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At least 289 records · Page 16

Long-term, large-scale experiment reveals the effects of seed limitation, climate, and anthropogenic disturbance on restoration of plant communities in a biodiversity hotspot

Ecological restoration is essential for maintaining biodiversity in the face of dynamic, global changes in climate, human land use, and disturbance regimes. Effective restoration requires understanding bottlenecks in plant community recovery that exist today, while recognizing that these bottlenecks may relate to complex histories of environmental change. Such understanding has been a challenge because few long-term, well-replicated experiments exist to decipher the demographic processes influencing recovery for numerous species against the backdrop of multiyear variation in climate and management. Here we address this challenge through a long-term and geographically expansive experiment in longleaf pine savannas, an imperiled ecosystem and biodiversity hotspot in the southeastern United States. Using 48 sites at three locations spanning 480 km, the 8-y experiment manipulated initial seed arrival for 24 herbaceous plant species and presence of competitors to evaluate the impacts of climate variability and management actions (e.g., prescribed burning) on plant establishment and persistence. Adding seeds increased plant establishment of many species. Cool and wet climatic conditions, low tree density, and reduced litter depth also promoted establishment. Once established, most species persisted for the duration of the 8-y experiment. Plant traits were most predictive when tightly coupled to the process of establishment. Our results illustrate how seed additions can restore plant diversity and how interannual climatic variation affects the dynamics of plant communities across a large region. The significant effects of temperature and precipitation inform how future climate may affect restoration and conservation via large-scale changes in the fundamental processes of establishment and persistence.

60 APPLIED LIFE SCIENCES↗

Surrogate modelling for urban building energy simulation based on the bidirectional long short-term memory model

Here, the urban microclimate is essential for accurate simulation-based urban building energy modelling (UBEM). However, a high spatial-resolution microclimate can increase the computational resources demands of UBEM. Surrogate modelling is one of the promising approaches for fast UBEM. This study proposes a bidirectional Long Short-Term Memory (LSTM)-based approach for simulation-based UBEM surrogate modelling. The estimations are aggregated into census tracts using total building floor area. A case study using UBEM to estimate annual hourly building energy use and anthropogenic heat from all existing buildings in Los Angeles County found that most of the surrogate models can complete the annual hourly simulation within 90 minutes with a normalized mean absolute error lower than 10%, and that the bidirectional LSTM outperforms the standard LSTM in accuracy. This study demonstrates the advantages of bidirectional RNN architecture in building energy surrogate modelling and is expected to promote long-term and high-resolution UBEM with detailed microclimates.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Influences of δB contribution and parallel inertial term of energetic particles on MHD-kinetic hybrid simulations: a case study of the 1/1 internal kink mode

The magnetohydrodynamic-kinetic (MHD-kinetic) hybrid model (Park et al 1992 Phys. Fluids B 4 2033–7) has been widely applied in studying energetic particles (EPs) problems in fusion plasmas for past decades. The pressure-coupling scheme or the current-coupling scheme is adopted in this model. However, two noteworthy issues arise in the model application: firstly, the coupled term introduced in the pressure-coupling scheme, (∇•P h ) ⟂ , is often simplified by ∇•P h , which is equivalent to neglecting the parallel inertial term of EPs; secondly, besides the $δf$ contribution caused by changing in the EP distribution function, the magnetic field perturbation (the $δB$ contribution) generated during development of the instabilities should also be considered, but it is often ignored in existing hybrid simulations. In this paper, we derive the analytical formulations under these two coupling schemes and then numerically study the representative case of the linear stability of the $m/n$ = $1/1$ internal kink mode (IKM) (Fu et al 2006 Phys. Plasmas 13 052517) by using the CLT-K code. Further, it is found that the approximated models can still yield reasonable results when EPs are isotopically distributed. But it fails completely in cases with anisotropic EP distributions. In addition, we further investigate the influence of EP's orbit width on the stability of IKM and verify the equivalence between pressure-coupling scheme and the current-coupling scheme.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Long-term trends of impacts of global gasoline and diesel emissions on ambient PM 2.5 and O 3 pollution and the related health burden for 2000–2015

