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At least 307 records · Page 17

Digital Biosurveillance for Zoonotic Disease Detection in Kenya

Infectious disease surveillance is crucial for early detection and situational awareness of disease outbreaks. Digital biosurveillance monitors large volumes of open-source data to flag potential health threats. This study investigates the potential of digital surveillance in the detection of the top five priority zoonotic diseases in Kenya: Rift Valley fever (RVF), anthrax, rabies, brucellosis, and trypanosomiasis. Open-source disease events reported between August 2016 and October 2020 were collected and key event-specific information was extracted using a newly developed disease event taxonomy. A total of 424 disease reports encompassing 55 unique events belonging to anthrax (43.6%), RVF (34.6%), and rabies (21.8%) were identified. Most events were first reported by news media (78.2%) followed by international health organizations (16.4%). News media reported the events 4.1 (±4.7) days faster than the official reports. There was a positive association between official reporting and RVF events (odds ratio (OR) 195.5, 95% confidence interval (CI); 24.01–4756.43, p < 0.001) and a negative association between official reporting and local media coverage of events (OR 0.03, 95% CI; 0.00–0.17, p = 0.030). This study highlights the usefulness of local news in the detection of potentially neglected zoonotic disease events and the importance of digital biosurveillance in resource-limited settings.

59 BASIC BIOLOGICAL SCIENCES↗

Near Infrared Emitting Semiconductor Polymer Dots for Bioimaging and Sensing

Semiconducting polymer dots (Pdots) are rapidly becoming one of the most studied nanoparticles in fluorescence bioimaging and sensing. Their small size, high brightness, and resistance to photobleaching make them one of the most attractive fluorophores for fluorescence imaging and sensing applications. This paper highlights our recent advances in fluorescence bioimaging and sensing with nanoscale luminescent Pdots, specifically the use of organic dyes as dopant molecules to modify the optical properties of Pdots to enable deep red and near infrared fluorescence bioimaging applications and to impart sensitivity of dye doped Pdots towards selected analytes. Building on our earlier work, we report the formation of secondary antibody-conjugated Pdots and provide Cryo-TEM evidence for their formation. We demonstrate the selective targeting of the antibody-conjugated Pdots to FLAG-tagged FLS2 membrane receptors in genetically engineered plant leaf cells. We also report the formation of a new class of luminescent Pdots with emission wavelengths of around 1000 nm. Finally, we demonstrate the formation and utility of oxygen sensing Pdots in aqueous media.

47 OTHER INSTRUMENTATION↗

Integrating Light Curve and Atmospheric Modeling of Transiting Exoplanets

Spectral retrieval techniques are currently our best tool to interpret the observed exoplanet atmospheric data. Said techniques retrieve the optimal atmospheric components and parameters by identifying the best fit to an observed transmission/emission spectrum. Over the past decade, our understanding of remote worlds in our galaxy has flourished thanks to the use of increasingly sophisticated spectral retrieval techniques and the collective effort of the community working on exoplanet atmospheric models. A new generation of instruments in space and from the ground is expected to deliver higher quality data in the next decade; it is therefore paramount to upgrade current models and improve their reliability, their completeness, and the numerical speed with which they can be run. In this paper, we address the issue of reliability of the results provided by retrieval models in the presence of systematics of unknown origin. More specifically, we demonstrate that if we fit directly individual light curves at different wavelengths (L-retrieval), instead of fitting transit or eclipse depths, as it is currently done (S-retrieval), the said methodology is more sensitive against astrophysical and instrumental noise. This new approach is tested, in particular, when discrepant simulated observations from Hubble Space Telescope/Wide Field Camera 3 and Spitzer/IRAC are combined. We find that while S-retrievals converge to an incorrect solution without any warning, L-retrievals are able to flag potential discrepancies between the data sets.

