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At least 289 records · Page 16

All sources NASA NTRS DOE OSTI

DOE OSTI2021

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

Metaproteomics has matured into a powerful tool to assess functional interactions in microbial communities. While many metaproteomic workflows are available, the impact of method choice on results remains unclear. Here, we carry out a community-driven, multi-laboratory comparison in metaproteomics: the critical assessment of metaproteome investigation study (CAMPI). Based on well-established workflows, we evaluate the effect of sample preparation, mass spectrometry, and bioinformatic analysis using two samples: a simplified, laboratory-assembled human intestinal model and a human fecal sample. We observe that variability at the peptide level is predominantly due to sample processing workflows, with a smaller contribution of bioinformatic pipelines. These peptide-level differences largely disappear at the protein group level. While differences are observed for predicted community composition, similar functional profiles are obtained across workflows. CAMPI demonstrates the robustness of present-day metaproteomics research, serves as a template for multi-laboratory studies in metaproteomics, and provides publicly available data sets for benchmarking future developments.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

IMAGINE: The neutron protein crystallography beamline at the high flux isotope reactor

IMAGINE is a high intensity, quasi-Laue neutron crystallography beamline developed at the 85 MW High Flux Isotope Reactor (HFIR) at Oak Ridge National Laboratory (ORNL). This state-of-the-art facility for neutron-diffraction enables neutron protein structures to be determined at or near atomic resolutions from crystals with volumes of < 1 mm 3 and unit cell edges of < 150 Å. The beamline features include elliptical focusing mirrors that deliver neutrons into a 2.0 × 3.2 mm 2 focal spot at the sample position, and variable short and long wavelength cutoff optics that provide automated exchange between multiple wavelength configurations. The beamline is equipped with a single-axis goniometer, neutron-sensitive cylindrical image plate detector and room temperature and cryogenic sample environments. This article describes the beamline components, the diffractometer and the data collection and data analysis protocols that are used, and outlines the protein deuteration, crystallization and conventional crystallography capabilities that are available to users at ORNL's neutron facilities. We also present examples of the scientific questions being addressed at this beamline and highlight important findings in enzyme chemistry that have been made possible by IMAGINE.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2019

The Fall Speed Variability of Similarly Sized Ice Particle Aggregates

The terminal velocity ( V t ) of ice hydrometeors is of high importance to atmospheric modeling. V t is governed by the physical characteristics of a hydrometeor, including mass and projected area, as well as environmental conditions. When liquid hydrometeors coalesce to form larger hydrometeors, the resulting hydrometeor can readily be characterized by its spherical or near-spherical shape. For ice hydrometeors, it is more complicated because of the variability of ice shapes possible in the atmosphere as well as the inherent randomness in the aggregation process, which leads to highly variable characteristics. The abundance of atmospheric processes affecting ice particle dimensional characteristics creates potential for highly variable V t for ice particles that are predicted or measured to be of the “same size.” In this article we explore the variability of ice hydrometeor V t both theoretically and through the use of experimental observations. Theoretically, the variability in V t is investigated by analyzing the microphysical characteristics of randomly aggregated hexagonal shapes. The modeled dimensional characteristics are then compared to aircraft probe measurements to constrain the variability in atmospheric ice hydrometeor V t . Results show that the spread in V t can be represented with Gaussian distributions relative to a mean. Variability expressed as the full width at half maximum of the normalized Gaussian probability distribution function is around 20%, with somewhat higher values associated with larger particle sizes and warmer temperatures. Field campaigns where mostly convective clouds were sampled displayed low variability, while Arctic and midlatitude winter campaigns showed broader V t spectra.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Operando X-ray Nanocharacterization of Polycrystalline Thin Film Modules

Non-destructive measurement techniques, with high spatial resolution, capable of correlating composition and structure with device properties, are few and far between. For the case of polycrystalline and inhomogeneous materials, the added challenge is that large sampling areas are necessary in order to have a statistical representation of the specimen under study. For the study of grain cores and grain boundaries in polycrystalline solar absorbers this is of particular importance since their dissimilar behavior and variability throughout the samples makes it difficult to draw conclusions and ultimately optimize the materials and devices. Our approach to use state-of-the-art x-ray microscopy to study full module stacks under operating conditions is unique. Understanding the effects of elemental and charge migration under full encapsulation and operating conditions will allow CIGS and CdTe manufactures and in particular our partners in this proposal to modify materials, stacks, architectures, and processing steps to minimize the performance losses through time.