Global economic development and urbanization during the past two decades have driven the increases in demand of personal and commercial vehicle fleets, especially in developing countries, which has likely resulted in changes in year-to-year vehicle tailpipe emissions associated with aerosols and trace gases. However, long-term trends of impacts of global gasoline and diesel emissions on air quality and human health are not clear. In this study, we employ the Community Earth System Model in conjunction with the newly developed Community Emissions Data System as anthropogenic emission inventory to quantify the long-term trends of impacts of global gasoline and diesel emissions on ambient air quality and human health for the period of 2000–2015. Global gasoline and diesel emissions contributed to regional increases in annual mean surface PM 2.5 (particulate matter with aerodynamic diameters ≤2.5 μm) concentrations by up to 17.5 and 13.7 µg m –3 , and surface ozone (O 3 ) concentrations by up to 7.1 and 7.2 ppbv, respectively, for 2000–2015. However, we also found substantial declines of surface PM 2.5 and O 3 concentrations over Europe, the US, Canada, and China for the same period, which suggested the co-benefits of air quality and human health from improving gasoline and diesel fuel quality and tightening vehicle emissions standards. Globally, we estimate the mean annual total PM 2.5- and O 3 -induced premature deaths are 139 700–170 700 for gasoline and 205 200–309 300 for diesel, with the corresponding years of life lost of 2.74–3.47 and 4.56–6.52 million years, respectively. Diesel and gasoline emissions create health-effect disparities between the developed and developing countries, which are likely to aggravate afterwards.

54 ENVIRONMENTAL SCIENCES↗

Short-Term Energy and Meteorological Impacts on Thanksgiving CO2 in Salt Lake City

Abstract Long-term, high-frequency atmospheric CO2 measurements at multiple sites in the Salt Lake City (SLC), Utah, reveal that annual and monthly CO2 variability aligns with a priori estimates of emissions from anthropogenic and biological sources. In this study, we investigate whether short-term fluctuations in anthropogenic emissions, as captured in the Vulcan3 dataset for the United States, can be detected in atmospheric CO2 observations. Specifically, we focus on Thanksgiving holidays, when traffic and energy usage patterns differ from the rest of November. Onroad CO2 emissions exhibit a double peak during weekday morning and evening rush hours but remain relatively low on weekends and Thanksgiving. Interestingly, CO2 mole fractions during Thanksgiving were higher than the rest of November at all SLC monitoring sites, particularly from 2008 to 2013. This increase is partially attributed to elevated energy-related emissions — especially residential sources — and meteorological factors such as weak wind speeds, cold temperature, and a low planetary boundary layer height (PBLH).

 While CO₂ emissions and mole fraction patterns align over time, notable spatial differences exist. For instance, the near-highway site in Murray shows the highest CO₂ mole fractions despite low local emissions, suggesting pollution transport via highways and wind advection. Random Forest model-based SHapley Additive exPlanations (SHAP) analysis reveals that onroad emissions dominate CO2 contributions on weekdays and weekends, while energy-related emissions play a larger role during Thanksgiving, alongside meteorological drivers such as wind speed and PBLH. Across six urban cities, CO2 emissions display a consistent pattern: residential and commercial (onroad) emissions peak during Thanksgiving (weekday) with substantial (minimal) year-to-year variability. These findings highlight that urban CO₂ variability is driven by the combined influence of emissions and meteorology, underscoring the need for integrated mitigation strategies. Additionally, multi-site measurements are essential for accurate source attribution and the development of effective policy interventions. 

