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All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

Maximizing Spaceflight Biological Data with Omics Analytics: The NASA GeneLab Database

NASA’s GeneLab includes an open-access repository of some 250+ omics datasets generated by biological experiments relevant to spaceflight including simulated cosmic radiation and microgravity. In order to maximize the intelligibility of these data, particularly for users with limited bioinformatics background, GeneLab has become a knowledgebase platform converting raw genetic and proteomic signatures found in flight samples into biological and physiological meanings. A large community of more than 100 scientists has rallied behind GeneLab and organized into four Analysis Working Groups (AWGs: Animal, Plant, Microbe, and Multi-Omics). Together, the AWGs have gained scientific recognition worldwide by establishing a consortium in charge of adopting new complex standards for data analysis workflows and omics sample processing in a rapidly evolving field. We will demonstrate the usage of the repository with smart search capability, an online controlled-access toolshed "Galaxy" to process user data with vetted standard workflows, a workspace for data sharing and a data submission portal with ontology control for better metadata curation. The GeneLab visualization portal will also be demonstrated, showing how anyone without formal training in bioinformatics can now browse the space biology omics data to discover new biology and potential solutions to improve life in space.

Sylvain Vincent Costes↗
NASA NTRSDate not supplied

Presenting Model-Based Systems Engineering Information to Non-Modelers

NASA’s Human Research Program’s (HRP) Exploration Medical Capability (ExMC) Element adopted Systems Engineering (SE) principles and Model Based Systems Engineering (MBSE) tools to capture the system functions, system architecture, requirements, interfaces, and clinical capabilities for a future exploration medical system. There are many different stakeholders who may use the information in the model: systems engineers, requirement engineers, clinicians (doctors, nurses, and pharmacists), scientists, and program managers. Many of these individuals do not have access to MBSE modeling toolsor have never used these tools. Many of these individuals (clinicians, scientists, even program managers)may have no experience with SE in general let alone interpreting a systems model. The challenge faced by ExMC was how to present the content in the model to non-modelers in a way they could understand with limited to no training in MBSE or the Systems Modeling Language (SysML) without using the modeling tool. Therefore, from the model, ExMC created an HTML report that is accessible to anyone with a browser. When creating the HTML report, the ExMC SE team talked to stakeholders and received their feedback on what content they wanted and how to display this content. Factoring in feedback, the report arranges the content in a way that not only directs readers through the SE process taken to derive the requirements, but also helps them to understand the fundamental steps in an SE approach. The report includes links to source information (i.e., NASA documentation that describes levels of care) and other SE deliverables (e.g., Concept of Operations). These links were provided to aid in the understanding of how the team created this content through a methodical SE approach. This paper outlines the process used to develop the model, the data chosen to share with stakeholders, many of the model elements used in the report, the review process stakeholders followed, the comments received from the stakeholders, and the lessons ExMC learned through producing this HTML report.

Jeff Cohen↗
NASA NTRSDate not supplied

Thermal Materials and Coatings for Near Rectilinear Halo Orbit (NRHO)

Passive thermal control of a spacecraft is reliant on external surface optical properties (solar absorptivity and IR emissivity), which degrade over time depending on length of mission, material or coating, and natural and induced environments. Understanding the degradation and resulting End of Life (EOL) optical properties enables optimization of the thermal performance and reduces risk. The environmental factors that affect degradation of materials and coatings include UV, solar wind, vacuum, contamination, lunar dust, atomic oxygen, and more. Future spacecraft such as Gateway will be flying in the Near Rectilinear Halo Orbit (NRHO), an environment that has not been flown before and environmental factors are different from Low Earth Orbit. There is no on orbit data for materials in this environment, and optical property data from on-orbit and ground experiments for other environments is of limited use. This 1.5 hour short course will explore optical properties and degradation by introducing the expected environment of NRHO, types of materials and coatings that could be used, how to estimate their EOL properties, and future work. This course will focus on the NRHO environment, but it will be beneficial for anyone interested in optical property degradation in the space environment.

