Building the World's Most Advanced Light Source
View this time-lapse video showing construction of the National Synchrotron Light Source II at Brookhaven National Laboratory. Construction is shown from 2009-2012.
43 PARTICLE ACCELERATORS↗
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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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DoZen Documentation
DoZen (pronounced “do zen”) is for processing, visualizing, and exploring electromagnetic data that is stored in Zonge’s .z3d format. It was created specifically for processing time-lapse controlled source electromagnetic data.
97 MATHEMATICS AND COMPUTING↗
Effect of dry large‐scale vertical motions on initial MJO convective onset
Abstract Anomalies of eastward propagating large‐scale vertical motion with ~30 day variability at Addu City, Maldives, move into the Indian Ocean from the west and are implicated in Madden‐Julian Oscillation (MJO) convective onset. Using ground‐based radar and large‐scale forcing data derived from a sounding array, typical profiles of environmental heating, moisture sink, vertical motion, moisture advection, and Eulerian moisture tendency are computed for periods prior to those during which deep convection is prevalent and those during which moderately deep cumulonimbi do not form into deep clouds. Convection with 3–7 km tops is ubiquitous but present in greater numbers when tropospheric moistening occurs below 600 hPa. Vertical eddy convergence of moisture in shallow to moderately deep clouds is likely responsible for moistening during a 3–7 day long transition period between suppressed and active MJO conditions, although moistening via evaporation of cloud condensate detrained into the environment of such clouds may also be important. Reduction in large‐scale subsidence, associated with a vertical velocity structure that travels with a dry eastward propagating zonal wavenumbers 1–1.5 structure in zonal wind, drives a steepening of the lapse rate below 700 hPa, which supports an increase in moderately deep moist convection. As the moderately deep cumulonimbi moisten the lower troposphere, more deep convection develops, which itself moistens the upper troposphere. Reduction in large‐scale subsidence associated with the eastward propagating feature reinforces the upper tropospheric moistening, helping to then rapidly make the environment conducive to formation of large stratiform precipitation regions, whose heating is critical for MJO maintenance.
Powell, Scott W.↗
The influence of water table depth and the free atmospheric state on convective rainfall predisposition
Here, we report a mechanistic model for the soil-plant system is coupled to a conventional slab representation of the atmospheric boundary layer (ABL) to explore the role of groundwater table (WT) variations and free atmospheric (FA) states on convective rainfall predisposition (CRP) at a Loblolly pine plantation site situated in the lower coastal plain of North Carolina. Predisposition is quantified using the crossing between modeled lifting condensation level (LCL) and convectively grown ABL depth. The LCL-ABL depth crossing is necessary for air saturation but not sufficient for cloud formation and subsequent convective rainfall occurrence. However, such crossing forms the main template for which all subsequent dynamical processes regulating the formation (or suppression) of convective rainfall operate on. If the feedback between surface fluxes and FA conditions is neglected, a reduction in latent heat flux associated with reduced WT levels is shown to enhance the ABL-LCL crossing probability. When the soil-plant system is fully coupled with ABL dynamics thereby allowing feedback with ABL temperature and humidity, FA states remain the leading control on CRP. However, vegetation water stress plays a role in controlling ABL-LCL crossing when the humidity supply by the FA is within an intermediate range of values. When FA humidity supply is low, cloud formation is suppressed independent of surface latent heat flux. Similarly, when FA moisture supply is high, cloud formation can occur independent of surface latent heat flux. In an intermediate regime of FA moisture supply, the surface latent heat flux controlled by soil water availability can supplement (or suppress) the necessary water vapor leading to reduced LCL and subsequent ABL-LCL crossing. Lastly, it is shown that this intermediate state corresponds to FA values around the mode in observed humidity lapse rates γ w (between -2.5 × 10 -6 and -1.5 × 10 -6 kg kg -1 m -1 ), suggesting that vegetation water uptake may be controlling CRP at the study site.