Ryoo, Ju-Mee (ORCID:0000000234256296)↗

Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions

ABSTRACT The anaerobic digestion of wastes is globally important in the production of methane (CH4) as a biofuel. When sulfate is present, sulfate-reducing bacteria (SRB) are stimulated, competing with methanogens for common substrates, which decreases CH4 production and results in the formation of corrosive, odorous hydrogen sulfide gas (H2S). Here, we show that a population of SRB within a methanogenic bioreactor fed only butyrate for years immediately (within hours) responded to sulfate availability and shifted the microbial community dynamics within the bioreactor. By mapping shotgun metatranscriptomes to metagenome-assembled genomes, we shed light on the transcriptomic responses of key community members in response to increased sulfate provision. We link these short-term transcriptional responses to long-term niche partitioning using comparative metagenomic analyses. Our results suggest that sulfate provision supports a syntrophic butyrate oxidation community that disfavors poly-β-hydroxyalkanoate storage and that hydrogenotrophic SRB populations effectively exclude obligately hydrogenotrophic, but not aceticlastic, methanogens when sulfate is readily available. These findings elucidate key ecological dynamics between SRB, methanogens and syntrophic butyrate-oxidizing bacteria, which can be applied to a variety of engineered and natural systems.

St. James, Andrew R.↗

Worldwide Population Genomics Reveal Long-Term Stability of the Mitochondrial Genome Architecture in a Keystone Marine Plant

Mitochondrial genomes (mitogenomes) of flowering plants are composed of multiple chromosomes. Recombination within and between the mitochondrial chromosomes may generate diverse DNA molecules termed isoforms. The isoform copy number and composition can be dynamic within and among individual plants due to uneven replication and homologous recombination. Nonetheless, despite their functional importance, the level of mitogenome conservation within species remains understudied. Whether the ontogenetic variation translates to evolution of mitogenome composition over generations is currently unknown. Here we show that the mitogenome composition of the seagrass Zostera marina is conserved among worldwide populations that diverged ca. 350,000 years ago. Using long-read sequencing, we characterized the Z. marina mitochondrial genome and inferred the repertoire of recombination-induced configurations. To characterize the mitochondrial genome architecture worldwide and study its evolution, we examined the mitogenome in Z. marina meristematic region sampled in 16 populations from the Pacific and Atlantic oceans. Our results reveal a striking similarity in the isoform relative copy number, indicating a high conservation of the mitogenome composition among distantly related populations and within the plant germline, despite a notable variability during individual ontogenesis. Our study supplies a link between observations of dynamic mitogenomes at the level of plant individuals and long-term mitochondrial evolution.

(sub)stoichiometric shifting↗

Gene Expression Thresholds Derived From Short-term Exposures Identify Rat Liver Tumorigens

Abstract Traditional methods for cancer risk assessment are resource-intensive, retrospective, and not feasible for the vast majority of environmental chemicals. In this study, we investigated whether quantitative genomic data from short-term studies may be used to set protective thresholds for potential tumorigenic effects. We hypothesized that gene expression biomarkers measuring activation of the key early events in established pathways for rodent liver cancer exhibit cross-chemical thresholds for tumorigenesis predictive for liver cancer risk. We defined biomarker thresholds for 6 major liver cancer pathways using training sets of chemicals with short-term genomic data (3–29 days of exposure) from the TG-GATES (n = 77 chemicals) and DrugMatrix (n = 86 chemicals) databases and then tested these thresholds within and between datasets. The 6 pathway biomarkers represented genotoxicity, cytotoxicity, and activation of xenobiotic, steroid, and lipid receptors (aryl hydrocarbon receptor, constitutive activated receptor, estrogen receptor, and peroxisome proliferator-activated receptor α). Thresholds were calculated as the maximum values derived from exposures without detectable liver tumor outcomes. We identified clear response values that were consistent across training and test sets. Thresholds derived from the TG-GATES training set were highly predictive (97%) in a test set of independent chemicals, whereas thresholds derived from the DrugMatrix study were 96%–97% predictive for the TG-GATES study. Threshold values derived from an abridged gene list (2/biomarker) also exhibited high predictive accuracy (91%–94%). These findings support the idea that early genomic changes can be used to establish threshold estimates or “molecular tipping points” that are predictive of later-life health outcomes.

