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At least 307 records · Page 17

Global-Address Networking (GASNet-1) Library

GASNet is a language-independent, networking middleware layer that provides network-independent, high-performance communication primitives including Remote Memory Access (RMA) and Active Messages (AM). It has been used to implement parallel programming models and libraries such as UPC, Co-Array Fortran, Titanium, Legion, Chapel, and many others. The interface is primarily intended as a compilation target and for use by runtime library writers (as opposed to end users), and the primary goals are high performance, interface portability, and expressiveness. GASNet stands for "Global-Address Space Networking".

SciDAC↗

Sealable femtoliter chamber arrays for cell-free biology

Cell-free systems provide a flexible platform for probing specific networks of biological reactions isolated from the complex resource sharing (e.g. global gene expression, cell division) encountered within living cells. However, such systems, used in conventional macro-scale bulk reactors, often fail to exhibit the dynamic behaviors and efficiencies characteristic of their living micro-scale counterparts. Understanding the impact of internal cell structure and scale on reaction dynamics is crucial to understanding complex gene networks. Here we report a microfabricated device that confines cell-free reactions in cellular scale volumes while allowing flexible characterization of the enclosed molecular system. This multilayered poly(dimethylsiloxane) (PDMS) device contains femtoliter-scale reaction chambers on an elastomeric membrane which can be actuated (open and closed). When actuated, the chambers confine Cell-Free Protein Synthesis (CFPS) reactions expressing a fluorescent protein, allowing for the visualization of the reaction kinetics over time using time-lapse fluorescent microscopy. Lastly, we demonstrate how this device may be used to measure the noise structure of CFPS reactions in a manner that is directly analogous to those used to characterize cellular systems, thereby enabling the use of noise biology techniques to characterize CFPS gene circuits and their interactions with the cell-free environment.

59 BASIC BIOLOGICAL SCIENCES↗

Mosquito-Borne Viruses and Insect-Specific Viruses Revealed in Field-Collected Mosquitoes by a Monitoring Tool Adapted from a Microbial Detection Array

Several mosquito-borne diseases affecting humans are emerging or reemerging in the United States. The early detection of pathogens in mosquito populations is essential to prevent and control the spread of these diseases. Here, we tested the potential applicability of the Lawrence Livermore Microbial Detection Array (LLMDA) to enhance biosurveillance by detecting microbes present in Aedes aegypti, Aedes albopictus, and Culex mosquitoes, which are major vector species globally, including in Texas. The sensitivity and reproducibility of the LLMDA were tested in mosquito samples spiked with different concentrations of dengue virus (DENV), revealing a detection limit of >100 but <1,000 PFU/ml. Additionally, field-collected mosquitoes from Chicago, IL, and College Station, TX, of known infection status (West Nile virus [WNV] and Culex flavivirus [CxFLAV] positive) were tested on the LLMDA to confirm its efficiency. Mosquito field samples of unknown infection status, collected in San Antonio, TX, and the Lower Rio Grande Valley (LRGV), TX, were run on the LLMDA and further confirmed by PCR or quantitative PCR (qPCR). The analysis of the field samples with the LLMDA revealed the presence of cell-fusing agent virus (CFAV) in A. aegypti populations. Wolbachia was also detected in several of the field samples (A. albopictus and Culex spp.) by the LLMDA. Our findings demonstrated that the LLMDA can be used to detect multiple arboviruses of public health importance, including viruses that belong to the Flavivirus, Alphavirus, and Orthobunyavirus genera. Additionally, insect-specific viruses and bacteria were also detected in field-collected mosquitoes. Another strength of this array is its ability to detect multiple viruses in the same mosquito pool, allowing for the detection of cocirculating pathogens in an area and the identification of potential ecological associations between different viruses. Finally, this array can aid in the biosurveillance of mosquito-borne viruses circulating in specific geographical areas.

