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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 289 records · Page 16
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Bacterial and fungal growth on fungal necromass and its diverse components: Shared profiles and divergent constraints revealed by high‐throughput phenotyping

1. While fungal necromass is increasingly recognized as a major source of persistent carbon (C) in soils, the relative functional roles of bacteria and fungi in decomposing necromass are not fully resolved, and the processes that select for necromass decomposer communities from the broader soil microbial community are an emerging area of interest. 2. In this study, we characterized the growth of 52 bacterial and 83 fungal strains isolated from necromass and soil on 22 C substrates, including different necromass phenotypes, fungal cell wall polymers, dimers and monomers. 3. We found that the isolation habitat of the strains used in this experiment (necromass vs. soil) had no effect on the substrates they were able to use. Isolates from both microbial domains were able to grow on different labile carbon substrates, polymers and necromass phenotypes. However, fungal growth was most limited by necromass melanin content, while bacterial growth was more limited by the abundance of cell wall polysaccharides. Additionally, overall differences in substrate use between bacteria and fungi were most pronounced on polymer substrates. 4. Collectively, our results suggest that there is substantial functional overlap in necromass substrate use across microbial domains, but some notable differences in bacterial and fungal utilization of cell wall polymers, which can function as a direct energy source or a means of accessing other compounds within necromass. Future studies assessing bacteria and fungi decomposing necromass together rather than in isolation will help to uncover potential physical and chemical interactions within and between these two domains during the decay of this important source of persistent soil C.

dead fungal biomass↗
DOE OSTI2020

Structural basis of a shared antibody response to SARS-CoV-2

Molecular understanding of neutralizing antibody responses to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) could accelerate vaccine design and drug discovery. We analyzed 294 anti–SARS-CoV-2 antibodies and found that immunoglobulin G heavy-chain variable region 3-53 (IGHV3-53) is the most frequently used IGHV gene for targeting the receptor-binding domain (RBD) of the spike protein. Co-crystal structures of two IGHV3-53–neutralizing antibodies with RBD, with or without Fab CR3022, at 2.33- to 3.20-angstrom resolution revealed that the germline-encoded residues dominate recognition of the angiotensin I converting enzyme 2 (ACE2)–binding site. This binding mode limits the IGHV3-53 antibodies to short complementarity-determining region H3 loops but accommodates light-chain diversity. These IGHV3-53 antibodies show minimal affinity maturation and high potency, which is promising for vaccine design. Knowledge of these structural motifs and binding mode should facilitate the design of antigens that elicit this type of neutralizing response.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Data sharing helps avoid “smoking gun” claims of topological milestones

Manipulating the topology of electronic bands can realize new states of matter, with possible implications for information technology. A central question is how to tell whether a topological regime has been achieved. Experiments are often guided by a prediction of a distinct and self-explanatory signal called “the smoking gun.” However, in micrometer- or nanometer-scale specimens, phenomenology can mimic the anticipated behavior without containing the exotic states. We show limited data that are consistent with the presence of four topological phenomena; by considering additional data, we identified the most likely origins of the observed patterns as trivial. Finally, we argue that the reliability of smoking gun–type claims can be greatly enhanced by releasing comprehensive datasets, discussing alternative scenarios, and disclosing the total volume of study.

Frolov, S. M. [Univ. of Pittsburgh, PA (United Sta↗
DOE OSTI2023

Analysis of a Runtime Data Sharing Architecture over LTE for a Heterogeneous CAV Fleet

This paper describes a lightweight runtime architecture for telemetry, communication, and control of cars deployed with advanced driver assistance systems where a human is in the loop with the car, via an LTE connection. The system architecture supports both local control decisions based on car sensors and safety algorithms as well as high-level input from external systems that may provide insight into traffic state ahead of sensor data. Implementation of the architecture is done in ROS and depends on open-source software packages for runtime decoding of information from the vehicle’s controller area network (CAN) and integration of GPS data from accompanying sensors. The contribution of the paper is to describe the overall architecture, the data it can communicate to other systems, performance of the system at runtime, and challenges faced when deploying the architecture across a heterogeneous fleet. Preliminary results from analysis of test data will provide insights into whether the use of high-latency communication can be effective for societal-scale intelligent transportation systems when applied in future scenarios

Richardson, Alex↗
DOE OSTI2025

ScaWL: Scaling k-WL (Weisfeiler-Lehman) Algorithms in Memory and Performance on Shared and Distributed-Memory Systems