79 ASTRONOMY AND ASTROPHYSICS↗

Searching for Novel Chemistry in Exoplanetary Atmospheres Using Machine Learning for Anomaly Detection

Abstract The next generation of telescopes will yield a substantial increase in the availability of high-quality spectroscopic data for thousands of exoplanets. The sheer volume of data and number of planets to be analyzed greatly motivate the development of new, fast, and efficient methods for flagging interesting planets for reobservation and detailed analysis. We advocate the application of machine learning (ML) techniques for anomaly (novelty) detection to exoplanet transit spectra, with the goal of identifying planets with unusual chemical composition and even searching for unknown biosignatures. We successfully demonstrate the feasibility of two popular anomaly detection methods (local outlier factor and one-class support vector machine) on a large public database of synthetic spectra. We consider several test cases, each with different levels of instrumental noise. In each case, we use receiver operating characteristic curves to quantify and compare the performance of the two ML techniques.

Astronomy & Astrophysics↗

Testing the LSST Difference Image Analysis Pipeline Using Synthetic Source Injection Analysis

Abstract We evaluate the performance of the Legacy Survey of Space and Time Science Pipelines Difference Image Analysis (DIA) on simulated images. By adding synthetic sources to galaxies on images, we trace the recovery of injected synthetic sources to evaluate the pipeline on images from the Dark Energy Science Collaboration Data Challenge 2. The pipeline performs well, with efficiency and flux accuracy consistent with the signal-to-noise ratio of the input images. We explore different spatial degrees of freedom for the Alard–Lupton polynomial-Gaussian image subtraction kernel and analyze for trade-offs in efficiency versus artifact rate. Increasing the kernel spatial degrees of freedom reduces the artifact rate without loss of efficiency. The flux measurements with different kernel spatial degrees of freedom are consistent. We also here provide a set of DIA flags that substantially filter out artifacts from the DIA source table. We explore the morphology and possible origins of the observed remaining subtraction artifacts and suggest that given the complexity of these artifact origins, a convolution kernel with a set of flexible bases with spatial variation may be needed to yield further improvements.

Liu, S. (ORCID:0000000244612143)↗

BACCHUS Analysis of Weak Lines in APOGEE Spectra (BAWLAS)

Elements with weak and blended spectral features in stellar spectra are challenging to measure and require specialized analysis methods to precisely measure their chemical abundances. In this work, we have created a catalog of approximately 120,000 giants with high signal-to-noise Apache Point Observatory Galactic Evolution Experiment (APOGEE) Data Release 17 (DR17) spectra, for which we explore weak and blended species to measure Na, P, S, V, Cu, Ce, and Nd abundances and 12 C/ 13 C isotopic ratios. We employ an updated version of the Brussels Automatic Code for Characterizing High-accuracy Spectra (BACCHUS) code to derive these abundances using the stellar parameters measured by APOGEE's DR17 Stellar Parameters and Chemical Abundances Pipeline, quality flagging to identify suspect spectral lines, and a prescription for upper limits. Combined, these allow us to provide our BACCHUS Analysis of Weak Lines in APOGEE Spectra catalog of precise chemical abundances for these weak and blended species, which agrees well with the literature and improves upon APOGEE abundances for these elements, some of which are unable to be measured with APOGEE's current, grid-based approach without computationally expensive expansions. This new catalog can be used alongside APOGEE and provides measurements for many scientific applications ranging from nuclear physics to Galactic chemical evolution and Milky Way population studies. To illustrate this we show some examples of uses for this catalog, such as showing that we observe stars with enhanced s-process abundances or that we can use the 12 C/ 13 C ratios to explore extra mixing along the red giant branch.

79 ASTRONOMY AND ASTROPHYSICS↗

Differences in fine particle chemical composition on clear and cloudy days

Clouds are prevalent and alter fine particulate matter (PM 2.5 ) mass and chemical composition. Cloud-affected satellite retrievals are subject to higher uncertainty and are often removed from data products, hindering quantitative estimates of tropospheric chemical composition during cloudy times. We examine surface PM 2.5 chemical constituent concentrations in the Interagency Monitoring of PROtected Visual Environments (IMPROVE) network in the United States during cloudy and clear-sky times defined using Moderate Resolution Imaging Spectroradiometer (MODIS) cloud flags from 2010 to 2014 with a focus on differences in particle species that affect hygroscopicity and aerosol liquid water (ALW). Cloudy and clear-sky periods exhibit significant differences in PM 2.5 mass and chemical composition that vary regionally and seasonally. In the eastern US, relative humidity alone cannot explain differences in ALW, suggesting that emissions and in situ chemistry related to anthropogenic sources exert determining impacts. An implicit clear-sky bias may hinder efforts to quantitatively understand and improve representation of aerosol–cloud interactions, which remain dominant uncertainties in models.