59 BASIC BIOLOGICAL SCIENCES↗

Modeling Methods for 3D Lightning Mapping from Space

Global lightning detection has advanced greatly over the past few decades both on ground and from orbit. Ground-based systems like the Lightning Mapping Array (LMA) excel at high-precision 3D reconstruction of local flashes, while spaceborne lightning sensors have much larger potential coverage but are limited by coarser resolution and often rely on data from other instruments to determine 3D flash locations. CubeSpark is a new mission concept focused on combining these two methods in the form of six small satellites in low-Earth orbit. CubeSpark will combine RF and bispectral optical measurements of lightning in order to map the 3D structure of both individual flashes and their parent thunderstorms at 1-2 km spatial resolution on a global scale, enabling a host of new atmospheric, climate, and space electricity studies. The goal of this study is to assess the feasibility and expected resolution of lightning mapping via indivudal VHF sources using different methods and detector combinations. Flashes were simulated beneath orbital configurations consisting of 1-6 satellites, taking into account the complicated interactions with Earth's ionosphere. In the multi-satellite (>5) approach, RF detectors on each satellite measure the arrival times of impulsive VHF sources to collectively pinpoint their locations in 3D and reconstruct flashes with higher resolution than has been achieved from space. The same can process can be performed with 3-4 satellites by constraining sources' horizontal locations with onboard optical imagers. A 1-2 station approach follows the established method of determining the height of an RF source using the arrival time difference between direct RF waves and their reflections off the Earth's surface. Here we present preliminary results of the expected accuracy of these methods to inform potential satellite missions like CubeSpark.

Lightning↗

A multidimensional stability framework enhances interpretation and comparison of carbon cycling response to disturbance

Abstract The concept of stability is central to the study and sustainability of vital ecosystem goods and services as disturbances increase globally. While ecosystem ecologists, including carbon (C) cycling scientists, have long‐considered multiple dimensions of disturbance response, our discipline lacks an agreed‐upon analytical framework for characterizing multidimensional stability. Here, we advocate for the broader adoption of a standardized and normalized multidimensional stability framework for analyzing disturbance response. This framework includes four dimensions of stability: the degree of initial change in C fluxes (i.e., resistance ); rate (i.e., resilience ) and variability (i.e., temporal stability ) of return to pre‐disturbance C fluxes; and the extent of return to pre‐disturbance C fluxes (i.e., recovery ). Using this framework, we highlight findings not readily seen from analysis of absolute fluxes, including trade‐offs between initial and long‐term C flux responses to disturbance; different overall stability profiles among fluxes; and, using a pilot dataset, similar relative stability of net primary production following fire and insect disturbances. We conclude that ecosystem ecologists’ embrace of a unifying multidimensional stability framework as a complement to approaches focused on absolute C fluxes could advance global change research by aiding in the novel interpretation, comprehensive synthesis, and improved forecasting of ecosystems’ response to an increasing array of disturbances.

54 ENVIRONMENTAL SCIENCES↗

Neutron activation diagnostics at the National Ignition Facility (invited)

Neutron yields are measured at the National Ignition Facility (NIF) by an extensive suite of neutron activation diagnostics. Neutrons interact with materials whose reaction cross sections threshold just below the fusion neutron production energy, providing an accurate measure of primary unscattered neutrons without contribution from lower-energy scattered neutrons. Indium samples are mounted on diagnostic instrument manipulators in the NIF target chamber, 25-50 cm from the source, to measure 2.45 MeV deuterium-deuterium fusion neutrons through the {sup 115}In(n,n'){sup 115m} In reaction. Outside the chamber, zirconium and copper are used to measure 14 MeV deuterium-tritium fusion neutrons via {sup 90}Zr(n,2n), {sup 63}Cu(n,2n), and {sup 65}Cu(n,2n) reactions. An array of 16 zirconium samples are located on port covers around the chamber to measure relative yield anisotropies, providing a global map of fuel areal density variation. Neutron yields are routinely measured with activation to an accuracy of 7% and are in excellent agreement both with each other and with neutron time-of-flight and magnetic recoil spectrometer measurements. Relative areal density anisotropies can be measured to a precision of less than 3%. These measurements reveal apparent bulk fuel velocities as high as 200 km/s in addition to large areal density variations between the pole and equator of the compressed fuel.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

