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At least 307 records · Page 17
All sourcesNASA NTRSDOE OSTI
NASA NTRS2023

Optimizing Retrieval Spaces of Bio-Optical Models for Remote Sensing of Ocean Color

We investigated the optimal number of independent parameters required to accurately represent spectral remote sensing reflectances (𝑅 rs ) by performing principal component analysis on quality controlled in situ and synthetic 𝑅 rs data. We found that retrieval algorithms should be able to retrieve no more than four free parameters from 𝑅 rs spectra for most ocean waters. In addition, we evaluated the performance of five different bio-optical models with different numbers of free parameters for the direct inversion of in-water inherent optical properties (IOPs) from in situ and synthetic 𝑅 rs data. The multi-parameter models showed similar performances regardless of the number of parameters. Considering the computational cost associated with larger parameter spaces, we recommend bio-optical models with three free parameters for the use of IOP or joint retrieval algorithms.

Ocean Color↗
NASA NTRSDate not supplied

NASA GeneLab Multi-study Visualization Portal

NASA GeneLab has helped advance the field of Space Biology by providing a public repository where researchers can store, share, analyze and visualize the results of space flight related omics experiments. The GeneLab data visualization portal allows any user, regardless of bioinformatics knowledge or access to computational resources, to interact with the experimental data, draw their own conclusions, and gain insights about the effects of space on living systems. These tools help democratize scientific research and foster the NASA Open Science initiative. The new multi-study feature of the GeneLab visualization platform allows users to mine study metadata from RNA sequencing (RNA-seq) experiments to identify samples of interest by filtering datasets based on organism, tissue, assay technology type, and/or factor. Once samples are selected from multiple datasets, users can combine and normalize the sample data, then utilize the visualization displays, including Principal Component Analysis (PCA) plots, to assess sample distributions. Finally, users can perform differential gene expression analysis on the combined data and visualize the results through PCA plots, Volcano plots, Pair plots, Heatmap, Ideogram and Gene Set Enrichment Analysis. All user-generated results and visualizations will be available for download. Here, we present a biological study using samples from multiple GeneLab RNA-seq datasets and analyzed using the multi-study visualization platform to demonstrate inter- and intra-study variability, as well as commonly differentially expressed genes between spaceflight and ground control conditions across datasets. This new feature opens a wide range of possibilities and opportunities for further development including combining other assay technology types and integration with batch effect correction techniques and machine learning applications. Overall, this tool allows users to increase the statistical power of individual experiments, validate hypothesis, identify patterns, and opens the door to new and exciting research.

space biology↗
NASA NTRSDate not supplied

Batch Effect Correction Methods for NASA GeneLab Transcriptomic Datasets

RNA sequencing (RNA-seq) data from space biology experiments promise to yield invaluable insights into the effects of spaceflight on terrestrial biology. However, sample numbers from each study are low due to limited crew availability, hardware, and space. To increase statistical power, spaceflight RNA-seq datasets from different missions are often aggregated together. However, this can introduce technical variation or "batch effects", often due to differences in sample handling, sample processing, and sequencing platforms. Several computational methods have been developed to correct for technical batch effects, thereby reducing their impact on true biological signals. In this study, we combined 7 mouse liver RNA-seq datasets from NASA GeneLab (part of the NASA Open Science Data Repository) to evaluate several common batch effect correction methods (ComBat and ComBat-seq from the sva R package, and Median Polish, Empirical Bayes, and ANOVA from the MBatch R package). We quantitatively evaluated the ability of these methods to correct for technical batch variables in space biology RNA-seq data using the following criteria: BatchQC, principal component analysis, dispersion separability criterion, log fold change correlation, and differential gene expression analysis. Each batch variable / correction method combination was then assessed using a custom scoring approach to identify the optimal correction method for the combined dataset, by geometrically probing the space of all allowable scoring functions to yield an aggregate volume-based scoring measure. Finally, we describe the way in which the GeneLab multi-study analysis and visualization portal will allow users to examine the presence or absence of batch effects using multiple metrics. If the user chooses to perform batch effect correction, the scoring approach described here can be implemented to identify the optimal correction method to use for their specific combined dataset prior to analysis.