54 ENVIRONMENTAL SCIENCES↗
A harmonic pulse testing method for leakage detection in deep subsurface storage formations
Abstract Detection of leakage in deep geologic storage formations (e.g., carbon sequestration sites) is a challenging problem. This study investigates an easy‐to‐implement frequency domain leakage detection technology based on harmonic pulse testing (HPT). Unlike conventional constant‐rate pressure interference tests, HPT stimulates a reservoir using periodic injection rates. The fundamental principle underlying HPT‐based leakage detection is that leakage modifies a storage system's frequency response function, thus providing clues of system malfunction. During operations, routine HPTs can be conducted at multiple pulsing frequencies to obtain experimental frequency response functions, using which the possible time‐lapse changes are examined. In this work, a set of analytical frequency response solutions is derived for predicting system responses with and without leaks for single‐phase flow systems. Sensitivity studies show that HPT can effectively reveal the presence of leaks. A search procedure is then prescribed for locating the actual leaks using amplitude and phase information obtained from HPT, and the resulting optimization problem is solved using the genetic algorithm. For multiphase flows, the applicability of HPT‐based leakage detection procedure is exemplified numerically using a carbon sequestration problem. Results show that the detection procedure is applicable if the average reservoir conditions in the testing zone stay relatively constant during the tests, which is a working assumption under many other interpretation methods for pressure interference tests. HPT is a cost‐effective tool that only requires periodic modification of the nominal injection rate. Thus it can be incorporated into existing monitoring plans with little additional investment.
Sun, Alexander Y.↗
P and S wave responses of bacterial biopolymer formation in unconsolidated porous media
This study investigated the P and S wave responses and permeability reduction during bacterial biopolymer formation in unconsolidated porous media. Column experiments with fine sands, where the model bacteria Leuconostoc mesenteroides were stimulated to produce insoluble biopolymer, were conducted while monitoring changes in permeability and P and S wave responses. The bacterial biopolymer reduced the permeability by more than 1 order of magnitude, occupying ~10% pore volume after 38 days of growth. This substantial reduction was attributed to the bacterial biopolymer with complex internal structures accumulated at pore throats. S wave velocity (V S ) increased by more than ~50% during biopolymer accumulation; this indicated that the bacterial biopolymer caused a certain level of stiffening effect on shear modulus of the unconsolidated sediment matrix at low confining stress conditions. Whereas replacing pore water by insoluble biopolymer was observed to cause minimal changes in P wave velocity (VP) due to the low elastic moduli of insoluble biopolymer. The spectral ratio analyses revealed that the biopolymer formation caused a ~50-80% increase in P wave attenuation (1/Q P ) at the both ultrasonic and subultrasonic frequency ranges, at hundreds of kHz and tens of kHz, respectively, and a ~50-60% increase in S wave attenuation (1/Q S ) in the frequency band of several kHz. Our results reveal that in situ biopolymer formation and the resulting permeability reduction can be effectively monitored by using P and S wave attenuation in the ultrasonic and subultrasonic frequency ranges. Finally, this suggests that field monitoring using seismic logging techniques, including time-lapse dipole sonic logging, may be possible.
58 GEOSCIENCES↗
The emergence of hydrogeophysics for improved understanding of subsurface processes over multiple scales
Geophysics provides a multidimensional suite of investigative methods that are transforming our ability to see into the very fabric of the subsurface environment, and monitor the dynamics of its fluids and the biogeochemical reactions that occur within it. Here we document how geophysical methods have emerged as valuable tools for investigating shallow subsurface processes over the past two decades and offer a vision for future developments relevant to hydrology and also ecosystem science. The field of “hydrogeophysics” arose in the late 1990s, prompted, in part, by the wealth of studies on stochastic subsurface hydrology that argued for better field-based investigative techniques. These new hydrogeophysical approaches benefited from the emergence of practical and robust data inversion techniques, in many cases with a view to quantify shallow subsurface heterogeneity and the associated dynamics of subsurface fluids. Furthermore, the need for quantitative characterization stimulated a wealth of new investigations into petrophysical relationships that link hydrologically relevant properties to measurable geophysical parameters. Development of time-lapse approaches provided a new suite of tools for hydrological investigation, enhanced further with the realization that some geophysical properties may be sensitive to biogeochemical transformations in the subsurface environment, thus opening up the new field of “biogeophysics.” Early hydrogeophysical studies often concentrated on relatively small “plot-scale” experiments. More recently, however, the translation to larger-scale characterization has been the focus of a number of studies. In conclusion, geophysical technologies continue to develop, driven, in part, by the increasing need to understand and quantify key processes controlling sustainable water resources and ecosystem services.