SU-E-T-461: Validation of Planning Algorithms in Dynamic Conformal Arc in IPlan Using ArcCHECK and 3DVH

Purpose: To study the effect of limited angular resolution of pencil beam calculation (PBC) on dynamic conformal arc plan (DCAP) in iPlan (BrainLab) using the ArcCHECK sytem and 3DVH software (Sun Nuclear Corporation). Methods: Four DCAPs were generated in iPlan RT Dose 4.5 treatment planning system on the ArcCHECK cylindrical phantom with central planning target volume (PTV). A cylindrical shell structure (SHELL) 2.85cm from phantom surface and 1.5 mm thickness was created to simulate the ArcCHECK diode array. Planned doses were calculated using both Monte Carlo calculation (MCC) and PBC algorithms, and exported to 3DVH software for global and target based comparisons using the 3Dgamma index. Four additional DCAPs were created and calculated on patient CT images and mapped onto the ArcCHECK phantom for measurement using a Varian TrueBeam STx. The measurements were compared against both MC and PB calculation using gamma index analysis. Results: For the ArcCHECK phantom, the dose distribution agreement quantified with 3D-gamma index is better (average-gamma (<γ>)=99.9%vs.79.1% and 96.8%vs45.7%, p=0.0294, 0.0286 for gamma (2mm,2%) and (1mm,1%) criteria respectively using Mann-Whitney U test) in the PTV than in the SHELL. The measurements show better agreement with MCC than the PB (<γ>=100%vs.86.7%, 99.6%vs.72.3%, 85.5%vs.50.8%, p=0.021, 0.026, 0.029 for gamma (3mm,3%), (2mm,2%) and (1mm,1%) criteria using Mann-Whitney U test respectively). The effect due to limited (10 degree) angular resolution of the PBC was observed, and it can be one of the possible reasons for poor agreement between measurement and PB calculation. Conclusion: The PBC of iPlan shows poor peripheral dose calculation accuracy for dynamic conformal arc plans due to limited angular resolution, but it performs well in the area close to target volume without considering heterogeneity. Since the user cannot change the 10 degree angular resolution of PBC, MCC is more appropriate for dynamic conformal arc plans.

60 APPLIED LIFE SCIENCES↗

A Simple Lagrangian Parcel Model for the Initiation of Summer-time Mesoscale Convective Systems over the Central United States

Mesoscale convective systems (MCSs) account for more than 50% of summertime precipitation over the central United States and have a significant impact on local weather and hydrologic cycle. It is hypothesized that the inadequate treatment of MCSs is responsible for the long-standing warm and dry bias over the central United States in coarse-resolution general circulation model (GCM) simulations. In particular, a better understanding of MCS initiation is still lacking. Here a single-column Lagrangian parcel model is first developed to simulate the basic features of a rising parcel. This simple model demonstrates the collective effects of boundary layer moistening and dynamical lifting in triggering convective initiation and reproduces successfully its early afternoon peak with surface equivalent potential temperature as a controlling factor. It also predicts that convection is harder to trigger in the future climate under global warming, consistent with the results from convection-permitting regional climate simulations. Then, a multicolumn model that includes an array of single-column models aligned in the east–west direction and incorporates idealized cold pool interaction mechanisms is developed. The multicolumn model captures readily the cold pool–induced upscale growth feature in MCS genesis from initially scattered convection that is organized into a mesoscale cluster in a few hours. It also highlights the crucial role of lifting effects due to cold pool collision and spreading, subsidence effect, and gust front propagation speed in controlling the final size of mesoscale clusters and cold pool regions. This simple model should be useful for understanding fundamental mechanisms of MCS initiation and providing guidance for improving MCS simulations in GCMs.

