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At least 307 records · Page 17

Nonphotochemical quenching kinetics GWAS in sorghum identifies genes that may play conserved roles in maize and Arabidopsis thaliana photoprotection

SUMMARY Photosynthetic organisms must cope with rapid fluctuations in light intensity. Nonphotochemical quenching (NPQ) enables the dissipation of excess light energy as heat under high light conditions, whereas its relaxation under low light maximizes photosynthetic productivity. We quantified variation in NPQ kinetics across a large sorghum ( Sorghum bicolor ) association panel in four environments, uncovering significant genetic control for NPQ. A genome‐wide association study (GWAS) confidently identified three unique regions in the sorghum genome associated with NPQ and suggestive associations in an additional 61 regions. We detected strong signals from the sorghum ortholog of Arabidopsis thaliana Suppressor Of Variegation 3 ( SVR3 ) involved in plastid–nucleus signaling. By integrating GWAS results for NPQ across maize ( Zea mays ) and sorghum‐association panels, we identified a second gene, Non‐yellowing 1 ( NYE1 ), originally studied by Gregor Mendel in pea ( Pisum sativum ) and involved in the degradation of photosynthetic pigments in light‐harvesting complexes. Analysis of nye1 insertion alleles in A. thaliana confirmed the effect of this gene on NPQ kinetics in eudicots. We extended our comparative genomics GWAS framework across the entire maize and sorghum genomes, identifying four additional loci involved in NPQ kinetics. These results provide a baseline for increasing the accuracy and speed of candidate gene identification for GWAS in species with high linkage disequilibrium.

Plant Sciences↗

Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish

ABSTRACT Coastal herbivorous fishes consume macroalgae, which is then degraded by microbes along their digestive tract. However, there is scarce genomic information about the microbiota that perform this degradation. This study explores the potential of Kyphosus gastrointestinal microbial symbionts to collaboratively degrade and ferment polysaccharides from red, green, and brown macroalgae through in silico study of carbohydrate-active enzyme and sulfatase sequences. Recovery of metagenome-assembled genomes (MAGs) from previously described Kyphosus gut metagenomes and newly sequenced bioreactor enrichments reveals differences in enzymatic capabilities between the major microbial taxa in Kyphosus guts. The most versatile of the recovered MAGs were from the Bacteroidota phylum, whose MAGs house enzyme collections able to decompose a variety of algal polysaccharides. Unique enzymes and predicted degradative capacities of genomes from the Bacillota (genus Vallitalea ) and Verrucomicrobiota (order Kiritimatiellales ) highlight the importance of metabolic contributions from multiple phyla to broaden polysaccharide degradation capabilities. Few genomes contain the required enzymes to fully degrade any complex sulfated algal polysaccharide alone. The distribution of suitable enzymes between MAGs originating from different taxa, along with the widespread detection of signal peptides in candidate enzymes, is consistent with cooperative extracellular degradation of these carbohydrates. This study leverages genomic evidence to reveal an untapped diversity at the enzyme and strain level among Kyphosus symbionts and their contributions to macroalgae decomposition. Bioreactor enrichments provide a genomic foundation for degradative and fermentative processes central to translating the knowledge gained from this system to the aquaculture and bioenergy sectors. IMPORTANCE Seaweed has long been considered a promising source of sustainable biomass for bioenergy and aquaculture feed, but scalable industrial methods for decomposing terrestrial compounds can struggle to break down seaweed polysaccharides efficiently due to their unique sulfated structures. Fish of the genus Kyphosus feed on seaweed by leveraging gastrointestinal bacteria to degrade algal polysaccharides into simple sugars. This study reconstructs metagenome-assembled genomes for these gastrointestinal bacteria to enhance our understanding of herbivorous fish digestion and fermentation of algal sugars. Investigations at the gene level identify Kyphosus guts as an untapped source of seaweed-degrading enzymes ripe for further characterization. These discoveries set the stage for future work incorporating marine enzymes and microbial communities in the industrial degradation of algal polysaccharides.