Optics↗
NASA NTRSDate not supplied

Short Time Scale Stability Monitoring of GOES-16 Visible Channels by Utilizing Daily Inter-Calibration Events with both VIIRS and MODIS Sensors

The CERES project relies on MODIS, VIIRS and geostationary (GEO) imager retrieved cloud properties to compute surface fluxes and convert CERES and GEO radiances into TOA fluxes. The CERES TOA and surface fluxes need to be of climate quality and any anomaly or discontinuity in the calibration of the MODIS, VIIRS, GEO radiances need to be mitigated or avoided. Due to the nature of the CERES instrument calibration, there is a lag time of 3 months before the processing of the CERES product. This allows the CERES team to investigate any unforeseen problems in the input datasets or GEO calibration discontinuities or anomalies before processing. The CERES geostationary imager calibration team is developing a daily monitoring system of GEO, MODIS and VIIRS visible channel radiances in order to detect any day to day discontinuities as part of the CERES/GEO coincident ray-matching calibration efforts. a GEO discontinuity can be detected using two MODIS and 2 VIIRS sensors simultaneously, thus increasing the sampling greatly over a single GEO/LEO radiance pairs. This method is being automated and has already detected three erroneous radiometric calibration events, which were verified with the GOES-16 event log page. One advantage of daily monitoring is that the time period needed to verify calibration drifts is reduced and the confidence to detect even smaller magnitudes of the calibration drift is increased over monthly monitoring. By utilizing Terra and Aqua MODIS and NPP and NOAA20 VIIRS imagers to inter-calibrate GOES-16, the GOES-16 calibration can be referenced to anyone of these imagers. If the CERES project transitions between the Aqua-MODIS imager to the NOAA20 VIIRS imager, the NOAA-20 VIIRS imager can be radiometrically scale to Aqua-MODIS calibration, thus avoiding a GOES-16 calibration discontinuity.

David Robert Doelling↗
NASA NTRSDate not supplied

GeneLab: The NASA System Biology Platform for Space Omics Repository, Analysis and Visualization

NASA’s GeneLab includes an open-access repository of some 250+ omics datasets generated by biological experiments relevant to spaceflight including simulated cosmic radiation and microgravity. In order to maximize the intelligibility of these data, particularly for users with limited bioinformatics background, GeneLab has become a knowledgebase platform converting raw genetic and proteomic signatures found in flight samples into biological and physiological meanings. A large community of more than 100 scientists has rallied behind GeneLab and organized into four Analysis Working Groups (AWGs: Animal, Plant, Microbe, and Multi-Omics). Together, the AWGs have gained scientific recognition worldwide by establishing a consortium in charge of adopting new complex standards for data analysis workflows and omics sample processing in a rapidly evolving field. We will demonstrate the usage of the repository with smart search capability, an online controlled-access toolshed "Galaxy" to process user data with vetted standard workflows, a workspace for data sharing and a data submission portal with ontology control for better metadata curation. The GeneLab visualization portal will also be demonstrated, showing how anyone without formal training in bioinformatics can now browse the space biology omics data to discover new biology and potential solutions to improve life in space.

GeneLab↗
NASA NTRSDate not supplied

Presenting Model-Based Systems Engineering Information to Non-Modelers

NASA’s Human Research Program’s (HRP) Exploration Medical Capability (ExMC) Element adopted Systems Engineering (SE) principles and Model Based Systems Engineering (MBSE) tools to capture the system functions, system architecture, requirements, interfaces, and clinical capabilities for a future exploration medical system. There are many different stakeholders who may use the information in the model: systems engineers, clinicians (physicians, nurses, and pharmacists), scientists, and program managers. Many of these individuals do not have access to MBSE modeling tools or have never used these tools. Many of these individuals (clinicians, scientists, even program managers) may have no experience with SE in general let alone interpreting a systems model. The challenge faced by ExMC was how to present the content in the model to non-modelers in a way they could understand with limited to no training in MBSE or the Systems Modeling Language (SysML) without using the modeling tool. Therefore, from the model, ExMC created an HTML report that is accessible to anyone with a browser. When creating the HTML report, the ExMC SE team talked to stakeholders and received their feedback on what content they wanted and how to display this content. Factoring in feedback, the report arranges the content in a way that not only directs readers through the SE process taken to derive the requirements, but also helps them to understand the fundamental steps in an SE approach. The report includes links to source information (i.e., NASA documentation that describes levels of care) and other SE deliverables (e.g., Concept of Operations). These links were provided to aid in the understanding of how the team created this content through a methodical SE approach. This paper outlines the process used to develop the model, the data chosen to share with stakeholders, many of the model elements used in the report, the review process stakeholders followed, the comments received from the stakeholders, and the lessons ExMC learned through producing this HTML report.1Trade names and trademarks are used in this report for identification only. Their usage does not constitute an official endorsement, either expressed or implied, by the National Aeronautics and Space Administration.

