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At least 307 records · Page 17

Control and synchronization of rapid nanoscale DNA heat engine by local heating

To further activate devices based on DNA nanotechnology, we introduce an approach that notably enhances both the speed and force of DNA powered machines and artificial hinge machine. A microheater, with millisecond response, heats or recools DNA origami constructs, hybridizing or dehybridizing sticky ends. Because anything within 20 micrometers of the heater equilibrates to a programmed temperature change in milliseconds, sticky ends of a compound DNA origami machine can open and close synchronously and operate cooperatively, in phase, additively increasing the drive force compared to single pair of sticky ends DNA machine (the six-helix bundle DNA origami hinge machine). In our demonstrations, we fold and unfold two square origami with 10 pairs of complementary sticky ends to drive a bead on the end of a rod like origami to speeds exceeding 30 micrometers per second. Our device envisions the creation of complex, synchronized DNA machines.

Science & Technology - Other Topics↗

A stoichiometrically conserved homologous series with infinite structural diversity

Here, we describe a compositionally guided structural evolution within a stoichiometrically conserved framework, BaSbQ 3 (Q = Te 1−x S x ), where each value of x gives rise to a distinct phase. The fundamental building blocks, A 1 (BaSbSTe 2 ) and B n (Ba n Sb n S n−1 Te 2n+1 ), were composed of modular double rocksalt slabs stacked with functional polytelluride zigzag chains, with each phase differing only in the size and assembly of these blocks. Ten compounds were synthesized that maintained a coherent chemical identity that arose from this isovalent, isoelectronic substitution of Te and S. We envision that the phase formation at a molecular level unfolds in stages of extension, termination, and assembly and propose a design concept of “anionic disparity,” where phase homologies and polytelluride hierarchical networks can be controlled by leveraging differences in anion electron affinity and sizes.

Zhao, Hengdi [Argonne National Laboratory (ANL), A↗

Measurements of the inclusive and differential production cross sections of a top-quark–antiquark pair in association with a Z boson at $\sqrt{s}$ = 13 TeV with the ATLAS detector

Measurements of both the inclusive and differential production cross sections of a top-quark–antiquark pair in association with a Z boson ($t\bar{t}Z$) are presented. The measurements are performed by targeting final states with three or four isolated leptons (electrons or muons) and are based on $\sqrt{s}$=13 TeV proton–proton collision data with an integrated luminosity of 139 fb -1 , recorded from 2015 to 2018 with the ATLAS detector at the CERN Large Hadron Collider. The inclusive cross section is measured to be σ $t\bar{t}Z$ =0.99 ± 0.05 (stat.) ± 0.08 (syst.) pb, in agreement with the most precise theoretical predictions. The differential measurements are presented as a function of a number of kinematic variables which probe the kinematics of the $t\bar{t}Z$ system. Both absolute and normalised differential cross-section measurements are performed at particle and parton levels for specific fiducial volumes and are compared with theoretical predictions at different levels of precision, based on a χ 2 /ndf and p value computation. Overall, good agreement is observed between the unfolded data and the predictions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Measurement of the differential $\hbox {t}\overline{\hbox {t}}$ production cross section as a function of the jet mass and extraction of the top quark mass in hadronic decays of boosted top quarks

A measurement of the jet mass distribution in hadronic decays of Lorentz-boosted top quarks is presented. The measurement is performed in the lepton + jets channel of top quark pair production ($\hbox {t}\overline{\hbox {t}}$) events, where the lepton is an electron or muon. The products of the hadronic top quark decay are reconstructed using a single large-radius jet with transverse momentum greater than 400 GeV. The data were collected with the CMS detector at the LHC in proton-proton collisions and correspond to an integrated luminosity of 138 fb -1 . The differential $\hbox {t}\overline{\hbox {t}}$ production cross section as a function of the jet mass is unfolded to the particle level and is used to extract the top quark mass. The jet mass scale is calibrated using the hadronic W boson decay within the large-radius jet. The uncertainties in the modelling of the final state radiation are reduced by studying angular correlations in the jet substructure. These developments lead to a significant increase in precision, and a top quark mass of 173.06 ± 0.84 GeV.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A precise measurement of the Z -boson double-differential transverse momentum and rapidity distributions in the full phase space of the decay leptons with the ATLAS experiment at $\sqrt{s}=8$ TeV