59 BASIC BIOLOGICAL SCIENCES↗

Enhancing the hunt for new phenomena in dijet final states using anomaly detection filters at the high-luminosity large Hadron Collider

In the realm of dijet searches in high-energy physics, a significant challenge has emerged: with experiments producing more and more data, the traditional methods of using analytic functions to describe dijet mass spectra start to fail. Here, to address this, we suggest the application of an anomaly detection approach to eliminate less interesting background events based on event final states. This method not only bypasses the limitations of conventional background models but also significantly enhances our ability to detect potential signals of new physics. Through simulations that mimic the conditions of the upcoming high-luminosity large Hadron collider, we demonstrate the strength and efficiency of this approach in dealing with large data volumes. The integration of unsupervised machine learning into our experimental framework paves the way for a promising avenue to unveil hidden physics discoveries within the overwhelming influx of data.

47 OTHER INSTRUMENTATION↗

Testing, Operation, and Analysis of a Photosensitive LArTPC

LArTPCs detect charge and light from particle interactions to study neutrinos indirectly. TinyTPC, a compact LArTPC with a pixelated readout system (LArPix), aims to improve energy measurements for low-energy events by enhancing ionization charge collection. It will explore the effects of photosensitive dopants and xenon in liquid argon. Isobutylene, with ionization energy near argon's scintillation energy, efficiently converts scintillation light into a detectable ionization signal.

McCright, Hannah↗

Utilizing the Quantum Zeno Effect in superconducting qubit based particle sensors

Superconducting qubit sensors are a compelling option for detecting faint signals from dark matter or low energy neutrino interactions. Improving their reach calls for both signal amplification and background suppression. The Quantum Zeno Effect (QZE)--which governs how entanglement reshapes a quantum system's time evolution--addresses both needs. By quantifying these modified time dynamics, we can better predict a qubit's response to a genuine particle event while suppressing coherence dips from other local disturbances. We present a new QZE-based protocol that could mitigate a dominant source of coherence fluctuations from Two Level Systems, show initial measurements of the QZE in superconducting qubits, and discuss additional opportunities where understanding and exploiting the effect are critical for building robust, high-sensitivity qubit detectors.

Seidel, Olivia [Fermilab]↗

How Do You Hear a Quantum Computer Whisper?

Quantum transduction is the process of upconverting microwave quantum signals into optical signals to develop quantum networks through optical fibers outside the dilution refrigerator, enabling connections between quantum technologies on the quantum internet. In this project, upconversion is achieved by directing an optical laser and the microwave quantum signal into an electro-optic bulk crystal. The crystal is housed within a Superconducting Radio Frequency (SRF) cavity designed to maximize the overlap between the microwave field and the crystal volume. In the presence of microwaves, the refractive index of the crystal changes through the Pockels effect. This change in refractive index modifies the propagation of the optical field within the crystal, allowing the quantum information carried by the microwave field to be transferred to the optical field. This study focuses on coupling laser light from suspended waveguide chips into the whispering-gallery modes (WGMs) of the crystal to enable transduction. The coupling efficiency between the optical field in the suspended waveguide and the WGM depends on the position of the laser spot on the crystal. To address this challenge, a feedback-based algorithm is being developed to fine-tune the waveguide position so that the optical signal is coupled efficiently into the crystal. After passing through the crystal, the optical signal is detected by a photodiode connected to an oscilloscope. The algorithm evaluates the coupling quality and iteratively adjusts the waveguide position to maximize coupling efficiency. The expected outcome is an automated waveguide alignment method that improves optical coupling and enables more efficient microwave-to-optical quantum transduction.

Karanastasis, Mihael [Fermilab]↗

Block Island Noise Monitoring Data

Underwater sound levels near Block Island were monitored during wind turbine construction and operational phases to detect acoustic signals and sediment-borne vibrations, providing real-time data to improve model predictions for future offshore wind facilities.