14 SOLAR ENERGY↗

NASA NTRS1988

A test of synthetic accretion disk spectra using ultraviolet flux distributions of novalike variables

Ultraviolet (UV) fluxes and other data for a sample of nine novalike cataclysmic variables are assembled from the literature. The UV fluxes and colors are compared to spectra of steady state model accretion disks, constructed using either Planck functions or model stellar atmosphere spectra as elementary radiators. Deficiencies are found with both sets of models. The restriction to steady state radial temperature profiles is relaxed for the 'stellar atmosphere' disks, but these generalized models still fail to account simultaneously for the absolute UV flux and the UV color of the observed spectra. The conclusion is that stellar atmosphere models do not reflect the physics of disks. More appropriate models probably can and definitely should be made.

Wade, Richard A.↗

DOE OSTI2024

Machine learning models of intermittent operation of RO wellhead water treatment for salinity reduction and nitrate removal

Machine learning models were developed for intermittent multi-mode operation of a wellhead reverse osmosis water purification and desalination system to predict salt passage, nitrate passage, and permeate flux. The models, based on long short-term memory (LSTM) recurrent neural network (RNN) architecture, included an attention mechanism to increase model performance in proximity of the regulatory limit for nitrate. Training and testing of the models for the Startup, Production, Shutdown and Flushing operational modes were based on operational data (consisting of 22 process variables per data sample) acquired every 2–5 s over a six-month period. The significant sets of model input attributes for the different operational modes were assessed via Spearman ranking correlation, Self-Organizing Map (SOM) analysis and feed forward feature selection (FFFS). Although the variability of nitrate passage, salt passage and permeate flux was significant over the four operational modes, prediction performance for the three outcomes were with R2 and Average Absolute Relative Error (AARE) of 0.78–0.95 and 2.96–6.16 %, respectively. Model updates post membrane elements replacement demonstrated similar levels of prediction accuracy. The study results suggest that there is merit in exploring the utility of multi-mode models for sensor fault detection, data imputation, and for potential use in model-predictive control.

Intermittent RO operation↗

NASA NTRS1987

Determining the rate of forest conversion in Mato Grosso, Brazil, using Landsat MSS and AVHRR data

AVHRR-LAC thermal data and Landsat MSS and TM spectral data were used to estimate the rate of forest clearing in Mato Grosso, Brazil, between 1981 and 1984. The Brazilian state was stratified into forest and nonforest. A list sampling procedure was used in the forest stratum to select Landsat MSS scenes for processing based on estimates of fire activity in the scenes. Fire activity in 1984 was estimated using AVHRR-LAC thermal data. State-wide estimates of forest conversion indicate that between 1981 and 1984, 353,966 ha + or - 77,000 ha (0.4 percent of the state area) were converted per year. No evidence of reforestation was found in this digital sample. The relationship between forest clearing rate (based on MSS-TM analysis) and fire activity (estimated using AVHRR data) was noisy (R-squared = 0.41). The results suggest that AVHRR data may be put to better use as a stratification tool than as a subsidiary variable in list sampling.