54 ENVIRONMENTAL SCIENCES↗

Estimating total attenuation using Rayleigh targets at cloud top: applications in multilayer and mixed-phase clouds observed by ground-based multifrequency radars

At millimeter wavelengths, attenuation by hydrometeors, such as liquid droplets or large snowflakes, is generally not negligible. When using multifrequency ground-based radar measurements, it is common practice to use the Rayleigh targets at cloud top as a reference in order to derive attenuation-corrected reflectivities and meaningful dual-frequency ratios (DFRs). By capitalizing on this idea, this study describes a new quality-controlled approach that aims at identifying regions of cloud where particle growth is negligible. The core of the method is the identification of a “Rayleigh plateau”, i.e., a large enough region near cloud top where the vertical gradient of DFR remains small. By analyzing co-located Ka–W band radar and microwave radiometer (MWR) observations taken at two European sites under various meteorological conditions, it is shown how the resulting estimates of differential path-integrated attenuation (ΔPIA) can be used to characterize hydrometeor properties. When the ΔPIA is predominantly produced by cloud liquid droplets, this technique alone can provide accurate estimates of the liquid water path. When combined with MWR observations, this methodology paves the way towards profiling the cloud liquid water, quality-flagging the MWR retrieval for rain and drizzle contamination, and/or estimating the snow differential attenuation.

54 ENVIRONMENTAL SCIENCES↗

Algorithmically detected rain-on-snow flood events in different climate datasets: a case study of the Susquehanna River basin

Abstract. Rain-on-snow (RoS) events in regions of ephemeral snowpack – such as the northeastern United States – can be key drivers of cool-season flooding. We describe an automated algorithm for detecting basin-scale RoS events in gridded climate data by generating an area-averaged time series and then searching for periods of concurrent precipitation, surface runoff, and snowmelt exceeding predefined thresholds. When evaluated using historical data over the Susquehanna River basin (SRB), the technique credibly finds RoS events in published literature and flags events that are followed by anomalously high streamflow as measured by gauge data along the river. When comparing four different datasets representing the same 21-year period, we find large differences in RoS event magnitude and frequency, primarily driven by differences in estimated surface runoff and snowmelt. Using dataset-specific thresholds improves agreement between datasets but does not account for all discrepancies. We show that factors such as meteorological forcing and coupling frequency, as well as choice of land surface model, play roles in how data products capture these compound extremes and suggest care is to be taken when climate datasets are used by stakeholders for operational decision-making.

54 ENVIRONMENTAL SCIENCES↗

Offshore wind energy forecasting sensitivity to sea surface temperature input in the Mid-Atlantic

Abstract. As offshore wind farm development expands, accurate wind resource forecasting over the ocean is needed. One important yet relatively unexplored aspect of offshore wind resource assessment is the role of sea surface temperature (SST). Models are generally forced with reanalysis data sets, which employ daily SST products. Compared with observations, significant variations in SSTs that occur on finer timescales are often not captured. Consequently, shorter-lived events such as sea breezes and low-level jets (among others), which are influenced by SSTs, may not be correctly represented in model results. The use of hourly SST products may improve the forecasting of these events. In this study, we examine the sensitivity of model output from the Weather Research and Forecasting model (WRF) 4.2.1 to different SST products. We first evaluate three different data sets: the Multiscale Ultrahigh Resolution (MUR25) SST analysis, a daily, 0.25∘ × 0.25∘ resolution product; the Operational Sea Surface Temperature and Ice Analysis (OSTIA), a daily, 0.054∘ × 0.054∘ resolution product; and SSTs from the Geostationary Operational Environmental Satellite 16 (GOES-16), an hourly, 0.02∘ × 0.02∘ resolution product. GOES-16 is not processed at the same level as OSTIA and MUR25; therefore, the product requires gap-filling using an interpolation method to create a complete map with no missing data points. OSTIA and GOES-16 SSTs validate markedly better against buoy observations than MUR25, so these two products are selected for use with model simulations, while MUR25 is at this point removed from consideration. We run the model for June and July of 2020 and find that for this time period, in the Mid-Atlantic, although OSTIA SSTs overall validate better against in situ observations taken via a buoy array in the area, the two products result in comparable hub-height (140 m) wind characterization performance on monthly timescales. Additionally, during hours-long flagged events (< 30 h each) that show statistically significant wind speed deviations between the two simulations, both simulations once again demonstrate similar validation performance (differences in bias, earth mover's distance, correlation, and root mean square error on the order of 10−1 or less), with GOES-16 winds validating nominally better than OSTIA winds. With a more refined GOES-16 product, which has been not only gap-filled but also assimilated with in situ SST measurements in the region, it is likely that hub-height winds characterized by GOES-16-informed simulations would definitively validate better than those informed by OSTIA SSTs.

