MAG clusters was assigned to specific steps in anaerobic digestion (hydrolysis, acidogenesis, acetogenesis, and methanogenesis) and anaerobic respiration (denitrification and sulfate reduction). Comparisons with metagenomes derived from a variety of natural and engineered ecosystems confirmed that the enriched denitrifying bacteria were similar to populations typically found in wetlands and biological nitrogen removal systems. Analysis of read alignments to individual genes within the forty MAGs identified conserved genomic features that were representative of the functions that distinguished functional guilds. Overall, this research illustrates the utility of functional based classification of microorganisms for characterizing ecosystem functions and highlights the potential application of engineered ecosystems to serve as experimental models for complex natural ecosystems.

Ecosystem engineering↗

Differential expression of members of the annexin multigene family in Arabidopsis

Although in most plant species no more than two annexin genes have been reported to date, seven annexin homologs have been identified in Arabidopsis, Annexin Arabidopsis 1-7 (AnnAt1--AnnAt7). This establishes that annexins can be a diverse, multigene protein family in a single plant species. Here we compare and analyze these seven annexin gene sequences and present the in situ RNA localization patterns of two of these genes, AnnAt1 and AnnAt2, during different stages of Arabidopsis development. Sequence analysis of AnnAt1--AnnAt7 reveals that they contain the characteristic four structural repeats including the more highly conserved 17-amino acid endonexin fold region found in vertebrate annexins. Alignment comparisons show that there are differences within the repeat regions that may have functional importance. To assess the relative level of expression in various tissues, reverse transcription-PCR was carried out using gene-specific primers for each of the Arabidopsis annexin genes. In addition, northern blot analysis using gene-specific probes indicates differences in AnnAt1 and AnnAt2 expression levels in different tissues. AnnAt1 is expressed in all tissues examined and is most abundant in stems, whereas AnnAt2 is expressed mainly in root tissue and to a lesser extent in stems and flowers. In situ RNA localization demonstrates that these two annexin genes display developmentally regulated tissue-specific and cell-specific expression patterns. These patterns are both distinct and overlapping. The developmental expression patterns for both annexins provide further support for the hypothesis that annexins are involved in the Golgi-mediated secretion of polysaccharides.

Non-NASA Center↗

Adjoint methods for aerodynamic wing design

A model inverse design problem is used to investigate the effect of flow discontinuities on the optimization process. The optimization involves finding the cross-sectional area distribution of a duct that produces velocities that closely match a targeted velocity distribution. Quasi-one-dimensional flow theory is used, and the target is chosen to have a shock wave in its distribution. The objective function which quantifies the difference between the targeted and calculated velocity distributions may become non-smooth due to the interaction between the shock and the discretization of the flowfield. This paper offers two techniques to resolve the resulting problems for the optimization algorithms. The first, shock-fitting, involves careful integration of the objective function through the shock wave. The second, coordinate straining with shock penalty, uses a coordinate transformation to align the calculated shock with the target and then adds a penalty proportional to the square of the distance between the shocks. The techniques are tested using several popular sensitivity and optimization methods, including finite-differences, and direct and adjoint discrete sensitivity methods. Two optimization strategies, Gauss-Newton and sequential quadratic programming (SQP), are used to drive the objective function to a minimum.

Grossman, Bernard↗

Direct Laser Impulse (DLI) System Alignment: Requirements Engineering Project

The National Ignition Facility (NIF) is the world’s largest and most energetic laser, and it is comprised of 192 laser beams that must align onto one target for the purpose of learning about Internal Confinement Fusion (ICF) and High Energy Density (HED) physics. A new NIF capability under development is the Direct Laser Impulse (DLI). The DLI capability will provide a test environment where high pulsed laser energy is delivered to a three-dimensional target. Achieving this delivery to target relies on a precision alignment and positioning of the two redirected NIF beams, as shown in Figure 1. When aligned, the two combined beams—with a frequency converted from infrared (IR) to green laser light, at a fluence (energy per unit area) of roughly 20 joules per square centimeter—will be capable of delivering up to 30 kilojoules of direct, unfocused energy to a one cubic foot target. The 40-cm x 40-cm aligned impulse area at the DLI target interaction plane (TIP) is achieved by using a beam path comprised of pickoff and transport mirrors, frequency conversion crystals, optics serving as environmental barriers, and debris shields. A separate aligned diagnostic beam path is also required for impulse to TIP characterization. Final in-situ alignment is required for the two populated diverted NIF beam paths onto the DLI target as well as the diagnostic optical beam path. Existing NIF alignment subsystems do not offer references that meet DLI’s unique demand. The new DLI Red Box, which has been designed to allow for alignment, has been shown to require deviation from the intended configuration and operational use case to obtain adequate functionality. A systems engineering evaluation has identified a solution that meets the stakeholder requirements while optimizing key performance parameters. The solution, referred to in this document as the Red Box “+” Rotated, was determined to be an improved version of the current DLI Red Box. This system offers improved system repeatability and alignment stability while maintaining similar interfaces and decreasing the demand for engineer/operator interaction.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Matrix converter operation in current control mode with regulation of output voltage vector

A matrix converter system having a current control mode operation is provided. The matrix converter system includes a matrix converter that includes a plurality of switches. A unity current reference vector having an amplitude of one is determined that defines an angle and frequency of an output current vector as a function of a reference phase angle, which is a function of the output current vector and an output voltage vector representing feedback signals of a multiphase signal output to a load. The unity current reference vector is used to control the matrix converter, to cause the output current vector to be aligned with the unity current reference vector. A unity voltage reference vector having an amplitude of one is provided that defines a reference angle and frequency as a function of a zero phase angle. The output voltage vector and the unity voltage reference vector are aligned to determine the reference phase angle as an angle between the aligned output voltage vector and the output current vector.

42 ENGINEERING↗