17 WIND ENERGY↗

Detection of the Large Surface Explosion Coupling Experiment by a Sparse Network of Balloon-Borne Infrasound Sensors

In recent years, high-altitude infrasound sensing has become more prolific, demonstrating an enormous value especially when utilized over regions inaccessible to traditional ground-based sensing. Similar to ground-based infrasound detectors, airborne sensors take advantage of the fact that impulsive atmospheric events such as explosions can generate low frequency acoustic waves, also known as infrasound. Due to negligible attenuation, infrasonic waves can travel over long distances, and provide important clues about their source. Here, we report infrasound detections of the Apollo detonation that was carried on 29 October 2020 as part of the Large Surface Explosion Coupling Experiment in Nevada, USA. Infrasound sensors attached to solar hot air balloons floating in the stratosphere detected the signals generated by the explosion at distances 170–210 km. Three distinct arrival phases seen in the signals are indicative of multipathing caused by the small-scale perturbations in the atmosphere. We also found that the local acoustic environment at these altitudes is more complex than previously thought.

47 OTHER INSTRUMENTATION↗

Quantum random number generators

Random number generators include a thermal optical source and detector configured to produce random numbers based on quantum-optical intensity fluctuations. An optical flux is detected, and signals proportional to optical intensity and a delayed optical intensity are combined. The combined signals can be electrical signals or optical signals, and the optical source is selected so as to have low coherence over a predetermined range of delay times. Balanced optical detectors can be used to reduce common mode noise, and in some examples, the optical flux is directed to only one of a pair of balanced detectors.

97 MATHEMATICS AND COMPUTING↗

System and method for monitoring atomic absorption during a surface modification process

A processing system monitors and/or controls a surface modification process occurring on a substrate within a processing chamber. An optical processing module having a light emission submodule to output a generated light signal and an optical detection submodule to detect a resultant light signal, is connected via fiber optic cables to light illuminating and light receiving components located within the chamber. A processor determines an amount of atomic absorption by an atomic element encountered by a probing beam passing between the illuminating and receiving components, based on the intensity of the generated light signal, the intensity of the received light signal and optionally the spontaneous emission of the atomic element in the absence of illumination by a probing beam. Based on the determined amount, the system derives a plurality of parameters of the modified substrate, their spatial and temporal uniformity, and information about process conditions in the processing chamber.

Atanasoff, George↗

Seismoacoustic Monitoring of Pyroprocessing Equipment

With the projected increase in world nuclear capacity comes the hurdle of spent nuclear fuel. Pyroprocessing is one method to process irradiated fuel by using high temperatures and electrochemical steps to separate radioactive components. High temperatures, high radiation levels, and equipment confined to a heavily shielded hot cell are a few of the challenges introduced regarding safeguards for pyroprocessing. The first stage of the process utilizes an element chopper to cut irradiated fuel into smaller pieces, offering the potential to identify equipment operation through seismoacoustic monitoring. Eleven seismic and infrasound sensors were deployed at various locations and distances near a pyroprocessing hot cell to evaluate signals emitted from the chopper. Signals were processed using short-time Fourier transforms and manually scanned to locate chopping events. Operator logs were then collected for a ground truth comparison. Results indicate that both infrasound and seismic signals offer the ability to accurately measure this stage of pyroprocessing, though seismic signals are more prominent. Sensor locations are also evaluated to determine where the signal is detectable. This type of monitoring offers a method to aid in safeguards and proliferation detection by validating a pyroprocessing facility’s schedule and identifying activity that does not align with records.