This paper presents for the first time a precise measurement of the production properties of the Z boson in the full phase space of the decay leptons. This is in contrast to the many previous precise unfolded measurements per formed in the fiducial phase space of the decay leptons. The measurement is obtained from proton–proton collision data collected by the ATLAS experiment in 2012 at $\sqrt{s}$ = 8 TeV at the LHC and corresponding to an integrated luminosity of 20.2 fb -1 . The results, based on a total of 15.3 million Z boson decays to electron and muon pairs, extend and improve a previous measurement of the full set of angular coefficients describing Z-boson decay. The double-differential cross section distributions in Z-boson transverse momentum pT and rapidity y are measured in the pole region, defined as 80 < m ℓℓ < 100 GeV, over the range |y| < 3.6. The total uncertainty of the normalised cross-section measurements in the peak region of the pT distribution is dominated by statistical uncertainties over the full range and increases as a function of rapidity from 0.5–1.0% for |y| < 2.0 to 2 - 7% at higher rapidities. The results for the rapidity-dependent transverse momentum distributions are compared to state of-the-art QCD predictions, which combine in the best cases approximate N 4 LL resummation with N 3 LO fixed-order per turbative calculations. The differential rapidity distributions integrated over pT are even more precise, with accuracies from 0.2–0.3% for |y| < 2.0 to 0.4–0.9% at higher rapidities, and are compared to fixed-order QCD predictions using the most recent parton distribution functions. The agreement between data and predictions is quite good in most cases.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Precise measurements of W - and Z -boson transverse momentum spectra with the ATLAS detector using pp collisions at $\sqrt{s} = 5.02$ TeV and 13 TeV

This paper describes measurements of the transverse momentum spectra of W and Z bosons produced in proton–proton collisions at centre-of-mass energies of $\sqrt{s}$ = 5.02 TeV and $\sqrt{s}$ = 13 TeV with the ATLAS experiment at the Large Hadron Collider. Measurements are performed in the electron and muon channels, W → $\ell$$v$ and Z → $\ell$$\ell$ ($\ell$ = e or μ), and for W events further separated by charge. The data were collected in 2017 and 2018, in dedicated runs with reduced instantaneous luminosity, and correspond to 255 and 338 pb -1 at $\sqrt{s}$ = 5.02 TeV and 13 TeV, respectively. These conditions optimise the reconstruction of the W-boson transverse momentum. The distributions observed in the electron and muon channels are unfolded, combined, and compared to QCD calculations based on parton shower Monte Carlo event generators and analytical resummation. The description of the transverse momentum distributions by Monte Carlo event generators is imperfect and shows significant differences largely common to W - , W + and Z production. The agreement is better at $\sqrt{s}$ = 5.02 TeV, especially for predictions that were tuned to Z production data at $\sqrt{s}$ = 7 TeV. Higher-order, resummed predictions based on DYTurbo generally match the data best across the spectra. Distribution ratios are also presented and test the understanding of differences between the production processes.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Measurement of multidifferential cross sections for dijet production in proton–proton collisions at $\sqrt{s}$ = 13 TeV

A measurement of the dijet production cross section is reported based on proton–proton collision data collected in 2016 at $\sqrt{s}$ = 13 TeV by the CMS experiment at the CERN LHC, corresponding to an integrated luminosity of up to 36.3 fb –1 . Jets are reconstructed with the anti-$k$ T algorithm for distance parameters of R = 0.4 and 0.8. Cross sections are measured double-differentially (2D) as a function of the largest absolute rapidity |y| max of the two jets with the highest transverse momenta $p$ T and their invariant mass $m$ 1,2 , and triple-differentially (3D) as a function of the rapidity separation $y$*, the total boost $y$ b , and either $m$ 1,2 or the average $p$ T of the two jets. The cross sections are unfolded to correct for detector effects and are compared with fixed-order calculations derived at next-to-next-to-leading order in perturbative quantum chromodynamics. The impact of the measurements on the parton distribution functions and the strong coupling constant at the mass of the Z boson is investigated, yielding a value of $α$ S ($m$ Z ) = 0.1179 ± 0.0019.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Forced Component Estimation Statistical Method Intercomparison Project (ForceSMIP)

Anthropogenic climate change is unfolding rapidly, yet its regional manifestation can be obscured by internal variability. A primary goal of climate science is to identify the externally forced climate response from among the noise of internal variability. Separating the forced response from internal variability can be addressed in climate models by using a large ensemble to average over different possible realizations of internal variability. However, with only one realization of the real world, it is a major challenge to isolate the forced response directly in observations. In the Forced Component Estimation Statistical Method Intercomparison Project (ForceSMIP), contributors used existing and newly developed statistical and machine learning methods to estimate the forced response over 1950–2022 within individual realizations of the climate system. Participants used neural networks, linear inverse models, fingerprinting methods, and low-frequency component analysis, among other approaches. These methods were trained using large ensembles from multiple climate models and then applied to observations. Here, we evaluate method performance within large ensembles and investigate the estimates of the forced response in observations. Our results show that many different types of methods are skillful for estimating the forced response in climate models, though the relative skill of individual methods varies depending on the variable and evaluation metric. Methods with comparable skill in models can give a wide range of estimates of the forced response pattern in observations, illustrating the epistemic uncertainty in forced response estimates. ForceSMIP gives new insights into the forced response in observations, its uncertainty, and methods for its estimation.