Nelson, Ross↗

DOE OSTI2016

Versailles Project on Advanced Materials and Standards Interlaboratory Study on Measuring the Thickness and Chemistry of Nanoparticle Coatings Using XPS and LEIS

We report the results of a VAMAS (Versailles Project on Advanced Materials and Standards) inter-laboratory study on the measurement of the shell thickness and chemistry of nanoparticle coatings. Peptide-coated gold particles were supplied to laboratories in two forms: a colloidal suspension in pure water and; particles dried onto a silicon wafer. Participants prepared and analyzed these samples using either X-ray photoelectron spectroscopy (XPS) or low energy ion scattering (LEIS). Careful data analysis revealed some significant sources of discrepancy, particularly for XPS. Degradation during transportation, storage or sample preparation resulted in a variability in thickness of 53%. The calculation method chosen by XPS participants contributed a variability of 67%. However, variability of 12% was achieved for the samples deposited using a single method and by choosing photoelectron peaks that were not adversely affected by instrumental transmission effects. The study identified a need for more consistency in instrumental transmission functions and relative sensitivity factors, since this contributed a variability of 33%. The results from the LEIS participants were more consistent, with variability of less than 10 % in thickness and this is mostly due to a common method of data analysis. The calculation was performed using a model developed for uniform, flat films and some participants employed a correction factor to account for the sample geometry, which appears warranted based upon a simulation of LEIS data from one of the participants and comparison to the XPS results.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

NASA NTRS1997

Testing the Pairs-Reflection Model with X-Ray Spectral Variability and X-Ray Properties of Complete Samples of Radio-Selected BL Lacertae Objects

This grant was awarded to Dr. C. Megan Urry of the Space Telescope Science Institute in response to two successful ADP proposals to use archival Ginga and Rosat X-ray data for 'Testing the Pairs-Reflection model with X-Ray Spectral Variability' (in collaboration with Paola Grandi, now at the University of Rome) and 'X-Ray Properties of Complete Samples of Radio-Selected BL Lacertae Objects' (in collaboration with then-graduate student Rita Sambruna, now a post-doc at Goddard Space Flight Center). In addition, post-docs Joseph Pesce and Elena Pian, and graduate student Matthew O'Dowd, have worked on several aspects of these projects. The grant was originally awarded on 3/01/94; this report covers the full period, through May 1997. We have completed our project on the X-ray properties of radio-selected BL Lacs.

Urry, C. Megan↗

NASA NTRSDate not supplied

Fusion of Hyperspectral Sounder Products Via Spectral Fingerprinting Methodology

Satellite based measurements of top-of-atmosphere (TOA) spectral radiances in the infrared (IR) region have been in existence for almost two decades and are expected to be continued in the following decades. The data from multiple hyper-spectral IR sounders can therefore be combined to build a long-term data record to further global scale climate trend research. Challenges associated with the fusion of data from different sensors come from the stability and consistency requirement on the climate record. The direct radiance observations from different sounders need to be homogenized by reconciling the differences in calibration, spectral response function (SRF), and spatial-temporal sampling. When geophysical variables derived from radiances measured by different sounders are combined to form long-term climate records, the impacts of any inconsistencies between overlapping measurements on the retrieval must be carefully assessed in order to estimate the uncertainty of the corresponding climate anomalies/trends derived. This paper presents a novel climate fingerprinting methodology and establishes a rigorously-defined inverse relationship that allows us to efficiently evaluate the change in essential climate variables from the change in spectral radiances measured in prescribed spatial and temporal averaging scales. The inverse spectral fingerprinting relationship is constructed based on a unified spectral kernel scheme, providing a direct means for quantifying the potential discontinuity in the derived climate anomalies due to inconsistencies between overlapping measurements. We show in this paper a sample application of using the spectral fingerprinting scheme to derive long-term, global-scale surface temperatures from the Climate Hyperspectral Infrared Radiance Product (CHIRP) and quantify the inter-satellite biases.

Wan Wu↗

NASA NTRS2023

Importance of Internal Variability for Climate Model Assessment

Benchmarking climate model simulations against observations of the climate is core to the process of building realistic climate models and developing accurate future projections. However, in many cases, models do not match historical observations, particularly on regional scales. If there is a mismatch between modeled and observed climate features, should we necessarily conclude that our models are deficient? Using several illustrative examples, we emphasize that internal variability can easily lead to marked differences between the basic features of the model and observed climate, even when decades of model and observed data are available. This can appear as an apparent failure of models to capture regional trends or changes in global teleconnections, or simulation of extreme events. Despite a large body of literature on the impact of internal variability on climate, this acknowledgment has not yet penetrated many model evaluation activities, particularly for regional climate. We emphasize that using a single or small ensemble of simulations to conclude that a climate model is in error can lead to premature conclusions on model fidelity. A large ensemble of multidecadal simulations is therefore needed to properly sample internal climate variability in order to robustly identify model deficiencies and convincingly demonstrate progress between generations of climate models.