11 - NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Galaxy Clusters Selected via the Sunyaev-Zel'dovich Effect in 5 year data from the SPT-3G Main Survey

We report a new galaxy cluster catalog, selected using the thermal Sunyaev-Zel'dovich (SZ) effect, from 5 years of observations of the SPT-3G Main field. Drawn from arcminute-resolution data with white noise levels of 3.2, 2.5, and 8.9 $μ$K-arcmin at 95, 150, and 220 GHz, respectively, the sample consists of 8,892 cluster candidates detected above significance $ξ=4$, with an expected purity of $>82\%$ (4,480 at $ξ\ge5$ with purity $>99\%$). Using optical and infrared data we have confirmed 7,190 candidates as clusters. The sample spans a mass range $7.9 \times 10^{13}M_\odot/h_{70}< M_\textrm{500c} < 1.6 \times 10^{15}M_\odot/h_{70}$ with a median mass of $1.65 \times 10^{14}M_\odot/h_{70}$, and a redshift range of $0.0371$ and 271 at $z>1.5$. Compared to previous SZ cluster samples from South Pole Telescope and Atacama Cosmology Telescope data, the SPT-3G sample is highly consistent in mass and redshift but is significantly deeper, with per-cluster detection signal-to-noise 2-4 times higher and a cluster density of 4.5 confirmed clusters/deg$^2$. We cross match with eRASS1 cluster and point source catalogs, finding 1,279 and 1,319 matches, respectively. The SPT and eROSITA cluster mass estimates are in relatively good agreement. We perform a series of validation checks using both internal data splits and comparisons to external samples. These tests show increasing correlated (dusty) emission with redshift, with a $\sim17\times$ larger 220 GHz temperature increment for clusters at $z\sim1.5$ than $z\sim0.25$, but only weak evidence for correlated synchrotron emission. Finally, a number of clusters are flagged as candidate strong gravitational lenses.

Bleem, L. E. [Argonne (main); Chicago U., KICP; Ch↗

Fast and bright scintillators for ultrafast materials dynamics using 4th generation synchrotron

We present recent advances in fast and bright scintillators for ultrafast X-ray phase contrast imaging of dynamic materials experiments at the upgraded Advanced Photon Source (APS-U), a fourth generation synchrotron. APS-U enables hard X-ray imaging at frame rates of at least 13 MHz (corresponding to 77 ns or shorter interframe intervals), creating a new need for scintillators with faster response and higher light output than lutetium yttrium oxyorthosilicate (LYSO). For indirect imaging and diffraction with ultrafast cameras, commercial lanthanum bromide (LaBr3) and cerium bromide (CeBr3) are promising candidates. These materials exhibit decay times approximately a factor of two shorter than LYSO (around 40 ns) and lutetium oxyorthosilicate (LSO), while maintaining comparable light yield per incident X-ray photon. However, their implementation at APS-U requires addressing several challenges, including material limitations due to hygroscopicity, efficient optical coupling to imaging systems, and high quantum efficiency for conversion of scintillation light, predominantly at wavelengths below 400 nm, into detectable electronic signals. We report results from material characterization, detector integration and packaging, and beamline experiments of materials with impact. In addition, emerging scintillator classes, including perovskites and high-entropy materials, are discussed as potential alternatives for next-generation ultrafast X-ray diagnostics.

Wang, Zhehui [Los Alamos] (ORCID:0000000178264063)↗

Investigating the Relationship Between Bolide Entry Angle and Apparent Direction of Infrasound Signal Arrivals

Infrasound sensing offers critical capabilities for detecting and geolocating bolide events globally. However, the observed back azimuths, directions from which infrasound signals arrive at stations, often differ from the theoretical expectations based on the bolide’s peak brightness location. For objects with shallow entry angles, which traverse longer atmospheric paths, acoustic energy may be emitted from multiple points along the trajectory, leading to substantial variability in back azimuth residuals. This study investigates how the entry angle of energetic bolides affects the back azimuth deviations, independent of extrinsic factors such as atmospheric propagation, station noise, and signal processing methodologies. A theoretical framework, the Bolide Infrasound Back-Azimuth EXplorer Model (BIBEX-M), was developed to compute predicted back azimuths solely from geometric considerations. The model quantifies how these residuals vary as a function of source-to-receiver distance, revealing that bolides entering at shallow angles, e.g., 10°, can produce average residuals of 20°, with deviations reaching up to 46° at distances below 1000 km, and remaining significant even at 5000 km (up to 8°). In contrast, bolides with steeper entry angles, e.g., > 60°, show smaller deviations, typically under 5° at 1000 km and diminishing to less than ~1° beyond 5000 km. These findings attest to the need for careful interpretation when evaluating signal detections and estimating bolide locations. This work is not only pertinent to bolides but also to other high-energy, extended-duration atmospheric phenomena such as space debris and reentry events, where similar geometric considerations can influence infrasound arrival directions.