58 GEOSCIENCES↗
Longitudinal Single‐Cell Imaging of Engineered Strains with Stimulated Raman Scattering to Characterize Heterogeneity in Fatty Acid Production
Abstract Understanding metabolic heterogeneity is critical for optimizing microbial production of valuable chemicals, but requires tools that can quantify metabolites at the single‐cell level over time. Here, longitudinal hyperspectral stimulated Raman scattering (SRS) chemical imaging is developed to directly visualize free fatty acids in engineered Escherichia coli over many cell cycles. Compositional analysis is also developed to estimate the chain length and unsaturation of the fatty acids in living cells. This method reveals substantial heterogeneity in fatty acid production among and within colonies that emerges over the course of many generations. Interestingly, the strains display distinct types of production heterogeneity in an enzyme‐dependent manner. By pairing time‐lapse and SRS imaging, the relationship between growth and production at the single‐cell level are examined. The results demonstrate that cell‐to‐cell production heterogeneity is pervasive and provides a means to link single‐cell and population‐level production.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Variability in observed stable water isotopes in snowpack across a mountainous watershed in Colorado
In this study, isotopic information from 81 snowpits was collected over a 5-year period in a large, Colorado watershed. Data spans gradients in elevation, aspect, vegetation, and seasonal climate. They are combined with overlapping campaigns for water isotopes in precipitation and snowmelt, and a land-surface model for detailed estimates of snowfall and climate at sample locations. Snowfall isotopic inputs, describe the majority of δ18O snowpack variability. Aspect is a secondary control, with slightly more enriched conditions on east and north facing slopes. This is attributed to preservation of seasonally enriched snowfall and vapour loss in the early winter. Sublimation, expressed by decreases in snowpack d-excess in comparison to snowfall contributions, increases at low elevation and when seasonal temperature and solar radiation are high. At peak snow accumulation, post-depositional fractionation appears to occur in the top 25 ± 14% of the snowpack due to melt-freeze redistribution of lighter isotopes deeper into the snowpack and vapour loss to the atmosphere during intermittent periods of low relative humidity and high windspeed. Relative depth of fractionation increases when winter daytime temperatures are high and winter precipitation is low. Once isothermal, snowpack isotopic homogenization and enrichment was observed with initial snowmelt isotopically depleted in comparison to snowpack and enriching over time. The rate of δ18O increase (d-excess decrease) in snowmelt was 0.02‰ per day per 100-m elevation loss. Isotopic data suggests elevation dictates snowpack and snowmelt evolution by controlling early snow persistence (or absence), isotopic lapse rates in precipitation and the ratio of energy to snow availability. Hydrologic tracer studies using stable water isotopes in basins of large topographic relief will require adjustment for these elevational controls to properly constrain stream water sourcing from snowmelt.
54 ENVIRONMENTAL SCIENCES↗
Outcomes of Percutaneous Management of Anastomotic Ureteral Strictures in Renal Transplantation: Chronic Nephroureteral Stent Placement with and without Balloon Dilatation
PurposeThis study was designed o evaluate outcomes of percutaneous management of anastomotic ureteral strictures in renal transplants using nephroureteral stents with or without balloon dilatation.MethodsA retrospective audit of 1,029 consecutive renal transplants was performed. Anastomotic ureteral strictures were divided into two groups: nephroureteral stent only (NUS) and NUS+PTA (nephroureteral stent plus percutaneous transluminal angioplasty), with each cohort subdivided into early versus late presentation (obstructive uropathy occurring <90 day or >90 days from transplant, respectively). Overall and 6-month technical success were defined as removal of NUS any time with <30 % residual stenosis (any time lapse less or more than 6 months) and at >6 months, respectively. Patency was evaluated from NUS removal to last follow-up for both groups and compared.ResultsSixty-seven transplant patients with 70 ureteric anastomotic strictures (6.8 %, n = 70/1,029) underwent 72 percutaneous treatments. 34 % were late (>90 days, n = 24/70), and 66 % were early (<90 days, n = 46/70). Overall technical success was 82 % (n = 59/72) and 6-month success was 58 % (n = 42/72). Major and minor complications were 2.8 % (n = 2/72), and 12.5 % (n = 9/72). NUS+PTA did not improve graft survival (p = 0.354) or patency (p = 0.9) compared with NUS alone. There was no difference in graft survival between treated and nontreated groups (p = 0.74).ConclusionsThere is no advantage to PTA in addition to placement of NUS, although PTA did not negatively impact graft survival or long-term patency and both interventions were safe and effective. Neither the late or early groups benefited from PTA in addition to NUS. Earlier obstructions showed greater improvement in serum creatinine than later obstructions.
62 RADIOLOGY AND NUCLEAR MEDICINE↗
Amino mapping: possibility to visualize amino-N compounds in the rhizosphere of Zea Mays L.