Climate attribution↗

UNRAVEL: A Robust Modular Velocity Dealiasing Technique for Doppler Radar

Unfold Radar Velocity (UNRAVEL) is an open-source modular Doppler velocity dealiasing algorithm for weather radars. UNRAVEL is an algorithm that does not need external reference velocity data, making it easily applicable. The proposed algorithm includes 11 core modules and 2 dealiasing strategies. UNRAVEL is an iterative algorithm. The goal is to build the dealiasing results starting with the strictest possible continuity tests in azimuth and range and, after each step, relaxing the parameters to include more results from a progressively growing number of reference points. UNRAVEL also has modules that perform 3D continuity checks. Thanks to this modular design, the number of dealiasing strategies can be expanded in order to optimize the dealiasing results. While the first driver dealiases Doppler velocity from each tilt independently from one another, the second driver also performs a three-dimensional continuity check of the velocity using successive elevations. The proposed dealiasing algorithm is tested using severe weather data from an S-band Doppler radar that have been aliased to mimic aliased radial velocity patterns that would be observed by a C-band Doppler radar. Artificially aliasing S-band data permits creation of a reference to which the performance of various dealiasing techniques can be compared. Comparisons show that UNRAVEL consistently outperforms other established dealiasing algorithms for the test period selected in this work.

47 OTHER INSTRUMENTATION↗

COVID-19-Related Experiences and Perspectives of Peruvian College Students: A Descriptive Study

The COVID-19 pandemic drastically affected higher education and higher education students around the world, but few studies of college students’ experiences during the COVID-19 pandemic have been conducted in Latin America. This study describes the COVID-19-related experiences and perspectives of Peruvian college students. We surveyed 3,427 full-time college students (average age: 23 years) attending a multi-campus Peruvian university in fall 2020. Participants were recruited through the digital platform of the learning management system at their university, email, and social media. We asked participants how they were managing risks related to COVID-19; the continuity of social, educational, and work activities; and the psychological and economic impacts of the pandemic on their lives. Since March 2020, 73.0% of participants reported COVID-19-related symptoms, but only 33.9% were tested for COVID-19. During the national quarantine imposed by the Peruvian government (March 15–June 30, 2020), 64.3% of participants remained in their house. Furthermore, while 44.0% of participants were working in February 2020 (95% CI: [41.7%, 46.4%]), only 23.6% (95% CI: [21.7%, 25.7%]) were working immediately after the pandemic began (i.e., at the end of April 2020). Participants were more stressed about the health and educational implications of COVID-19 for Peruvian society and their families than about themselves. The public health, economic, and educational implications of COVID-19 on college students are continuing to unfold. This study informed Peruvian higher education institutions’ continued response to the COVID-19 pandemic, the progressive return to postpandemic activities, as well as other future pandemics and other crises.

Bazo-Alvarez, Juan Carlos↗

CAZymes from the thermophilic fungus Thermoascus aurantiacus are induced by C5 and C6 sugars

Abstract Background Filamentous fungi are excellent lignocellulose degraders, which they achieve through producing carbohydrate active enzymes (CAZymes). CAZyme production is highly orchestrated and gene expression analysis has greatly expanded understanding of this important biotechnological process. The thermophilic fungus Thermoascus aurantiacus secretes highly active thermostable enzymes that enable saccharifications at higher temperatures; however, the genome-wide measurements of gene expression in response to CAZyme induction are not understood. Results A fed-batch system with plant biomass-derived sugars d -xylose, l -arabinose and cellobiose established that these sugars induce CAZyme expression in T. aurantiacus . The C5 sugars induced both cellulases and hemicellulases, while cellobiose specifically induced cellulases. A minimal medium formulation was developed to enable gene expression studies of T. aurantiacus with these inducers. It was found that d-xylose and l -arabinose strongly induced a wide variety of CAZymes, auxiliary activity (AA) enzymes and carbohydrate esterases (CEs), while cellobiose facilitated lower expression of mostly cellulase genes. Furthermore, putative orthologues of different unfolded protein response genes were up-regulated during the C5 sugar feeding together with genes in the C5 sugar assimilation pathways. Conclusion This work has identified two additional CAZyme inducers for T. aurantiacus , l -arabinose and cellobiose, along with d -xylose. A combination of biochemical assays and RNA-seq measurements established that C5 sugars induce a suite of cellulases and hemicellulases, providing paths to produce broad spectrum thermotolerant enzymatic mixtures.