Jeffrey R. Cohen↗
NASA NTRSDate not supplied

How ExMC Communicates a System Model to Non-Modelers

NASA’s Human Research Program (HRP) Exploration Medical Capability (ExMC) Element adopted Systems Engineering (SE) principles and Model Based Systems Engineering (MBSE) tools to capture the system functions, system architecture, requirements, interfaces, and clinical capabilities for a future exploration medical system. There are many different stakeholders who may use the information in the model: systems engineers, clinicians (physicians, nurses, and pharmacists), scientists, and mission planners. Many of these stakeholders have neither access to MBSE modeling tools nor experience with SE modeling techniques. The challenge faced by ExMC SE team was how to present the content in the model to non-modelers in a way they would understand the content with limited training in MBSE and without using the modeling tool. ExMC SE team created a Hypertext Markup Language (HTML) report that shows key model content and is accessible to anyone with a browser. When creating the HTML report, the ExMC SE received stakeholder feedback on what content they wanted and how to display this content. Incorporating this feedback, the report arranges the content in a way that directs readers through the SE process taken to derive the requirements and helps them to understand the fundamental steps in an SE approach. The report includes links to source information (e.g., NASA documentation that describes levels of care) and other SE products (e.g., Concept of Operations). These links were provided to aid in the understanding of how the team created this content through a methodical SE approach. This presentation outlines the process used to develop the model, the data chosen to share with stakeholders, many of the model elements used in the report, the review process stakeholders followed, the comments received from the stakeholders, and the lessons ExMC learned through producing this HTML report.

J. Cohen↗
NASA NTRSDate not supplied

Presenting Model-Based Systems Engineering Information to Non-Modelers

NASA’s Human Research Program’s (HRP) Exploration Medical Capability (ExMC) Element adopted Systems Engineering (SE) principles and Model Based Systems Engineering (MBSE) tools to capture the system functions, system architecture, requirements, interfaces, and clinical capabilities for a future exploration medical system. There are many different stakeholders who may use the information in the model: systems engineers, clinicians (physicians, nurses, and pharmacists), scientists, and program managers. Many of these individuals do not have access to MBSE modeling tools or have never used these tools. Many of these individuals (clinicians, scientists, even program managers) may have no experience with SE in general let alone interpreting a systems model. The challenge faced by ExMC was how to present the content in the model to non-modelers in a way they could understand with limited to no training in MBSE or the Systems Modeling Language (SysML) without using the modeling tool. Therefore, from the model, ExMC created an HTML report that is accessible to anyone with a browser. When creating the HTML report, the ExMC SE team talked to stakeholders and received their feedback on what content they wanted and how to display this content. Factoring in feedback, the report arranges the content in a way that not only directs readers through the SE process taken to derive the requirements, but also helps them to understand the fundamental steps in an SE approach. The report includes links to source information (i.e., NASA documentation that describes levels of care) and other SE deliverables (e.g., Concept of Operations). These links were provided to aid in the understanding of how the team created this content through methodical SE approach. This paper outlines the process used to develop the model, the data chosen to share with stakeholders, many of the model elements used in the report, the review process stakeholders followed, the comments received from the stakeholders, and the lessons ExMC learned through producing this HTML report.