17 WIND ENERGY↗

Particle number size distributions (10-461 nm) measured by SMPS at the ENA site during the AGENA campaign

During the Aerosol Growth in the Eastern North Atlantic (AGENA) campaign at the ENA site, particle number size distributions ranging from 10.6 to 461 nm were measured using SMPS with a time resolution of 4 minutes. The local pollution was identified and flagged by the “pollutionflag” field, where 0 denotes the clean periods and 1 denotes the polluted periods.

54 ENVIRONMENTAL SCIENCES↗

Planetary Boundary Layer Height (PBLH) over SGP from 1998 to 2023

PBLH is a critical parameter influencing weather phenomena, air quality, and various meteorological processes. However, accurately retrieving PBLH has been a challenging task due to limitations such as coarse temporal resolution and measurement drift in traditional radiosonde observations. To address these limitations, we have devised a lidar-based methodology that capitalizes on a newly developed algorithm for PBLH retrieval. This algorithm demonstrates enhanced capabilities in capturing diurnal fluctuations in PBLH compared to existing lidar-based methods (Su et al. 2020). In addition, we have refined this algorithm specifically for PBLH retrieval under cloudy conditions through a novel scheme (Su et al. 2022). To ensure data reliability, a quality-control process has been implemented to filter out questionable data points. Accompanying the data set is a quality-control flag for ease of reference. It should be noted that we have assimilated all available radiosonde observations to provide a more robust estimate of PBLH, making the data set valuable for a variety of related studies.

54 ENVIRONMENTAL SCIENCES↗

SAIL-Net Raw and Post Corrected POPS Data Fall 2021 - Summer 2023

SAIL-Net is a DOE funded project in the East River Watershed near Crested Butte, Colorado with the goal of advancing our understanding of aerosol-cloud interactions in complex, mountainous regions. Through the deployment of a network of six low cost microphysics nodes in Fall 2021 in the same domain at the SAIL campaign, SAIL-Net provides data on aerosol size distributions, cloud condensation nuclei (CCN), and ice nucleation particles (INP). This network enables the investigation of small-scale variations in complex terrain. Two datasets are provided - one containing raw data and the other containing post-corrected data. The raw dataset provides the raw data recorded from the POPS which were deployed at each of the six sites. These data are organized by site and broken down into daily data files. The six site names used here are: “gothic”, “irwin”, “cbtop”, “cbmid”, “pumphouse”, and “snodgrass”. These data are not cleaned or post-corrected, but some flags have been added. The data are reported at 1 second time resolution. The post-corrected dataset provides the post-corrected and cleaned data recorded from the POPS which were deployed at each of the six sites. This data are also organized by site (same as those found in the raw data) and broken down into daily data files. Unlike the raw POPS data, these data have already been cleaned to remove what we believe are bad values. These data should be ready to use with no cleaning. For a full description of the cleaning and post-correction process, see the readme.

54 ENVIRONMENTAL SCIENCES↗

ARM Aerial Facility (AAF) - Unmanned Aircraft Systems, Cloud Droplet Probe with QC and lat/lon/alt

The Cloud Droplet Probe (CDP) is designed to measure cloud droplet size distribution from 2 µm to 50 µm. The CDP and an appropriate data system can also calculate various other parameters including particle concentrations, effective diameter (ED), Median Volume Diameter (MVD), and Liquid Water Content (LWC). The b1 level adds standard quality control flags, and merges in flight navigation data.