09 BIOMASS FUELS↗

Magnesium ions mitigate metastable states in the regulatory landscape of mRNA elements

Residing in the 5' untranslated region of the mRNA, the 2'-deoxyguanosine (2'-dG) riboswitch mRNA element adopts an alternative structure upon binding of the 2'-dG molecule, which terminates transcription. RNA conformations are generally strongly affected by positively charged metal ions (especially Mg 2+ ). We have quantitatively explored the combined effect of ligand (2'-dG) and Mg 2+ binding on the energy landscape of the aptamer domain of the 2'-dG riboswitch with both explicit solvent all-atom molecular dynamics simulations (99 μsec aggregate sampling for the study) and selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE) experiments. We show that both ligand and Mg 2+ are required for the stabilization of the aptamer domain; however, the two factors act with different modalities. The addition of Mg 2+ remodels the energy landscape and reduces its frustration by the formation of additional contacts. In contrast, the binding of 2'-dG eliminates the metastable states by nucleating a compact core for the aptamer domain. Mg 2+ ions and ligand binding are required to stabilize the least stable helix, P1 (which needs to unfold to activate the transcription platform), and the riboswitch core formed by the backbone of the P2 and P3 helices. Mg 2+ and ligand also facilitate a more compact structure in the three-way junction region.

59 BASIC BIOLOGICAL SCIENCES↗

Strengthening of enterococcal biofilms by Esp

Multidrug-resistant (MDR) Enterococcus faecalis are major causes of hospital-acquired infections. Numerous clinical strains of E . faecalis harbor a large pathogenicity island that encodes enterococcal surface protein (Esp), which is suggested to promote biofilm production and virulence, but this remains controversial. To resolve this issue, we characterized the Esp N-terminal region, the portion implicated in biofilm production. Small angle X-ray scattering indicated that the N-terminal region had a globular head, which consisted of two DEv-Ig domains as visualized by X-ray crystallography, followed by an extended tail. The N-terminal region was not required for biofilm production but instead significantly strengthened biofilms against mechanical or degradative disruption, greatly increasing retention of Enterococcus within biofilms. Biofilm strengthening required low pH, which resulted in Esp unfolding, aggregating, and forming amyloid-like structures. The pH threshold for biofilm strengthening depended on protein stability. A truncated fragment of the first DEv-Ig domain, plausibly generated by a host protease, was the least stable and sufficient to strengthen biofilms at pH ≤ 5.0, while the entire N-terminal region and intact Esp on the enterococcal surface was more stable and required a pH ≤ 4.3. These results suggested a virulence role of Esp in strengthening enterococcal biofilms in acidic abiotic or host environments.

59 BASIC BIOLOGICAL SCIENCES↗

NOvA Inclusive Nue CC Cross Section Data Release

NOvA inclusive electron neutrino cross section results presented at Neutrino2020Exposure:8.09E20 protons-on-target, neutrino-enhanced beamData release contains 3 ROOT files containing the double-differential measurement with respect to electron angle (cos theta) and electron energy, a single-differential measurement with respect to squared four-momentum transfer (Q2), and the total cross section as a function of neutrino energy. The 1D cross-section measurements include the same kinematic phase space restrictions present in the double-differential analysis.The files, xsec_{dThdE/Enu/dQ2}.root, contain the extracted cross section and associated covariance matrices for the double-differential cross section with respect to the observed electron kinematics, dThdE, neutrino energy, Enu, and squared four-momentum transfer, Q^2.In each file there will be the following histograms:— TH2D/TH1D xsec: unfolded measured cross section— TH2D xsec_cov: cross section covariance matrix— TH2D stat_cov: statistical covariance matrixIncludes text files, xsec_{dThdE/Enu/dQ2}.txt show the corresponding histograms in plain text format.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Modeled estimates of permafrost hydrology and related fields for pan-Arctic region over the period 1980-2100