Abstract Understanding N uptake by plants, the N cycle, and their relationship to soil heterogeneity has generated a great deal of interest in the distribution of amino-N compounds in soil. Visualization of the spatial distribution of amino-N in soil can provide insights into the role of labile N in plant-microbial mechanisms of N acquisition and plant N uptake, but until now, it has remained technically challenging. Here, we describe a novel technique to visualize the amino-N distribution at the root-soil interface. The technique is based on time-lapse amino mapping (TLAM) using membranes saturated with the fluorogenic OPAME reagent (O-phthalaldehyde and β-mercaptoethanol). OPAME in the membrane reacts with organic compounds containing a NH 2 functional group at the membrane-soil interface, generating a fluorescent product visible under UV light and detectable by a digital camera. The TLAM amino-mapping technique was applied to visualize and quantify the concentration of amino-N compounds in the rhizosphere of maize (Zea MaysL.). A ten times greater amino-N concentration was detected in the rhizosphere compared to non-rhizosphere soil. The high content of amino-N was mainly associated with the root tips and was 3 times larger than the average amino-N content at seminal roots. The amino-N rhizosphere was 2 times broader around the root tips than around other parts of the roots. We concluded that TLAM is a promising approach for monitoring the fate of labile N in soils. However, the technique needs to be standardized for different soil types, plant species, and climate conditions to allow wider application.
Agriculture↗
The strength of the tropical inversion and its response to climate change in 18 CMIP5 models
In this work, we examine the tropical inversion strength, measured by the estimated inversion strength (EIS), and its response to climate change in 18 models associated with phase 5 of the coupled model intercomparison project (CMIP5). While CMIP5 models generally capture the geographic distribution of observed EIS, they systematically underestimate it off the west coasts of continents, due to a warm bias in sea surface temperature. The negative EIS bias may contribute to the low bias in tropical low-cloud cover in the same models. Idealized perturbation experiments reveal that anthropogenic forcing leads directly to EIS increases, independent of “temperature-mediated” EIS increases associated with long-term oceanic warming. This fast EIS response to anthropogenic forcing is strongly impacted by nearly instantaneous continental warming. The temperature-mediated EIS change has contributions from both uniform and non-uniform oceanic warming. The substantial EIS increases in uniform oceanic warming simulations are due to warming with height exceeding the moist adiabatic lapse rate in tropical warm pools. EIS also increases in fully-coupled ocean–atmosphere simulations where CO 2 concentration is instantaneously quadrupled, due to both fast and temperature-mediated changes. The temperature-mediated EIS change varies with tropical warming in a nonlinear fashion: The EIS change per degree tropical warming is much larger in the early stage of the simulations than in the late stage, due to delayed warming in the eastern parts of the subtropical oceans. Given the importance of EIS in regulating tropical low-cloud cover, this suggests that the tropical low-cloud feedback may also be nonlinear.
54 ENVIRONMENTAL SCIENCES↗
Review: Some low-frequency electrical methods for subsurface characterization and monitoring in hydrogeology
Low-frequency geoelectrical methods include mainly self-potential, resistivity, and induced polarization techniques, which have potential inmany environmental and hydrogeological applications. They provide complementary information to each other and to in-situ measurements. The self-potential method is a passive measurement of the electrical response associated with the in-situ generation of electrical current due to the flow of pore water in porous media, a salinity gradient, and/or the concentration of redoxactive species. Under some conditions, this method can be used to visualize groundwater flow, to determine permeability, and to detect preferential flow paths. Electrical resistivity is dependent on the water content, the temperature, the salinity of the pore water, and the clay content and mineralogy. Time-lapse resistivity can be used to assess the permeability and dispersivity distributions and to monitor contaminant plumes. Induced polarization characterizes the ability of rocks to reversibly store electrical energy. It can be used to image permeability and to monitor chemistry of the pore water-minerals interface. These geophysical methods, reviewed in this paper, should always be used in concert with additional in-situ measurements (e.g. in-situ pumping tests, chemical measurements of the pore water), for instance through joint inversion schemes, which is an area of fertile on-going research.
Revil, Andre↗
Hydrological response and thermal effect of karst springs linked to aquifer geometry and recharge processes
To be better understand the hydrological and thermal behavior of karst systems in South China, seasonal variations in flow, hydrochemistry and stable isotope ratios of five karst springs were used to delineate flow paths and recharge processes, and to interpret their thermal response. Isotopic data suggest that mean recharge elevations are 200–820 m above spring outlets. Springs that originate from high elevations have lower NO{sub 3}{sup −} concentrations than those originating from lower areas that have more agricultural activity. Measured Sr{sup 2+} concentrations reflect the strontium contents of the host carbonate aquifer and help delineate the spring catchment’s saturated zone. Seasonal variations of NO{sub 3}{sup −} and Sr{sup 2+} concentrations are inversely correlated, because the former correlates with event water and the latter with baseflow. The mean annual water temperatures of springs were only slightly lower than the local mean annual surface temperature at the outlet elevations. These mean spring temperatures suggest a vertical gradient of ~6 °C/vertical km, which resembles the adiabatic lapse rate of the Earth’s stable atmosphere. Seasonal temperature variations in the springs are in phase with surface air temperatures, except for Heilongquan (HLQ) spring. Event-scale variations of thermal response are dramatically controlled by the circulation depth of karst systems, which determines the effectiveness of heat exchange. HLQ spring undergoes the deepest circulation depth of 820 m, and its thermal responses are determined by the thermally effective regulation processes at higher elevations and the mixing processes associated with thermally ineffective responses at lower elevations.