Lauren M. Sanders↗
NASA NTRSDate not supplied

Enabling Intelligent Data Downlink Prioritization of In-Situ Observations through Generalizable and Computationally Inexpensive Anomaly Detection

High-fidelity measurements of magnetic fields and other observed properties, such as energetic particle fluxes, are a necessary component to our understanding of the highly dynamic near-Earth space environment. As our desire to study smaller-scale phenomena such as shocks and dipolorizations has increased, we have been driven to take and telemeter measurements at higher cadences. Unfortunately, many missions are unable to downlink all their captured data due to the well-known data transmission bottleneck at the DSN. These missions must then prioritize their high-cadence data such that the most scientifically useful intervals are transmitted. One simple prioritization technique uses the spacecraft position to telemeter data from only the region of interest. Although easy to implement, this method does not leverage the available scientific data and can omit intervals of useful scientific data when they lie outside the region of interest. The Magnetospheric Multiscale Mission (MMS) uses mission-specific parameterization of several data products to automatically prioritize scientifically useful intervals. Then, MMS verifies the automatically selected intervals by having a domain expert manually select intervals for downlink. The overall complexity required by this technique make it prohibitive for deployment on low-cost platforms (i.e., CubeSats) or on future missions featuring large constellations of satellites such as the Geospace Dynamics Constellation (GDC). We present preliminary results for a simple, generic, and data-driven method of downlink prioritization for magnetic field (and other) measurements. Specifically, Principal Components Analysis (PCA) and One-Class Support Vector Machines (OC-SVMs) are used to detect intervals containing anomalous activity, which can then be prioritized for subsequent downlink. The computational simplicity of this algorithm makes it an excellent candidate for implementation on spaceflight hardware, as well as provide generalizability to a broad range of missions and data products. Initial analysis of this technique has been performed using magnetic field measurements from the Magnetospheric Multiscale Mission and CASSIOP, where it automatically identified scientifically interesting intervals containing Alfvén waves and EMIC activity.

Matthew G. Finley↗
NASA NTRSDate not supplied

Machine learning based noise reduction for satellite products: application to solar-induced fluorescence retrievals using simulated and real data

In the past two decades, global satellite measurements of terrestrial chlorophyll solar-induced fluorescence (SIF) have been used widely for a number of different applications related to physiology, phenology, and productivity of plants. However, SIF retrievals are inherently noisy due to the relatively small SIF spectral signature in comparison with observational noise. In this work, we examine how a spectral-based approach that employs principal component analysis along with a relatively shallow artificial neural network can be used to reduce noise and other artifacts in satellite level 2 (L2) products. We first apply the approach in a controlled environment in which radiance spectra are simulated with a full atmospheric and surface radiative transfer model for different scenarios including various SIF values that are known. Various levels of noise can be added to the simulated spectra. Resulting noisy and noise-reduced SIF retrievals are compared with the true values to assess performance. We then apply the noise reduction approach to real SIF derived from instruments flying on meteorological satellites. The results are evaluated by comparing SIF retrievals from different platforms with each other and with other independent data sets, showing enhanced capability to capture seasonal and interannual variability in SIF.

Chlorophyll fluorescence↗
NASA NTRSDate not supplied

Global SO 2 Data Record from OMPS Instruments on the JPSS Constellation

NASA’s Earth Observing System (EOS) SO 2 climate data record (CDR) started in 2004, with the launch of the Aura/Ozone Monitoring Instrument (OMI) and is now being continued with the SNPP/Ozone Mapping and Profiler Suite (OMPS) launched in 2011. Both OMI and SNPP/OMPS SO 2 CDRs are produced with the Goddard principal component analysis (PCA) spectral fitting algorithm. An advantage of the data-driven PCA retrieval technique is that it enables highly consistent retrievals from different instruments, by inherently accounting for various instrumental factors. To further extend the EOS SO 2 CDR, we are implementing the PCA SO 2 retrieval algorithm with the L1B measurements from OMPS instruments flying on the Joint Polar Satellite System (JPSS) constellation. In this presentation, we will provide an update on our progress in NOAA-20 (launched in 2017) and NOAA-21 (launched in 2022) PCA SO2 retrievals. We will focus on our new NOAA-20/OMPS PCA SO 2 EOS continuity product, to be publicly released in fall of 2023. We will present statistical analyses on the quality of NOAA-20 PCA SO 2 product, including retrieval noise, biases over background areas, and long-term stability. We will compare our PCA SO 2 retrievals from NOAA-20 with those from OMI, SNPP/OMPS, and S5P/TROPOMI (TROPOspheric Monitoring Instrument) for anthropogenic sources as well as large volcanic plumes. We will also discuss the application of a new machine learning technique that helps to further reduce the noise of NOAA-20 SO 2 retrievals. In addition, we will present preliminary PCA SO 2 retrievals from NOAA-21/OMPS, including those from direct readout implementation for aviation disaster avoidance. Finally, we will share some first results applying the PCA algorithm to NASA’s geostationary TEMPO (Tropospheric Emissions: Monitoring of Pollution) instrument to obtain hourly, high resolution SO 2 data over North America.