54 ENVIRONMENTAL SCIENCES↗

NPFTURBULENCE: Fast Response Temperature by Airborne Measurements

The original data were collected during the field campaign of the “Turbulent layers promoting New Particle Formation” experiment (NPFTURBULENCE; https://www.arm.gov/research/campaigns/aaf2024npfturbulence; https://www.arm.gov/publications/programdocs/doe-sc-arm-25-004.pdf ) over the Atmospheric Radiation Measurement (ARM) Southern Great Plains (SGP) Atmospheric Observatory (https://www.arm.gov/capabilities/observatories/sgp ) in north-central Oklahoma. The ARM Aerial Facility ArcticShark uncrewed aerial system (UAS, https://www.arm.gov/capabilities/observatories/aaf/uas) was based at Blackwell–Tonkawa Municipal Airport (IATA: BWL, ICAO: KBKN, FAA LID: BKN, 36.74475° N, 97.34918° W, 313.9 m MSL), for the field campaign from May 5 through May 29, 2024. The ArcticShark UAS performed 11 flights, including 10 research flights over the Central Facility of the ARM SGP to measure atmospheric state, turbulence, surface IR temperature and imagery, aerosol number concentration and size distribution. The current dataset presents fast response temperature in the atmospheric boundary layer and lower free troposphere measured on the airborne platform throughout the field campaign. The primary instruments used to create the current dataset were the fine wire thermocouple probe, Pitot-static system (part of the UAS control), and infrared gas analyzer sensor for H2O and CO2 (LI-840A). All parameters used in the temperature calculations (static and dynamic pressure, absolute humidity in form of dew point temperature) were included in the data set. For user convenience, one additional parameter was also included: the type of flight flag (level, up, down, turn, and combination of thereof).

Air temperature↗

Cleaned 5-Minute Resolution Air Quality and Meteorological Data from Nine TCEQ CAMS Sites in Houston, Texas (Nov 2021 – Oct 2022)

These data encompass 5-minute air monitoring and meteorological observations collected in the greater Houston, Texas metropolitan region, at nine (9) Continuous Ambient Monitoring Stations (CAMS) operated by the Texas Commission on Environmental Quality (TCEQ) between November 1, 2021 and October 31, 2022. The CAMS sites (CAMS 1, 8, 35, 45, 148, 403, 405, 410, and 1052) were chosen because their instrumentation includes measurements of PM2.5. These sites also provide continuous multi-parameter air-quality and meteorological measurements. Particulate matter (PM2.5, PM10) was sampled along with several trace gases, including ozone (O3), nitrogen oxides (NO, NO2, NOx), sulfur dioxide (SO2), and carbon monoxide (CO). The data set also contains standard surface meteorological parameters (temperature, humidity, pressure, wind speed, and wind direction). Several sites also include AutoGC-based measurements of volatile organic compounds (VOCs). Air monitoring instruments deployed at the selected sites comprise the following systems: BAM-1020 or TEOM (PM2.5), Thermo Scientific TEI 49i (O3), TEI 42i (NOx), and AutoGCs (VOCs). This data set is similar to the data included within the houairq5mX1.00 datastream, except for a few additional quality control steps. A systematic data cleaning and verification process was performed on the data set to ensure its quality and preparation for analysis. Removal of non-numeric status flags (e.g., [LIM], [QAS], [SPZ], [CAL], [PMA], [AQI], [SPN], [MAL]) was accomplished by employing rule-based string parsing to extract valid numerical values. Missing entries were set to -9999; however, invalid or anomalous values (e.g., 99999) were retained as originally reported by the TCEQ to preserve data provenance. The time sequence was verified for completeness, removal of duplicates, and uniformity at 5-minute intervals. Column labeling was standardized, and corresponding values were assessed for physical plausibility. All timestamps in the data set were reported in Coordinated Universal Time (UTC) as provided by the TCEQ. Further, the latitude and longitude coordinates were added for each CAMS site. A subset of the data (June 1–September 30, 2022) has been used in the following publication: Subba et al. 2025. “Implications of sea breeze circulations on boundary layer aerosols in the southern coastal Texas region.” EGUsphere 2025: 1–49, https://doi.org/10.5194/egusphere-2025-2659.

latitude↗