Jeffrey R. Cohen↗
NASA NTRSDate not supplied

INCREASING THE TRANSPARENCY AND REPRODUCIBILITY OF SPACE RADIATION SCIENCE: THE RADIATION BIOLOGY ONTOLOGY

Among the primary objectives of the Open/Open-Source Science paradigm are making scientific investigation data transparent and results reproducible [1], objectives shared by the FAIR principles [2]. To accomplish this, the conceptual framework that includes all the investigation objects needs to be accurately captured and communicated to all data consumers. A large part of this requires using metadata standards to annotate data collected. These standards should be readily accessible, informed by scientific community consensus and sufficiently specific to encompass all of the important aspects of the investigation. Starting in 2020 we have been co-leading an open consortium to develop a new metadata standard, the Radiation Biology Ontology (RBO), through the Open Biological and Biomedical Ontologies (OBO) Foundry [3]. We began by transforming many of the terms from the National Council on Radiation Protection and Measurement into concepts that can be formally related to existing OBO Foundry classes or attributes. We then identified and imported into the RBO existing OBO Foundry classes that have obvious relevance for radiation biomedicine (for example, concepts from the Environment Ontology that describe radiative processes, and concepts from the Gene Ontology dealing with molecular and cellular responses to radiation). Finally, we scrutinized datasets from investigations of radiation effects held in NASA GeneLab and LSDA repositories and added additional classes, instances, and attributes into the RBO that should be used to annotate these data. We developed the RBO using the open-source tools of GitHub and publish the RBO periodically through the NIH/NCBI BioPortal website, so systems worldwide can leverage the knowledge it contains [4]. This initial phase of concept modeling has yielded an RBO that at present has more than 300 declared concepts, with more than 3500 additional concepts imported from other OBO Foundry ontologies. While this first phase has focused on concepts for annotating samples, environments, exposures, and measurements, the next phase will center on supporting annotation of results and findings, such as concept models of molecular, cellular and tissue effects. The value of the RBO will be determined in part by our ability to engage the community in its development, and we have established a Radiobiology Informatics Consortium with unrestricted membership as the owner of the RBO in order to encourage investigators, system owners and other to join in this effort. Anyone can report issues or request new concept modeling or other features directly on GitHub. By using the BioPortal application programming interface, systems can pose dynamic queries to the latest version of the RBO for information on individual classes or entire hierarchies; this design eliminates the need for systems to be updated in order to use newer versions of the RBO. We hope to contribute to the advancement of open radiobiological science through the continued, open development of the RBO, that will provide more precise, machine-interpretable descriptions of investigations, as well as support data meta-analysis through machine learning or other artificial intelligence methods. REFERENCES [1] Open science in space. Nature Medicine, 2021. 27(9): p. 1485-1485. [2] Wilkinson, M.D., et al., The FAIR Guiding Principles for scientific data management and stewardship. Sci Data, 2016. 3: p. 160018. [3] Smith, B., et al., The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol, 2007. 25(11): p. 1251-5. [4] Whetzel, P.L., et al., BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Res, 2011. 39(Web Server issue): p. W541-5.

informatics↗
NASA NTRSDate not supplied

In Search of Data-Driven Improvements to RANS Models Applied to Separated Flows

The goal of this work is to improve the capability of Reynolds-averaged Navier-Stokes turbulence models for separated flows using data-driven enhancements. The resulting model should be “universal” in the sense that it can be used by anyone and applied to as many flows as possible without concern for unusual or detrimental behavior. At worst, the data-driven corrections should not degrade the accuracy of the baseline model (in this case the Spalart-Allmaras one-equation model), while preserving the Galilean invariance and similar theoretical qualities of the original model. In the literature, most current data-driven improvements to turbulence models are only applicable to very similar types of cases as those used to train the model for a specific class of flows. In this work, the impact of using a wide array of cases in the machine-learning training is described. Unwanted behaviors from trained neural networks are examined, and possible mitigation strategies are proposed. However, to date, consistent and broadly applicable data-driven improvements for separated flows have not been achieved.

turbulence modeling↗
NASA NTRSDate not supplied

Fostering Open Science Inclusiveness for Interdisciplinary Users of Earth Observations