Hill, III,, Thomas↗

Perturbative readout-error mitigation for near-term quantum computers

Readout errors on near-term quantum computers can introduce significant error to the empirical probability distribution sampled from the output of a quantum circuit. These errors can be mitigated by classical postprocessing given the access of an experimental response matrix that describes the error associated with the measurement of each computational basis state. However, the resources required to characterize a complete response matrix and to compute the corrected probability distribution scale exponentially with the number of qubits, n . In this work, we modify standard matrix inversion techniques using perturbative approximations with significantly reduced complexity and bounded error when the likelihood of high-order bit-flip events is strongly suppressed. Given a characteristic error rate q , we discuss a method to recover the probability of the all-zeros bit string p 0 by sampling only a small subspace of the response matrix before inverting readout error, resulting in a relative speedup of poly [ 2 n / ( n w ) ] , which we motivate using a simplified error model for which the approximation incurs only O ( q w ) error for some integer w . We then provide a generalized technique to efficiently recover full output distributions with O ( q w ) error in the perturbative limit. These approximate techniques for readout-error correction may greatly accelerate near-term quantum computing applications.

97 MATHEMATICS AND COMPUTING↗

Geometric origin of the energy-momentum tensor improvement terms

In a flat background, the canonical energy momentum tensor of Lorentz and conformally invariant matter field theories can be improved to a symmetric and traceless tensor that gives the same conserved charges. We argue that the geometric origin of this improvement process is unveiled when the matter theory is coupled to metric-affine gravity. In particular, we show that the Belinfante-Rosenfeld improvement terms correspond to the matter theory’s hypermomentum. The improvement terms in conformally invariant matter theories are also related to the hypermomentum; however, a general proof would require an extended investigation. We demonstrate our results through various examples, such as the free massless scalar, the Maxwell field, Abelian p-forms, the Dirac field, and a nonunitary massless scalar field. Possible applications of our method for theories that break Lorentz or special conformal invariance are briefly discussed.

classical solutions in field theory↗

Quasi-Static Time Series Fatigue Simulation for PV Inverter Semiconductors with Long-Term Solar Profile

Power system simulations with long-term data tend to have large time steps varying from one second to a few minutes. However, for PV inverter semiconductors, the minimum thermal stresses cycle is with line frequency. This requires the time step of the fatigue simulation to be much smaller than the line period. This small time step results in poor simulation speed, especially for long-term simulations. This paper proposes a fast fatigue simulation for inverter semiconductors using the quasi-static time series (QSTS) simulation concept. The fatigue analysis typically focuses on the peak and valley values of a strain and neglect the transients from peaks to valleys. The proposed simulation utilizes this property of fatigue analysis and calculates the steady state of the semiconductor junction temperature only. The resulting time step of the fatigue simulation is 15 minutes, which is consistent with the solar dataset without losing accuracy.

fast simulation↗

Which Plant Traits Increase Soil Carbon Sequestration? Empirical Evidence From a Long‐Term Poplar Genetic Diversity Trial

Plants play a key role in mediating soil response to global change, and breeding or engineering crops to increase soil organic carbon (SOC) storage is a potential route to land-based carbon dioxide removal in agricultural systems. However, due to limited observational datasets plus shifting paradigms of SOC stabilization, it is unclear which plant traits are most important for enhancing different types of soil organic matter. Existing long-term common gardens of genetically diverse plant populations may provide an opportunity to evaluate biological controls on SOC, separate from environmental or management variability. Here we report on soil and root chemical data collected for 24 genotypes within a 13-year-old common garden in northwestern Oregon planted with a large natural variant population of Populus trichocarpa. Fractionating surface soil (0–15 cm) revealed substantial variation in stocks of mineral-associated organic matter (MAOM; 18–67 t C/ha) and particulate organic matter (POM; 2–22 t C/ha). Tree genotype explained 24% and 26% of the MAOM and POM stock variability, respectively, after controlling for background variability. We found minimal association between SOC concentration and either aboveground tree productivity or root biomass recalcitrance (C/N ratios and lignin content). In contrast, root elemental content appeared influential for MAOM-C concentration, which showed a strong positive association with root aluminum (Al) and a strong negative association with root boron (B) and magnesium (Mg). Furthermore, root concentrations of these elements were highly heritable (57%–78%) and not simply a reflection of background variation in soil elemental concentrations. We estimate that surface SOC stocks under these 24 genotypes have diverged at rates of up to 1.2–4.3 t C/ha/year. These results suggest that long-term genetic diversity trials have value for elucidating biological controls on soil organic matter dynamics, and that traits associated with root elemental content may be a useful target for enhancing biosequestration.