Climate and Earth system modelling↗

DOE OSTI2022

Identification of Distribution of Elastic Constants of SiC/SiC Braided Tubes

There has been considerable interest in chemical vapor infiltration (CVI) manufactured silicon carbide fiber and silicon carbide matrix (SiCf/SiCm) composite tubes due to their superior mechanical properties. There are many parameters in the manufacturing of SiCf/SiCm composite tubes such as elastic constants of constituent SiC fiber and SiC matrix, braiding angle, porosity, and others whose values vary over a range. A sensitivity analysis will be carried out to determine the dominant parameters among the abovementioned ones. We intend to determine the variability in elastic constants of SiCf/SiCm composite tubes considering the variability in dominant parameters. A chosen number of combinations of dominant variables will be sampled through Latin hypercube sampling (LHS) method. The elastic constants of composite tube namely Young's moduli in circumferential and longitudinal direction, Poisson's ratio and shear modulus will be calculated at sampled points through finite element (FE) analysis. A polynomial response surface (PRS) will be built for each of the elastic constants to be used a surrogate to FE analysis. once the predictive accuracy of PRS is verified at the validation set of data points, the PRS will be invoked 105 times in Monte Carlo simulations (MCS). The variability can be calculated based on MCS-generated data which will be presented at the conference.

42 ENGINEERING↗

NASA NTRS1989

Sampling characteristics of satellite orbits

The irregular space-time sampling of any finite region by an orbiting satellite raises difficult questions as to which frequencies and wavenumbers can be determined and which will alias into others. Conventional sampling theorems must be extended to account for both irregular data distributions and observational noise - the sampling irregularity making the system much more susceptible to noise than in regularly sampled cases. The problem is formulated here in terms of least-squares and applied to spacecraft in 10-day and 17-day repeating orbits. The 'diamond-pattern' laid down spatially in such repeating orbits means that either repeat period adequately samples the spatial variables, but the slow overall temporal coverage in the 17-day pattern leads to much greater uncertainty than in the shorter repeat cycle. The result is not definitive and it is not concluded that a 10-day orbit repeat is the most appropriate one. A major conclusion, however, is that different orbital choices have potentially quite different sampling characteristics which need to be analyzed in terms of the spectral characteristics of the moving sea surface.

Wunsch, Carl↗

NASA NTRS1992

Automated in situ observations of upper ocean biogeochemistry, bio-optics, and physics and their potential use for global studies

The processes controlling the flux of carbon in the upper ocean have dynamic ranges in space and time of at least nine orders of magnitude. These processes depend on a broad suite of inter-related biogeochemical, bio-optical, and physical variables. These variables should be sampled on scales matching the relevant phenomena. Traditional ship-based sampling, while critical for detailed and more comprehensive observations, can span only limited portions of these ranges because of logistical and financial constraints. Further, remote observations from satellite platforms enable broad horizontal coverage which is restricted to the upper few meters of the ocean. For these main reasons, automated subsurface measurement systems are important for the fulfillment of research goals related to the regional and global estimation and modeling of time varying biogeochemical fluxes. Within the past few years, new sensors and systems capable of autonomously measuring several of the critical variables have been developed. The platforms for deploying these systems now include moorings and drifters and it is likely that autonomous underwater vehicles (AUV's) will become available for use in the future. Each of these platforms satisfies particular sampling needs and can be used to complement both shipboard and satellite observations. In the present review, (1) sampling considerations will be summarized, (2) examples of data obtained from some of the existing automated in situ sampling systems will be highlighted, (3) future sensors and systems will be discussed, (4) data management issues for present and future automated systems will be considered, and (5) the status of near real-time data telemetry will be outlined. Finally, we wish to make it clear at the outset that the perspectives presented here are those of the authors and are not intended to represent those of the United States JGOFS program, the International JGOFS program, NOAA's C&GC program, or other global ocean programs.