SO2↗
NASA NTRSDate not supplied

Continuing Long-term Global SO 2 Data Record with JPSS OMPS Instruments

NASA’s long-term Earth Observing System (EOS) SO 2 climate data record (CDR) started with Aura/Ozone Monitoring Instrument (OMI, launched in 2004) and is now being continued with the SNPP/Ozone Mapping and Profiler Suite (OMPS, launched in 2011). Both OMI and SNPP/OMPS SO 2 CDRs are produced with the Goddard principal component analysis (PCA) spectral fitting algorithm. By inherently accounting for various instrumental factors, the PCA technique enables highly consistent retrievals between different instruments. In this presentation, we will provide an overview on our effort to further extend the EOS SO 2 CDR, by implementing the PCA SO 2 algorithm with multiple OMPS instruments flying on the Joint Polar Satellite System (JPSS) constellation, including NOAA-20 (launched in 2017) and NOAA-21 (launched in 2022). We will present results analyzing our new NOAA-20/OMPS PCA SO 2 EOS continuity product, to be publicly released in fall of 2023. We will show statistical analyses on the quality of NOAA-20 PCA SO 2 product, such as retrieval noise, biases over background areas, and long-term stability. We will employ a previously established top-down method to estimate SO2 emissions from selected large point sources, using NOAA-20 SO 2 retrievals and assimilated wind fields as input. The SO 2 emission estimates derived from NOAA-20 retrievals will be compared with those from OMI, SNPP/OMPS, and S5P/TROPOMI (TROPOspheric Monitoring Instrument). We will also demonstrate the application of a new machine learning technique that further reduces the noise of NOAA-20 SO 2 retrievals. Finally, we will present preliminary PCA SO 2 retrievals from recently launched satellite sensors, including NOAA-21/OMPS and NASA’s geostationary TEMPO (Tropospheric Emissions: Monitoring of Pollution) instrument.

SO2↗
NASA NTRSDate not supplied

Enabling Intelligent Data Downlink Prioritization of In-Situ Observations through Generalizable and Computationally Inexpensive Anomaly Detection

High-fidelity measurements of magnetic fields and other observed properties, such as energetic particle fluxes, are a necessary component to our understanding of the highly dynamic near-Earth space environment. As our desire to study smaller-scale phenomena such as shocks and dipolorizations has increased, we have been driven to take and telemeter measurements at higher cadences. Unfortunately, many missions are unable to downlink all their captured data due to the well-known data transmission bottleneck at the DSN. These missions must then prioritize their high-cadence data such that the most scientifically useful intervals are transmitted. One simple prioritization technique uses the spacecraft position to telemeter data from only the region of interest. Although easy to implement, this method does not leverage the available scientific data and can omit intervals of useful scientific data when they lie outside the region of interest. The Magnetospheric Multiscale Mission (MMS) uses mission-specific parameterization of several data products to automatically prioritize scientifically useful intervals. Then, MMS verifies the automatically selected intervals by having a domain expert manually select intervals for downlink. The overall complexity required by this technique make it prohibitive for deployment on low-cost platforms (i.e., CubeSats) or on future missions featuring large constellations of satellites such as the Geospace Dynamics Constellation (GDC). We present preliminary results for a simple, generic, and data-driven method of downlink prioritization for magnetic field (and other) measurements. Specifically, Principal Components Analysis (PCA) and One-Class Support Vector Machines (OC-SVMs) are used to detect intervals containing anomalous activity, which can then be prioritized for subsequent downlink. The computational simplicity of this algorithm makes it an excellent candidate for implementation on spaceflight hardware, as well as provide generalizability to a broad range of missions and data products. Initial analysis of this technique has been performed using magnetic field measurements from the Magnetospheric Multiscale Mission and CASSIOP, where it automatically identified scientifically interesting intervals containing Alfvén waves and EMIC activity.