biomass recalcitrance↗

Operando Acoustic Monitoring of SEI Formation and Long-Term Cycling in NMC/SiGr Composite Pouch Cells

Stable long-term cycling and solid-electrolyte-interphase (SEI) formation are key challenges in the design of Si/graphite composites as Li-ion battery (LIB) anode materials. Typically, these long-term cycling properties are examined in flooded half-cell settings making use of a Li-metal counter electrode and a Si/graphite working electrode. This form factor has the advantage of offering an unlimited supply of Li-ions and electrolyte, thus isolating performance degradation to the passivation of the working electrode. However, half-cell studies are ineffective in revealing performance and degradation mechanisms of the Si/graphite composite in a more commercially realistic full cell setting. This paper outlines an operando acoustic technique that can offer insights on SEI formation and capacity degradation of Si/graphite composites in a full cell setting. Through a combination of electrochemical and chemical analyses, we show that increasing passivation of the silicon particles in the Si/graphite composite anode is correlated with an increase in the acoustic time-of-flight shift. We further show that temporary loss of the acoustic signal during the first cycle is associated with significant gassing of the cell. The operando acoustic technique outlined here is low-cost, simple to setup and has the potential for localized resolution, indicating usefulness in commercial-scale Si/graphite cell quality control and diagnosis.

42 ENGINEERING↗

Carbohydrate supplementation maintains physical performance during short-term energy deficit despite reductions in exogenous glucose oxidation

Short-term (6-day) energy deficit reduced exogenous glucose oxidation during exercise. Though less exogenous glucose was used for fuel, young healthy individuals appear to have a metabolic resilience to short-term periods of low energy availability, with no observed differences in the ability to take up and oxidize exogenous glucose between minimal (20%), moderate (40%), and severe (60%) energy deficits. Similar metabolic responses to carbohydrate supplementation independent of deficit severity likely contributed to sustainment of physical performance.

Margolis, Lee M. (ORCID:0000000206521304)↗

Spatio-temporal Fourier Transformer for Long-term Dynamics Prediction (StFT) v1.0

We propose a novel machine learning model spatio-temporal Fourier transformer (StFT) to emulate long-term dynamics of multi-scale and multi-physics systems. Our method StFT overcomes the limitations of rapid error accumulation, particularly in long-term forecasting of systems characterized by complex and coupled dynamics. StFT achieves outstanding accuracy and computational efficiency by effectively capturing multi-scale interactions, and quantify the uncertainties inherent in the predictions. Our model leverages a structured hierarchy of StFT blocks, and explicitly captures dynamics across both macro- and micro- spatial scales. Evaluations conducted on three benchmark datasets (plasma, fluid, and atmospheric dynamics) demonstrate the advantages of our approach over state-of-the-art ML methods.

Bai, Zhe [Lawrence Berkeley National Laboratory (L↗

Triso Analysis Tool For Predictive Source Terms

Source term modeling for TRi-structural ISOtropic (TRISO) fuel has been performed for previous reactor designs, but few are available in the open literature. Thus, there is a need to develop a simple, versatile, and mechanistic model of fission product release and transport in gas reactor cores that can be applied to a variety of reactors through user inputs and reactor-specific radionuclide inventories. To meet this need, the TRISO Analysis Tool for Predictive Source terms (TRISO-ATOPS) was developed. This model calculates the release of the key safety-important fission products by diffusion through the kernel, silicon carbide and graphite based on fuel and graphite temperatures in the reactor under normal operation. These releases from the fuel enter the coolant where they can plate-out on cooler surfaces. A clean-up model is included for designs with a coolant purification system for removing fission gases. This initial distribution of fission products in the reactor serves as an initial condition for potential releases under postulated accident conditions. From this initial condition, the model calculates the fission product release for any transient temperature profile, and the fission product releases can then be used to assess radiological dose to the workers and the public using conventional radiological dose tools. Data on the diffusion of fission products is based on historic German TRISO experiments and the more current Department of Energy Advanced Gas Reactor TRISO fuel development program. The example cases in this work demonstrate the flexibility of the model