54 ENVIRONMENTAL SCIENCES↗

Extremely Accurate On-Orbit Position Accuracy using TDRSS

NASA is planning to launch a new service for Earth satellites providing them with precise GPS differential corrections and other ancillary information enabling decimeter level orbit determination accuracy and nanosecond time-transfer accuracy, onboard, in real-time. The TDRSS Augmentation Service for Satellites (TASS) will broadcast its message on the S-band multiple access forward channel of NASA s Tracking and Data Relay Satellite System (TDRSS). The satellite's phase array antenna has been configured to provide a wide beam, extending coverage up to 1000 km altitude over the poles. Global coverage will be ensured with broadcast from three or more TDRSS satellites. The GPS differential corrections are provided by the NASA Global Differential GPS (GDGPS) System, developed and operated by JPL. The GDGPS System employs global ground network of more than 70 GPS receivers to monitor the GPS constellation in real time. The system provides real-time estimates of the GPS satellite states, as well as many other real-time products such as differential corrections, global ionospheric maps, and integrity monitoring. The unique multiply redundant architecture of the GDGPS System ensures very high reliability, with 99.999% demonstrated since the inception of the system in early 2000. The estimated real time GPS orbit and clock states provided by the GDGPS system are accurate to better than 20 cm 3D RMS, and have been demonstrated to support sub-decimeter real time positioning and orbit determination for a variety of terrestrial, airborne, and spaceborne applications. In addition to the GPS differential corrections, TASS will provide real-time Earth orientation and solar flux information that enable precise onboard knowledge of the Earth-fixed position of the spacecraft, and precise orbit prediction and planning capabilities. TASS will also provide 5 seconds alarms for GPS integrity failures based on the unique GPS integrity monitoring service of the GDGPS System.

Stocklin, Frank↗

Modeling Methods for 3D Lightning Mapping from Space

Global lightning detection has advanced greatly over the past few decades both on ground and from orbit. Ground-based systems like the Lightning Mapping Array (LMA) excel at high-precision 3D reconstruction of local flashes, while spaceborne lightning sensors have much larger potential coverage but have been limited by coarser resolution and often rely on data from other instruments to determine flash location. The primary focus of this study is to examine the level of flash detail that can be expected from one or more low-Earth orbiting small satellites that combine VHF and optical measurements of lightning, which is a new mission concept called CubeSpark. The goal of CubeSpark is to map the 3D charge structure of thunderstorms at 1-2 km spatial resolution on a global scale, enabling a host of new atmospheric and space electricity studies. In order to maximize the potential data quality and minimize potential cost, flashes were simulated beneath single- and multi-satellite configurations. In the multi-satellite approach, RF detectors on each of the six satellites would measure the arrival times of impulsive VHF sources to collectively pinpoint their locations in 3D and reconstruct flashes with higher resolution than has been achieved from space. A single-station approach for 3D observation of lightning would follow the method of determining altitudes of strong VHF sources that produce trans-ionospheric pulse pairs (TIPPs) while relying on an on-board high-resolution optical day/night lightning mapper for approximate horizontal flash locations. Here we present preliminary results comparing the expected data fidelity and accuracy between these methods to inform potential satellite missions like CubeSpark.

lightning↗

Simulation of stratospheric N2O in the NCAR CCM2: Comparison with CLAES data and global budget analyses

Global variability and budgets of stratospheric nitrous oxide (N2O) are studied using output from a stratospheric version of the National Center for Atmospheric Research Climate Model (CCM2). The model extends over 0-80 km, incorporating an N2O-like tracer with tropospheric source and upper-stratospheric photochemical sink, the latter parameterized using linear damping rates obtained from detailed two-dimensional model calculations. Results from the model over several seasonal cycles are compared with observations of N2O from the Cryogenic Limb Array Etalon Spectrometer (CLAES) instrument on the Upper Atmosphere Research Satellite (UARS). The model produces N2O structure and variability that is in reasonable agreement with the observations. Global budgets of stratospheric N2O are furthermore analyzed using model output, based on the transformed Eulerian-mean, zonal-mean framework. These budgets are used to quantify the importance of planetary wave constituent transport in the stratosphere, for both slow seasonal variations and fast planetary wave events. These results demonstrate that such wave fluxes act to form and sharpen the strong subtropical N2O gradients observed in satellite measurements.