The term Open Science is subject to a variety of interpretations because of a key (and useful) ambiguity in the meaning of “Open”. Open in the sense of Transparency enables more trust in science research by making the details of the scientific process visible and accessible to anyone. “Open” in the sense of Inclusiveness enables more scientists from other disciplines to participate in research in a given discipline, thus producing more interdisciplinary research. Data Systems can play a major role in enabling Open (Inclusive) Science by making it easier for users from other disciplines to work with data within a given discipline. This is challenging for Earth Observation datasets, most of which are the product of advanced instrumentation and sophisticated, specialized variable retrieval algorithms and code. Serving the “extra-disciplinary”communities begins with simple things, like accessible, readable data documentation with adequate scaffolding. But just as important is provisioning Analysis-Ready data that does not require expert pre-processing. Disciplines also often have dominant toolsets, such as R in the biomass community or GIS in many applications communities. Ensuring that EO data are easy to use in the tools favored in other communities will enable more interdisciplinary research. Ideally, interdisciplinary research also benefits from scientists with different domain expertise. Platforms and frameworks that facilitate frictionless collaboration with discipline experts, together with capacity building efforts in those external disciplines also improve the inclusiveness aspect of Open Science. In short, Open Science is at root a way of thinking about how users from diverse discipline can best access and use data and services from a particular discipline.

Christopher Lynnes↗
NASA NTRSDate not supplied

Populating a Graph Database to Run a Usage-Based Discovery Tool

Most dataset discovery tools for Earth Observation data rely on descriptions and other metadata of the datasets, using keyword searches or attribute filtering to determine relevance. However, these descriptions often do not include the potential uses of the data. Thus, a user working on floods will rarely see few if any rainfall datasets show up in such a search. The Usage Based Discovery tool, on the other hand, offers usage instances to the user, either research articles or applications, along with the datasets that those usage instances used. This allows a user, particularly one new to the world of Earth Observation data, to investigate which datasets are used in similar cases. The information that powers Usage-Based Discovery is a graph database of relationships of usage to dataset and usage to topic, allowing the user to narrow their search for similar cases. In order to scale out to a graph database rich enough to provide a satisfactory user experience, we combine manual and automated processes to populate the graph. The initial content of the graph has been seeded primarily via human-aided data curation methods, using sites like Google Scholar. To scale up this effort, we’ve employed crowdsourcing. It is easy for anyone to contribute to our graph using their Open Researcher and Contributor Identifier for authorization. We’re now experimenting with Machine Learning and Natural Language Processing to help automate population of the graph, starting with the classification of research articles by topic. Finding adequate training data in the absence of a comprehensive and open research article API continues to be a significant challenge.

Vincent Inverso↗
NASA NTRSDate not supplied

INCREASING THE TRANSPARENCY AND REPRODUCIBILITY OF SPACE RADIATION SCIENCE: THE RADIATION BIOLOGY ONTOLOGY

Among the primary objectives of the Open/Open-Source Science paradigm are making scientific investigation data transparent and results reproducible [1], objectives shared by the FAIR principles [2]. To accomplish this, the conceptual framework that includes all the investigation objects needs to be accurately captured and communicated to all data consumers. A large part of this requires using metadata standards to annotate data collected. These standards should be readily accessible, informed by scientific community consensus and sufficiently specific to encompass all of the important aspects of the investigation. Starting in 2020 we have been co-leading an open consortium to develop a new metadata standard, the Radiation Biology Ontology (RBO), through the Open Biological and Biomedical Ontologies (OBO) Foundry [3]. We began by transforming many of the terms from the National Council on Radiation Protection and Measurement into concepts that can be formally related to existing OBO Foundry classes or attributes. We then identified and imported into the RBO existing OBO Foundry classes that have obvious relevance for radiation biomedicine (for example, concepts from the Environment Ontology that describe radiative processes, and concepts from the Gene Ontology dealing with molecular and cellular responses to radiation). Finally, we scrutinized datasets from investigations of radiation effects held in NASA GeneLab and LSDA repositories and added additional classes, instances, and attributes into the RBO that should be used to annotate these data. We developed the RBO using the open-source tools of GitHub and publish the RBO periodically through the NIH/NCBI BioPortal website, so systems worldwide can leverage the knowledge it contains [4]. This initial phase of concept modeling has yielded an RBO that at present has more than 300 declared concepts, with more than 3500 additional concepts imported from other OBO Foundry ontologies. While this first phase has focused on concepts for annotating samples, environments, exposures, and measurements, the next phase will center on supporting annotation of results and findings, such as concept models of molecular, cellular and tissue effects. The value of the RBO will be determined in part by our ability to engage the community in its development, and we have established a Radiobiology Informatics Consortium with unrestricted membership as the owner of the RBO in order to encourage investigators, system owners and other to join in this effort. Anyone can report issues or request new concept modeling or other features directly on GitHub. By using the BioPortal application programming interface, systems can pose dynamic queries to the latest version of the RBO for information on individual classes or entire hierarchies; this design eliminates the need for systems to be updated in order to use newer versions of the RBO. We hope to contribute to the advancement of open radiobiological science through the continued, open development of the RBO, that will provide more precise, machine-interpretable descriptions of investigations, as well as support data meta-analysis through machine learning or other artificial intelligence methods.