The k-dimensional Weisfeiler-Lehman (k-WL) algorithm—developed as an efficient heuristic for testing if two graphs are isomorphic—is a fundamental kernel for node embedding in the emerging field of graph neural networks. Unfortunately, the k-WL algorithm has exponential storage requirements, limiting the size of graphs that can be handled. This work presents a novel k-WL scheme with a storage requirement orders of magnitude lower while maintaining the same accuracy as the original k-WL algorithm. Due to the reduced storage requirement, our scheme allows for processing much bigger graphs than previously possible on a single compute node. For even bigger graphs, we provide the first distributed-memory implementation. Our k-WL scheme also has significantly reduced communication volume and offers high scalability. Our experimental results demonstrate that our approach is significantly faster and has superior scalability compared to five other implementations employing state-of-the-art techniques.

algorithims↗
DOE OSTI2022

In silico evolution of oscillatory gene dynamics formerly Code sharing for a manuscript to be submitted to the journal iScience

The disclosure is about the numerical simulations and visualization implemented in general-purpose language Python and C++. The simulations were in-silico evolution of hypothetical gene circuits that potentially admit oscillatory dynamics. The aim of the study, which was invited to be submitted to a special issue "Timekeeping, noise and development across kingdoms" in the journal iScience, is to demonstrate that in contrast to common belief, noise in gene expression dynamics could significantly facilitate the evolutionary process for searching oscillatory dynamics, which are essential for developing circadian rhythm in living organisms.

Lin, Yen Ting↗
DOE OSTI2022

Comparative metabolomic analysis reveals shared and unique chemical interactions in sponge holobionts

Sponges are ancient sessile metazoans, which form with their associated microbial symbionts a complex functional unit called a holobiont. Sponges are a rich source of chemical diversity; however, there is limited knowledge of which holobiont members produce certain metabolites and how they may contribute to chemical interactions. To address this issue, we applied non-targeted liquid chromatography tandem mass spectrometry (LC-MS/MS) and gas chromatography mass spectrometry (GC-MS) to either whole sponge tissue or fractionated microbial cells from six different, co-occurring sponge species. Several metabolites were commonly found or enriched in whole sponge tissue, supporting the notion that sponge cells produce them. These include 2-methylbutyryl-carnitine, hexanoyl-carnitine and various carbohydrates, which may be potential food sources for microorganisms, as well as the antagonistic compounds hymenialdisine and eicosatrienoic acid methyl ester. Metabolites that were mostly observed or enriched in microbial cells include the antioxidant didodecyl 3,3'-thiodipropionate, the antagonistic compounds docosatetraenoic acid, and immune-suppressor phenylethylamide. This suggests that these compounds are mainly produced by the microbial members in the sponge holobiont, and are potentially either involved in inter-microbial competitions or in defenses against intruding organisms. This study shows how different chemical functionality is compartmentalized between sponge hosts and their microbial symbionts and provides new insights into how chemical interactions underpin the function of sponge holobionts.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

kokkos-fft: A shared-memory FFT for the Kokkos ecosystem

kokkos-fft provides a unified, performance-portable interface for Fast Fourier Transforms (FFTs) within the Kokkos ecosystem (C. Trott et al., 2021). It seamlessly integrates with leading local FFT libraries including FFTW, cuFFT, rocFFT, and oneMKL. Designed for simplicity and efficiency, kokkos-fft offers a user experience akin to numpy.fft for in-place and out-of-place transforms, while leveraging the raw speed of vendor-optimized libraries. A demonstration solving 2D Hasegawa-Wakatani turbulence with the Fourier spectral method illustrates how kokkos-fft can deliver significant speedups over Python-based alternatives without drastically increasing code complexity, empowering researchers to perform high-performance FFTs simply and effectively.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Realizing High-Accuracy Low-Cost Measurement and Verification for Deep Cost Savings (BPA Cost Share CRADA)

Developed practitioner workflows that integrate advanced M&V tools with supplementary automated routines for non-routine adjustments and for quantification of savings uncertainty to indicate rigor. Demonstrated these workflows with Seattle City Light, in collaboration with their implementers and evaluators – determine labor and time/cost savings, and uncertainty of the results obtained. Engaged the Pacific Northwest regulatory community to determine acceptance criteria for the required accuracy and reporting of advanced whole-building M&V. Documented the findings to facilitate broad industry uptake of the solutions.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2020

The Ultimate Safety Share [Slides]

The presentation discusses the history of safety at Los Alamos National Laboratory including fatal accidents that have occurred.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗
DOE OSTI2020

Sharing the Sun: Understanding Community Solar Deployment and Subscriptions

This presentation reviews trends in the national community solar market, with project data through 2019 and subscriber data through 2018. It summarizes data on community solar deployment over time, by state, and by project characteristics. It also examines how market factors have shaped community solar deployment and explores data on the community solar value proposition to subscribers.

14 SOLAR ENERGY↗