58 GEOSCIENCES↗
Microscale Confinement features in microfluidic devices can affect biofilm
Biofilms are aggregations of microbes that are encased by extra-cellular polymeric substances (EPS) and adhere to surfaces and interfaces. Biofilm development on abiotic surfaces is a dynamic process, which typically proceeds through an initial phase of adhesion of plankntonic microbes to the substrate, followed by events such as growth, maturation and EPS secretion. However, the coupling of hydrodynamics, microbial adhesion and biofilm growth remain poorly understood. Here, we investigate the effect of semiconfined features on biofilm formation. Using a microfluidic device and fluorescent time-lapse microscopy, we establish that confinement features can significantly affect biofilm formation. Biofilm dynamics change not only as a function of confinement features, but also of the total fluid flow rate, and our combination of experimental results and numerical simulations reveal insights into the link between hydrodynamics and biofilm formation.
biofilm↗
Image Processing Pipeline for Fluoroelastomer Crystallite Detection in Atomic Force Microscopy Images
Phase transformations in materials systems can be tracked using atomic force microscopy (AFM), enabling the examination of surface properties and macroscale morphologies. In situ measurements investigating phase transformations generate large datasets of time-lapse image sequences. The interpretation of the resulting image sequences, guided by domain-knowledge, requires manual image processing using handcrafted masks. Here this approach is time-consuming and restricts the number of images that can be processed. Her in this study, we developed an automated image processing pipeline which integrates image detection and segmentation methods. We examine five time-series AFM videos of various fluoroelastomer phase transformations. The number of image sequences per video ranges from a hundred to a thousand image sequences. The resulting image processing pipeline aims to automatically classify and analyze images to enable batch processing. Using this pipeline, the growth of each individual fluoroelastomer crystallite can be tracked through time. We incorporated statistical analysis into the pipeline to investigate trends in phase transformations between different fluoroelastomer batches. Understanding these phase transformations is crucial, as it can provide valuable insights into manufacturing processes, improve product quality, and possibly lead to the development of more advanced fluoroelastomer formulations.
36 MATERIALS SCIENCE↗
Stochastic joint inversion of hydrogeophysical data for salt tracer test monitoring and hydraulic conductivity imaging
The assessment of hydraulic conductivity of heterogeneous aquifers is a difficult task using traditional hydrogeological methods (e.g., steady state or transient pumping tests) due to their low spatial resolution. Geophysical measurements performed at the ground surface and in boreholes provide additional information for increasing the resolution and accuracy of the inverted hydraulic conductivity field. We used a stochastic joint inversion of Direct Current (DC) resistivity and Self-Potential (SP) data plus in situ measurement of the salinity in a downstream well during a synthetic salt tracer experiment to reconstruct the hydraulic conductivity field between two wells. The pilot point parameterization was used to avoid over-parameterization of the inverse problem. Bounds on the model parameters were used to promote a consistent Markov chain Monte Carlo sampling of the model parameters. To evaluate the effectiveness of the joint inversion process, we compared 8 cases in which the geophysical data are coupled or not to the in situ sampling of the salinity to map the hydraulic conductivity. We first tested the effectiveness of the inversion of each type of data alone (concentration sampling, self-potential, and DC resistivity), and then we combined the data two by two. We finally combined all the data together to show the value of each type of geophysical data in the joint inversion process because of their different sensitivity map. We also investigated a case in which the data were contaminated with noise and the variogram unknown and inverted stochastically. The results of the inversion revealed that incorporating the self-potential data improves the estimate of hydraulic conductivity field especially when the self-potential data were combined to the salt concentration measurement in the second well or to the time-lapse cross-well electrical resistivity data. Various tests were also performed to quantify the uncertainty in the inverted hydraulic conductivity field.
54 ENVIRONMENTAL SCIENCES↗
Pore-scale supercritical CO2 dissolution and mass transfer under imbibition conditions
Not Available
Chang, Chun↗