Matthew G. Finley↗
NASA NTRS2024

Cali Urban Development II: Investigating the Impacts of Land Use Change on Urban Heat and Social Vulnerability in Cali, Colombia

The surface urban heat island (SUHI) effect is an environmental phenomenon resulting in cities with higher temperatures than rural areas due to increased pavement and decreased cooling from vegetation. The city of Santiago de Cali in Colombia faces SUHI challenges exacerbated by land use change. The Cali municipal government agency, Departamento Administrativo de Gestión del Medio Ambiente, and the community organization Fundacion Dinamizadores Ambientales partnered with NASA DEVELOP to evaluate communities in Cali most vulnerable to urban heat. This project illustrated the utility of using NASA Earth observations to evaluate the relationship between land use, temperature, and social factors in Cali, Colombia between 2013 and 2023. The team used Landsat 7 Enhanced Thematic Mapper Plus (ETM+), Landsat 8 Operational Land Imager (OLI) and Thermal Infrared Sensor (TIRS), and Landsat 9 OLI-2/TIRS-2 to generate land surface temperature (LST) maps in Google Earth Engine through NASA DEVELOP’s Urban Heat Exposure Assessment Tempe 2.0 tool. Cloud cover limited the project feasibility, but it improved with Landsat 9 data. In ArcGIS Pro, the team found that LST was significantly higher in urban areas than in wetlands or forests. Using R Studio, the team ran a principal component analysis and found that health care and green space access were negatively correlated, and Afro-Colombian ethnicity was positively correlated with LST. With knowledge of the most impacted and vulnerable regions, the partner organizations can prioritize establishing healthcare facilities and green spaces in those areas to reduce the impacts of urban heat.

vegetation loss↗
NASA NTRSDate not supplied

Monitoring and Assessing Heat Vulnerability to Identify Locations for Heat Mitigation Efforts in Sarasota, Florida

Located in the coastal subtropical region, Florida’s Sarasota County receives plenty of sunlight for more than half of the year. However, the ongoing rise in summer temperatures attributed to climate change poses an increasing vulnerability to extreme heat for the residents. Moreover, the area's high relative humidity exacerbates the discomfort of high temperatures, thereby intensifying the severity of heat events and elevating the risks of heat-related illnesses. Our collaborations with Sarasota County Sustainability underscore shared concerns about the impact of urban heat island (UHI) on the community. We utilized Earth observation data from NASA Landsat 8 and Landsat 9’s Thermal Infrared Sensors (TIRS) and the International Space Station’s Ecosystem Spaceborne Thermal Radiometer Experiment on Space Station (ECOSTRESS) to model UHI effects within the county during the summer from 2019 to 2023. By implementing the open-source Integrated Valuation of Ecosystem Services and Tradeoffs (InVEST) Urban Cooling software model, ArcGIS ModelBuilder, and principal component analysis, we identified the land surface temperature variance within the county and areas that are least capable of mitigating the effects of UHI. In addition, we use socioeconomic and demographic data as indicators to quantify vulnerability at the census tract level. The results revealed that heat intensity varies significantly across Sarasota County, with the highest temperatures being in the more developed western part of the region. We pinpointed that at least three vulnerable communities reside in high-heat regions: North Sarasota, Venice, and North Port. These areas demonstrate a confluence between socioeconomic sensitivity and environmental hazard, indicating a high priority in future heat mitigation efforts.

Theresia Phoa↗
NASA NTRS1985

Comparative techniques used to evaluate Thematic Mapper data for land cover classification in Logan County, West Virginia

Several digital data processing techniques were evaluated in an effort to identify and map active/abandoned, partially reclaimed, and fully revegetated surface mine areas in the central portion of Logan County. The TM data were first subjected to various enhancement procedures, including a linear contrast stretch, principal components and canonical analysis transformations. At the same time, four general procedures were followed to produce six classifications as a means of comparing the techniques involved. Preliminary results show that various feature extraction/data reduction techniques provide classification results equal or superior to the more straightforward unsupervised clustering technique. Analyst interaction time for labelling clusters is reduced using the canonical analysis and principal components procedures, though the canonical technique has clearly produced better results to date.

Brumfield, J. O.↗
NASA NTRSDate not supplied

NO2 Anomalies - Economy Attribution and Rapid Climate Response

Using principal component (PC) analysis of 16 years of monthly series of NO2 from OMI/Aura, we show that it is the third PC (PC3) from the full hierarchy of principal modes that is best coupled with the economic indicators. This coupling is positive, i.e. PC3 and economic indicators manifest positive covariance. However, the economic variability can explain only 40% of the information in PC3. Furthermore, this mode by itself explains only 3% of the total deseasonalized NO2 variability. We thus conclude that, while having an unambiguous impact, the economy can be awarded at best third order of importance in driving the deseasonalized NO2 series, i.e. after seasonal variability is removed from the series. Once we identified PC3 as the NO2 mode that is coupled with economic variability, we use this mode as an indicator and look for rapid climate adjustments to that part of NO2 variability that we are confident is coupled with the economic variability. We focus on observational data from the Atmospheric Infrared Sounder (AIRS) on board of NASA Aqua satellite, decompose series of surface skin temperature and clear-sky outgoing longwave radiances (OLR) into principal components, and identify potential impacts of NO2 PC3 on these climate variables.