Acoustics↗

Estimation of Arrivals on Green at Signalized Intersections Using Stop-Bar Video Detection

Across the world, traffic congestion is increasing with alarming rapidity. Traffic signal control effectiveness, in coordinated networks, is often investigated in relation to the type of vehicle arrivals at the signalized intersections. Recently, several transportation agencies have switched from traditional loop detectors to video detection. When video cameras are accompanied by computer vision, one can extract more information about traffic “dynamics” than by using traditional inductive loop detectors. Collecting arrival times of multiple vehicles after the first arrival at the stop-bar detector might be challenging when using inductive loop detectors (since after the first arrival, detector status is always occupied). However, emerging video detection systems allow tracking of each vehicle’s entrance time in the detection zone, departure time from the detection zone, and the type of vehicle. This information can be used to estimate vehicular arrival and departure times, which then can be fed into machine learning algorithms to estimate arrivals on green (AOG). However, such research ideas have not been documented so far. Thus, this paper presents an estimation model for AOG, which was developed using multigene genetic programming. A robust experimental dataset was collected from a highly calibrated and validated microsimulation model of an 11-intersection corridor in Chattanooga, TN. The results of the model’s performance analysis showed the high accuracy of the training-, testing-, and validation datasets. The practical benefit of this model is that it can be applied to estimate arrival types at intersections where only stop-bar video detection exists.

Engineering↗

Source Physics Experiment: Rock Valley Interferometric Synthetic Aperture RADAR Earthquake Detection Study

Seismic signals from 1993 show a series of magnitude (Mw) 3.7 or less seismic events in Rock Valley on the Nevada National Security Site (NNSS). Historic synthetic aperture radar images of that location were found that could provide interferometric synthetic aperture radar (InSAR) measures of the ground height during 1993. Given this historic SAR imagery, we explore answering the question if ground movement from the 1993 Rock Valley earthquake activity could be sensed by remote sensing means. Finding earthquake surface movement would assist in locating the Rock Valley fault and the 1993 earthquake hypocenter where the Source Physics Experiment Phase III series of experiments will be conducted. In this report, we show that InSAR can sense very small height differences, and for the European Radar Satellite-1 InSAR collections during 1992 and 1993 over Rock Valley earth surface movements were measured with 8 mm uplift and 12.5 mm subsidence over isolated areas. One of these earth movement areas coincides with an InSAR image pair coherence drop between March 5, 1993 and June 18, 1993. The coherence drop is over an approximately 13 square km area south southeast of Skull Mountain centered at 36° 43' 30" N latitude and 116° 05' 00" W longitude. Measured small surface movement and a loss of InSAR coherence may be caused by the series of earthquakes. The location of these InSAR detections may also coincide with water drainage or erosion displacement. There are no records to disambiguate the earthquake and erosion earth surface motion possibilities. Therefore, the InSAR findings of earth surface movement by InSAR are inconclusive.

58 GEOSCIENCES↗

Power Electronics Based Self-Monitoring and Diagnosing for Photovoltaics Systems

Self-monitoring and diagnosing technology for photovoltaic (PV) systems is a method to reduce energy production losses. The proposed technology will enable existing panel-level power optimizers and inverters in a PV system to actively perturb the system, measure its response to these small-signal perturbations, and detect any changes in the small-signal impedances. Impedance measurement will be used to identify specific faults and power degradation trends in a PV panel. This information can be used to instantly alert Operations and Maintenance (O&M) personnel of the need for corrective action, thereby reducing energy production losses earlier relative to standard PV systems.

Panchal, Jeet↗