This dataset contains gridded estimates of total runoff (mm/day); subsurface runoff (mm/day); snow water equivalent (SWE, mm/day); vertical upward water flux of combined surface evaporation, evapotranspiration, and snow sublimation (mm/day); and soil temperature (C) across the pan-Arctic basin from simulations of the Permafrost Water Balance Model (PWBM v4). These data were generated to allow researchers to advance understanding of the changes unfolding in the Arctic's terrestrial water cycle under the influences of climate warming, hydrological cycle intensification, and permafrost thaw. The dataset will enable researchers to address important questions spanning multiple disciplines. For example, how will rising river flows exported to the coast impact critical zone ecosystems, near-shore ice dynamics, and ocean biogeochemical processes. Spatial resolution is 25x25 km with N=39926 grid cells spanning the domain. Three forcing datasets were used to drive simulations at an implicit daily time step over the period 1980-2100. Daily air temperature, precipitation, and wind speed data from the WATCH Forcing Data methodology applied to ERA5 reanalysis (W5E5) were used for meteorological forcings over the period 1980-2019. Simulations for the period 1980-2100 used meteorological data from two global climate models; IPSL-CM6A-LR and MPI-ESM1-2-HR. The PWBM hydrological outputs are organized by grid and month in gzipped ASCII text files within each archived tar file. Soil temperature is organized by grid cell and day of year from DOY 205 to DOY 260. No special software is required to work with these data. The package contains spatial domain and river basin information files. These data are most useful for analyses of the spatial and temporal variations in terrestrial hydrology and soil thermal dynamics. A manuscript describing the model simulations and associated analysis has been accepted for publication in The Cryosphere (Rawlins and Karmalkar, 2024).

54 ENVIRONMENTAL SCIENCES↗

A microscopic realization of dS$_3$

We propose a precise duality between pure de Sitter quantum gravity in 2+1 2 + 1 dimensions and a double-scaled matrix integral. This duality unfolds in two distinct aspects. First, by carefully quantizing the gravitational phase space, we arrive at a novel proposal for the quantum state of the universe at future infinity. We compute cosmological correlators of massive particles in the universe specified by this wavefunction. Integrating these correlators over the metric at future infinity yields gauge-invariant observables, which are identified with the string amplitudes of the complex Liouville string [S. Collier et al., arXiv: 2409.17246]. This establishes a direct connection between integrated cosmological correlators and the resolvents of the matrix integral dual to the complex Liouville string, thereby demonstrating one aspect of the dS _3 3 /matrix integral duality. The second aspect concerns the cosmological horizon of the dS static patch and the Gibbons-Hawking entropy it is conjectured to encode. We show that this entropy can be reproduced exactly by counting the entries of the matrix.

Collier, Scott (ORCID:0000000286476653)↗

Climate Change Science Review 2018 and Associated Social and Economic Impacts

Climate change and its impacts on average temperature, water supply, agriculture, coastal flooding, biodiversity, social and economic stability, human migration, and overall global stability is one of the leading threats emerging for humanity, and is likely to increase as a threat for decades to come. This report represents a snapshot of climate change data, information, and understanding, as of 2018, and can serve as a kind of benchmark for changes going forward in time. This report covers temperature change and heat effects, atmospheric and ocean circulation, freshwater supply changes, sea level rise and flooding, extreme climate events, oceanic deoxygenation, land degredation, social and economic changes, migration, and food. Data and information on all these issues represent a compelling body of knowledge supporting the scientific hypothesis describing climate change, and an important mile marker in our effort to track the unfolding nature of the problem. A slide presentation that summarizes the content of this report is in Appendix A and can serve as an executive summary for the report.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Thirty Minutes Before the Dawn

The Trinity test of July 16, 1945, marked the scientific apex of the Manhattan Project. Often recognized as the symbolic birth of the nuclear age, Trinity’s multifaceted legacy remains just as captivating and complex today as it did 75 years ago. This paper examines why the test was necessary from a technical standpoint, shows how Los Alamos scientists planned the event, and explores the physical and emotional aftermaths of Trinity. The author also uses rarely accessed original records to reconstruct the story of Trinity’s health hazards, as seen through the eyes of radiation technicians and medical doctors as events unfolded. Trinity was conducted as the Potsdam Conference began, weeks after the collapse of Nazi Germany. It was considered necessary to let President Harry S. Truman know whether the United States possessed a nuclear capability ahead of his negotiations with Joseph Stalin, the Soviet premier. The author examines the competing priorities that drove the timetable for the test: international politics, security, and safety. Three weeks after Trinity, a gun-assembled enriched-uranium bomb called Little Boy was used against the Japanese city of Hiroshima. Three days later, Fat Man, a weaponized version of the imploding Trinity device, was dropped on Nagasaki. The author briefly examines these strikes and what impact they may have had on the Japanese surrender. The paper concludes by examining the legacy of the Trinity test 75 years into the age it helped usher in.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