NO2↗
NASA NTRSDate not supplied

NO2 Anomalies - Economy Attribution and Rapid Climate Response

Using principal component (PC) analysis of 16 years of monthly series of NO2 from OMI/Aura, we show that it is the third PC (PC3) from the full hierarchy of principal modes that is best coupled with the economic indicators. This coupling is positive, i.e. PC3 and economic indicators manifest positive covariance. However, the economic variability can explain only 40%of the information in PC3. Furthermore, this mode by itself explains only 3% of the total deseasonalized NO2 variability. We thus conclude that, while having an unambiguous impact, the economy can be awarded at best third order of importance in driving the deseasonalized NO2 series, i.e. after seasonal variability is removed from the series. Once we identified PC3 as the NO2 mode that is coupled with economic variability, we use this mode as an indicator and look for rapid climate adjustments to that part of NO2 variability that we are confident is coupled with the economic variability. We focus on observational data from the Atmospheric Infrared Sounder (AIRS) on board of NASA Aqua satellite, decompose series of surface skin temperature and clear-sky outgoing longwave radiances (OLR) into principal components, and identify potential impacts of NO2 PC3 on these climate variables.

NO2↗
NASA NTRS1982

The Use of Principal Components for Creating Improved Imagery for Geometric Control Point Selection

A directed principal component (PC) analysis and its transformation was applied to 7-channel thematic mapper simulator (TMS) data and 4-channel LANDSAT multispectral scanner system (MSS) data collected over the city of Lancaster, Pennsylvania, to create improved imagery for geometric control point selection for image to image registration. Nineteen temporally stable geometric control points, such as road interactions and bridges, were selected for a 236 sq km area. The control points were visible on both the TMS and MSS imagery. On the first attempt the corresponding image control points were selected on both data sets without using the principal components transformation. Many of the road intersection locations were visible but the actual road crossings could not be distinguished. As a result, mensuration errors using raw data exceeded the equivalent of two (79 x 79 m) pixels. The application of a guided principal components transformation yielded TMS and MSS single band images showing improved detail in the scene's urban and residential infrastructure. The PC transformed data sets were then utilized for the reselection of geometric control points. By shown greater detail, control points on both the TMS and MSS imagery could be located with greater precision using the PC transformed data.

Imhoff, M. L.↗
NASA NTRS2003

Enabling computer decisions based on EEG input

Multilayer neural networks were successfully trained to classify segments of 12-channel electroencephalogram (EEG) data into one of five classes corresponding to five cognitive tasks performed by a subject. Independent component analysis (ICA) was used to segregate obvious artifact EEG components from other sources, and a frequency-band representation was used to represent the sources computed by ICA. Examples of results include an 85% accuracy rate on differentiation between two tasks, using a segment of EEG only 0.05 s long and a 95% accuracy rate using a 0.5-s-long segment.

Validation Studies↗
NASA NTRS1977

Statistical evaluation of control inputs and eye movements in the use of instruments clusters during aircraft landing

Two different types of analyses were done on data from a study in which eye movements and other variables were recorded while four pilots executed landing sequences in a Boeing 737 simulation. Various conditions were manupulated, including changes in turbulence, starting position, and instrumentation. Control inputs were analyzed in the context of the various conditions and compared against ratings of workload obtained using the Cooper-Harper scale. A number of eye-scanning measures including mean dwell time and transition from one instrument to another were entered into a principal components factor analysis. The results show a differentiation between control inputs and eye-scanning behavior. This shows the need for improved definition of workload and experiments to uncover the important differences among control inputs, eye-scanning and cognitive processes of the pilot.

Dick, A. O.↗
NASA NTRS1984

Final Comparison of TM and MSS Data for Surface Mine Assessment in Logan County, West Virginia

A variety of classifications during both raw and transformed MSS and TM data sets from 4 September 1982 were performed for the Logan County, West Virginia study area. The object was to compare the utility of TM and MSS data for delineating small, irregular ground features, particularly surface mines, and also to test data reduction/transformation techniques (band selection, canonical analysis, and principal components) in relation to a traditional means of unsupervised classification. Statistical results demonstrate that, on the average, the TM classifications yielded an overall .53 factor of improvement relative to the MSS classifications. When the accuracies for only three minor (in terms of areal extent) land use categories are examined, the factor of improvement for TM over MSS increases to 1.48; i.e., the TM is nearly one and one-half times better than the MSS for delineating small and irregular ground features such as contour strip mines.

Witt, R. G.↗