Randel, William J.↗

A Global Model for Estimating Atmospheric Phase Scintillation Statistics

Since 2007, the National Aeronautics and Space Administration (NASA) has been collecting atmospheric phase turbulence data from various NASA ground stations throughout the world. The goal of these measurement campaigns has been to generate statistics to characterize the local site turbulence conditions and their impact on widely distributed ground based antenna arrays. This is of critical importance for the situation of uplink arraying, in which a priori knowledge of the fast varying turbulent conditions of water vapor in the troposphere may not be known, and will impact the power combining efficiency of ground based transmitting arrays. Therefore, the design of these type of systems will be dependent on the local climatology of the particular ground station site. Based on the 30+ station years of data collected characterizing atmospheric phase scintillation statistics at various sites, a global model is presented which attempts to predict the average phase statistics of a generic site based on local surface weather data, such as surface pressure, temperature, relative humidity, wind speed, and median wind direction. A model is proposed and based on a standard log power distribution similar to amplitude scintillation models trained on the existing data sets and shows reasonable accuracy against existing data sets.

propagation↗

Lu-Hf and Sm-Nd geochronological constraints on the influence of subduction metamorphism in controlling the Hf-Nd terrestrial array: Evidence from the world’s orogenic belts

To create a better understanding of the influence of subduction metamorphism on the Hf-Nd terrestrial array, this study examines all of the available Lu-Hf and Sm-Nd garnet isochron ages from the world’s orogenic eclogites and amphi bolites. The garnet isochron y-intercept values provide a record of each sample’s epsilon Hf ( ε Hf) and Nd ( ε Nd) at the age recorded by the isochron, which in the case of most orogenic eclogites and amphibolites is the time of prograde metamorphism during subduction. It is further possible to assess the extent to which each sample’s Lu-Hf and Sm-Nd isotope systematics have remained undisturbed since the date recorded by the isochron by comparison of the bulk-rock isotope systematics with the isochron initial value. This approach provides a means of understanding the Lu-Hf and Sm-Nd systematics of post-subduction metamorphic oceanic crust. On a global scale, the coupled Lu-Hf and Sm-Nd isotope systematics of this crust closely align with the Hf-Nd terrestrial array and have average 176 Lu/ 177 Hf and 147 Sm/ 144 Nd ratios within error of the chondritic uniform reservoir values. This is an important finding because it suggests that a reservoir of deeply subducted oceanic crust, possibly residing at the core-mantle boundary, is unlikely to be significantly fractionated from the Hf-Nd terrestrial array. In contrast to the samples of subduction-metamorphosed oceanic crust, metamorphic rocks with a continental crustal protolith demonstrate garnet isochron initial values and bulk-rock Lu-Hf and Sm-Nd isotope systematics indicating significant decoupling from the Hf-Nd terrestrial array. However, because this material is not readily subducted, this strongly decoupled signature is unlikely to be transferred into deep Earth. Mixing calculations aimed at developing a clearer understanding of what factors control decoupling of a sample’s Lu-Hf and Sm-Nd systematics from the Hf-Nd terrestrial array highlight the complexity of mass-transfer regimes operating in the subduction environment.