Stoyer, Benjamin [Idaho National Laboratory (INL),↗

Omega-3 fatty acids attenuate cardiovascular effects of short-term exposure to ambient air pollution

Background: Exposure to air pollution is associated with elevated cardiovascular risk. Evidence shows that omega-3 polyunsaturated fatty acids (omega-3 PUFA) may attenuate the adverse cardiovascular effects of exposure to fine particulate matter (PM 2.5 ). However, it is unclear whether habitual dietary intake of omega-3 PUFA protects against the cardiovascular effects of short-term exposure to low-level ambient air pollution in healthy participants. In the present study, sixty-two adults with low or high dietary omega-3 PUFA intake were enrolled. Blood lipids, markers of vascular inflammation, coagulation and fibrinolysis, and heart rate variability (HRV) and repolarization were repeatedly assessed in 5 sessions separated by at least 7 days. This study was carried out in the Research Triangle area of North Carolina, USA between October 2016 and September 2019. Daily PM 2.5 and maximum 8-h ozone (O 3 ) concentrations were obtained from nearby air quality monitoring stations. Linear mixed-effects models were used to assess the associations between air pollutant concentrations and cardiovascular responses stratified by the omega-3 intake levels. Results: The average concentrations of ambient PM 2.5 and O 3 were well below the U.S. National Ambient Air Quality Standards during the study period. Significant associations between exposure to PM 2.5 and changes in total cholesterol, von Willebrand factor (vWF), tissue plasminogen activator, D-dimer, and very-low frequency HRV were observed in the low omega-3 group, but not in the high group. Similarly, O 3 -associated adverse changes in cardiovascular biomarkers (total cholesterol, high-density lipoprotein, serum amyloid A, soluable intracellular adhesion molecule 1, and vWF) were mainly observed in the low omega-3 group. Lag-time-dependent biphasic changes were observed for some biomarkers. Conclusions: This study demonstrates associations between short-term exposure to PM 2.5 and O 3 , at concentrations below regulatory standard, and subclinical cardiovascular responses, and that dietary omega-3 PUFA consumption may provide protection against such cardiovascular effects in healthy adults.

59 BASIC BIOLOGICAL SCIENCES↗

Long Term Per-Component Power and Thermal Measurements of the OLCF Summit System

As we move into the exascale era, the power and energy footprints of high-performance computing (HPC) systems have grown significantly larger. Due to the harsh power and thermal conditions the system, components are exposed to extreme operating conditions. Operation of such modern HPC systems requires deep insights into long term system behavior to maintain its efficiency as well as its longevity. To help the HPC community to gain such insights, we provide a dataset that records the long-term power and thermal behavior of the 200PF pre-exascale supercomputer at the Oak Ridge Leadership Computing Facility (OLCF), Summit. This system is an IBM AC922 based system that has 9,252 IBM Power9 CPUs and 27,756 Nvidia V100 GPUs and can consume up to 13MW power at peak. Heat removal is performed using medium temperature direct liquid cooling and rear-door heat exchanger based secondary cooling loop. Originally extracted from a high-resolution (1Hz) per-component (GPUs, CPUs) measurements from the system, we primarily provide a dataset that has 10-second and 1-minute mean power and thermal measurements selected from five month-long segments over the course of 2020 (January and August), 2021 (February and August), and 2022 (January). For convenience, we also provide various sub datasets randomly sampled from the time and space (hosts) of the cluster. Further details and example code for analysis can be found in the following GitHub repository: https://github.com/at-aaims/summit_power_and_thermal_data

97 MATHEMATICS AND COMPUTING↗