Dickey, Tommy D.↗

NASA NTRS2004

Visualizing Time-Varying Distribution Data in EOS Application

In this research, we have developed several novel visualization methods for spatial probability density function data. Our focus has been on 2D spatial datasets, where each pixel is a random variable, and has multiple samples which are the results of experiments on that random variable. We developed novel clustering algorithms as a means to reduce the information contained in these datasets; and investigated different ways of interpreting and clustering the data.

Shen, Han-Wei↗

NASA NTRS2008

Test Population Selection from Weibull-Based, Monte Carlo Simulations of Fatigue Life

Fatigue life is probabilistic and not deterministic. Experimentally establishing the fatigue life of materials, components, and systems is both time consuming and costly. As a result, conclusions regarding fatigue life are often inferred from a statistically insufficient number of physical tests. A proposed methodology for comparing life results as a function of variability due to Weibull parameters, variability between successive trials, and variability due to size of the experimental population is presented. Using Monte Carlo simulation of randomly selected lives from a large Weibull distribution, the variation in the L10 fatigue life of aluminum alloy AL6061 rotating rod fatigue tests was determined as a function of population size. These results were compared to the L10 fatigue lives of small (10 each) populations from AL2024, AL7075 and AL6061. For aluminum alloy AL6061, a simple algebraic relationship was established for the upper and lower L10 fatigue life limits as a function of the number of specimens failed. For most engineering applications where less than 30 percent variability can be tolerated in the maximum and minimum values, at least 30 to 35 test samples are necessary. The variability of test results based on small sample sizes can be greater than actual differences, if any, that exists between materials and can result in erroneous conclusions. The fatigue life of AL2024 is statistically longer than AL6061 and AL7075. However, there is no statistical difference between the fatigue lives of AL6061 and AL7075 even though AL7075 had a fatigue life 30 percent greater than AL6061.

Vlcek, Brian L.↗

NASA NTRS2012

Test Population Selection from Weibull-Based, Monte Carlo Simulations of Fatigue Life

Vlcek, Brian L.↗

DOE OSTI2019

Characterization of Covetic Materials for Process Control. Final CRADA report

GDC Industries LLC has been performing process research on covetic materials since its formation in February 2015. With assistance from DOE and the Air Force via SBIR projects, GDC focused on the enhancement of aluminum alloys to covetics to replicate a previously reported electrical conductivity of about 67% IACS (International Annealed Copper Standard). GDC has established a joint development agreement with General Cable Corporation, wherein General Cable agreed to perform numerous extrusions of as cast covetics and subsequent tensile and electrical conductivity tests on the resultant wire. Covetics conversion was proven but the significant improvement is yet to be replicated. To control the experiments towards enhanced process control, a series of designed experiments was created by an expert in process control from the automotive industry. Six process variables were identified and a designed experiment matrix requiring 18 independent conversions was created at GDC. The result of those designed experiments has now allowed GDC to focus on two process variables, namely, residence time and DC current in the conversions with the other four variable held constant. While this work is useful in replicating the earlier enhancements, GDC feels it will not be sufficient for the necessary process knowhow for scale up required by industry as GDC still does not have a direct correlation of the process variables to the actual carbon in the finished covetics. Since 2015, GDC has been aware of the capabilities existing at Argonne National Laboratory for performing carbon analysis that exceeds the precision commonly available to Industry. GDC and ANL submitted a proposal in response to the DOE-EERE – Small Business Vouchers Pliot Program announcement and the proposal was selected for funding. GDC will melt-process covetic aluminum samples following their design of experiment criteria and have the as-casted samples extruded by their partner, General Cable. Argonne will measure the conductivity, analyze carbon content, perform X-ray diffraction, and examine the microstructural features of the samples. Careful process variable measurements will be recorded by each party such that correlations can be developed indicating process parameters that yield the best carbon concentration in covetics.

36 MATERIALS SCIENCE↗