54 ENVIRONMENTAL SCIENCES↗

Animal displacement from marine energy development: Mechanisms and consequences

For marine wave and tidal energy to successfully contribute to global renewable energy goals and climate change mitigation, marine energy projects need to expand beyond small deployments to large-scale arrays. However, with large-scale projects come potential environmental effects not observed at the scales of single devices and small arrays. One of these effects is the risk of displacing marine animals from their preferred habitats or their migration routes, which may increase with the size of arrays and location. Many marine animals may be susceptible to some level of displacement once large marine energy arrays are increasingly integrated into the seascape, including large migratory animals, non-migratory pelagic animals with large home ranges, and benthic and demersal mobile organisms with more limited ranges, among many others. Yet, research around the mechanisms and effects of displacement have been hindered by the lack of clarity within the international marine energy community regarding the definition of displacement, how it occurs, its consequences, species of concern, and methods to investigate the outcomes. This review paper leveraged lessons learned from other industries, such as offshore development, to establish a definition of displacement in the marine energy context, explore which functional groups of marine animals may be affected and in what way, and identify pathways for investigating displacement through modeling and monitoring. In the marine energy context, we defined displacement as the outcome of one of three mechanisms (i.e., attraction, avoidance, and exclusion) triggered by an animal's response to one or more stressors acting as a disturbance, with various consequences at the individual through population levels. The knowledge gaps highlighted in this study will help the regulatory and scientific communities prepare for mitigating, observing, measuring, and characterizing displacement of various animals around marine energy arrays in order to prevent irreversible consequences.

16 TIDAL AND WAVE POWER↗

LANDSAT-D flight segment operations manual, volume 2

Functions, performance capabilities, modes of operation, constraints, redundancy, commands, and telemetry are described for the thematic mapper; the global positioning system; the direct access S-band; the multispectral scanner; the payload correction; the thermal control subsystem; the solar array retention, deployment, and jettison assembly; and the boom antenna retention, deployment, and jettison assembly for LANDSAT 4.

Varhola, J.↗

Cryogenic Limb Array Etalon Spectrometer (CLAES) - Instrument overview

The design and capabilities of CLAES are described. The CLAES is an instrument on NASA's Upper Atmosphere Research Satellite (UARS) and measures the global concentrations of stratospheric species and temperature over the altitude range 10-60 km. Consideration is given to the motorized limb acquisition and adjustment mirror, solid cryogen cooler, optical system, electronics subsystems, cryostat, and IR calibration source. Diagrams of the CLAES and UARS are provided.

Burriesci, Larry↗

Microwave sensing technology issues related to a global change technology architecture trade study

The objectives are to enable the development of lighter and less power consuming, high resolution microwave sensors which will operate at frequencies from 1 to 200 GHz. These systems will use large aperture antenna systems (both reflector and phased arrays) capable of wide scan angle, high polarization purity, and utilize sidelobe suppression techniques as required. Essentially, the success of this technology program will enable high resolution microwave radiometers from geostationary orbit, lightweight and more efficient radar systems from low Earth orbit, and eliminate mechanical scanning methods to the fullest extent possible; a main source of platform instability in large space systems. The Global Change Technology Initiative (GCTI) will develop technology which will enable the use of satellite systems for Earth observations on a global scale.

Campbell, Thomas G.↗

Nonlocal discrete continuity and invariant currents in locally symmetric effective Schrödinger arrays

We develop a formalism relating nonlocal current continuity to spatial symmetries of subparts in discrete Schrödinger systems. Breaking of such local symmetries hereby generates sources or sinks for the associated nonlocal currents. The framework is applied to locally inversion-(time-) and translation-(time-) symmetric one-dimensional photonic waveguide arrays with Hermitian or non-Hermitian effective tight-binding Hamiltonians. For stationary states the nonlocal currents become translationally invariant within symmetric domains, exposing different types of local symmetry. They are further employed to derive a mapping between wave amplitudes of symmetry-related sites, generalizing also the global Bloch and parity mapping to local symmetry in discrete systems. In scattering setups, perfectly transmitting states are characterized by aligned invariant currents in attached symmetry domains, whose vanishing signifies a correspondingly symmetric density. For periodically driven arrays, the invariance of the nonlocal currents is retained on period average for quasi-energy eigenstates. The proposed theory of symmetry-induced continuity and local invariants may contribute to the understanding of wave structure and response in systems with localized spatial order. - Highlights: • Nonlocal current continuity related to subsystem symmetries in discrete Schrödinger arrays. • Application to 1D (non-) Hermitian bound and scattering tight-binding setups. • Local inversion/translation symmetries described by invariant nonlocal currents. • Generalized parity/Bloch mapping between local-symmetry-related sites via currents. • Time-averaged invariant currents of Floquet states in periodically driven arrays.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