knowledge↗
NASA NTRSDate not supplied

Lower Mekong Hydrological Decision Support system

The Lower Mekong Hydrological Decision Support system (LMHDSs) is a environmental data analysis tool developed at the NASA Goddard Space Flight Center with funding from the SERVIR Applied Sciences Team and technical support from SERVIR Science Coordination Office (SCO). The web application allows stakeholders and decision-makers to view and download the inputs and outputs to the Soil and Water Assessment Tool(SWAT) model temporally and spatially. The front end is developed using JavaScript libraries like OpenLayers and Stock charts and the backend uses Django, a Python-based web framework. The web app provides several features, including visualizing map products, time-series plots, land-use/land-cover and associated soil information, and a data cart for downloading data. In addition, LMHDSs incorporates the NASAaccess software package, which provides seamless access to various climate and weather data products from NASA’s Earth observations portfolio. The application is region agnostic (any valid SWAT model can be used), modular (different components of the applications can be customized), and open (anyone can download and run it on their end). The web app is currently in use by the Mekong River Commission (MRC), a treaty-based regional intergovernmental organization that is made up of Mekong countries, as part of its hydrological decision support.

Hydrology↗
NASA NTRS2025

Tutorial: MATLAB Implementation of a Successive Convexification Algorithm for 3 DoF Rocket Landings

The primary objective of this work is to fill in gaps and explore an alternate way of solving the 3 DoF rocket-powered landing problem presented in the 2016 AIAA paper by Szmuk, Ackimese, and Berning using successive convexification (SCvx). In the original paper, CVX, an automatic parsing package, was used to transcribe the high-level trajectory optimization problem into a format that could be read by a conic solver. The parsing step, generally computationally intensive, is hidden from the user. The use of CVX is sufficient for the generation of trajectories off-line due to the lack of runtime and flight software implementation constraints. For on-line applications, it is necessary to parse the problem for flight software implementation. References on hand-parsing powered descent guidance (PDG) problems are sparse. In this Tech Memo, the process of transcribing the 3 DoF PDG problem into the format required by MATLAB’s built-in second-order cone solver, coneprog.m, is presented in detail. Due to the abridged 3 DoF dynamics and the relatively simple nonlinearities, this reference is the natural starting point for anyone interested in grasping the concepts behind SCvx pertaining to PDG and the parsing step. Simulation results shown in this report were independently created by solving the problem using coneprog.m. The intent of this memo is to serve as a supplemental material to the original paper by breaking down the concept behind successive convexification and shed light into the parsing process. Readers are encouraged to first familiarize themselves with the material laid out in the original reference.

Alex Hayes↗
NASA NTRSDate not supplied

Increasing Accessibility of the Runs-on-Request Metadata, Data, and Services at the Community Coordinated Modeling Center

Space weather models are essential to our ability to understand and predict space weather events. For over 20 years, the Community Coordinated Modeling Center (CCMC, https://ccmc.gsfc.nasa.gov) has been providing transformative tools and platforms for hosting space weather models and associated services, free and open to anyone interested in studying space weather. Runs-on-Request system (ROR) is one of the popular services at CCMC that permits researchers and other end-users to exercise cutting-edge hosted heliophysics and space weather models using a simple web interface, as well as collaborate on an extensive and continuously growing archive of over 28,000 model run results. Similar to other projects at CCMC, ROR has grown as a community project that strives to be open and transparent to its users. In this poster, we discuss some of our recent efforts to further expose ROR data, metadata, and services to the end users through both custom and community-developed access protocols. We also discuss how in-house science support provided by the CCMC team plays a paramount role in making ROR data and services truly accessible by the community.

Maksym Petrenko↗