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At least 289 records · Page 16

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DOE OSTI2022

Bulk and Spatially Resolved Extracellular Metabolome of Free-Living Nitrogen Fixation

Free-living nitrogen-fixing bacteria contribute significantly to terrestrial nitrogen availability; however, the forms of nitrogen contributed by this process are poorly understood. This is in part because of inherent challenges to studying soil microorganisms in situ , such as vast differences in scale between microorganism and ecosystem and complexities of the soil system (e.g., opacity, chemical complexity).

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

SuperNu Version 4.x

We seek to release SuperNu, Version 4.x, as a continuation of development for the open source SuperNu software. The SuperNu, Version 3.x Monte Carlo radiative transfer code for astrophysical transients was released with GPLv3 copyright, asserted by LANL in 2015. For the next release we have features planned for development , including: opacity implementation (including non-local thermodynamic equilibrium effects), generalized source implementation (e.g. for emulating shock heating in Type II supernovae), 3T (electron, ion, radiation) internal energy update, special relativity corrections through O(v^2/c^2), light polarization (e.g. for comparison to spectroplarimetry observations of supernovae and kilonovae), and infrastructure features (checkpoint and restart of simulations, and tools including setup and Slurm batch scripts and simulation post-processing/analysis scripts). These features are intended to improve the fidelity and/or better understand uncertainty in supernova and kilonova light curve calculations.

Wollaeger, Ryan↗

DOE OSTI2021

Multiscale X-ray phase contrast imaging of human cartilage for investigating osteoarthritis formation

The evolution of cartilage degeneration is still not fully understood, partly due to its thinness, low radio-opacity and therefore lack of adequately resolving imaging techniques. X-ray phase-contrast imaging (X-PCI) offers increased sensitivity with respect to standard radiography and CT allowing an enhanced visibility of adjoining, low density structures with an almost histological image resolution. This study examined the feasibility of X-PCI for high-resolution (sub-) micrometer analysis of different stages in tissue degeneration of human cartilage samples and compare it to histology and transmission electron microscopy. Ten 10%-formalin preserved healthy and moderately degenerated osteochondral samples, post-mortem extracted from human knee joints, were examined using four different X-PCI tomographic set-ups using synchrotron radiation the European Synchrotron Radiation Facility (France) and the Swiss Light Source (Switzerland). Volumetric datasets were acquired with voxel sizes between 0.7 × 0.7 × 0.7 and 0.1 × 0.1 × 0.1 µm 3 . Data were reconstructed by a filtered back-projection algorithm, post-processed by ImageJ, the WEKA machine learning pixel classification tool and VGStudio max. For correlation, osteochondral samples were processed for histology and transmission electron microscopy. X-PCI provides a three-dimensional visualization of healthy and moderately degenerated cartilage samples down to a (sub-)cellular level with good correlation to histologic and transmission electron microscopy images. X-PCI is able to resolve the three layers and the architectural organization of cartilage including changes in chondrocyte cell morphology, chondrocyte subgroup distribution and (re-)organization as well as its subtle matrix structures. X-PCI captures comprehensive cartilage tissue transformation in its environment and might serve as a tissue-preserving, staining-free and volumetric virtual histology tool for examining and chronicling cartilage behavior in basic research/laboratory experiments of cartilage disease evolution.

3D analysis↗

DOE OSTI2021

Particle velocity measurement within a free-falling particle curtain using microscopic shadow velocimetry

We report an optical method for particle velocity measurement that is suitable for the measurement of particle velocities within dense particle-laden flows with high spatial resolution. The technique is based on particle shadow velocimetry with the use of a long-distance microscopic lens for images collection. The narrow depth of field of the lens allows particles within the focal plane to have much higher pattern intensities than those outside it on the collected images. Data processing was then employed to remove particles from outside the focal plane based on the gradient of the signal and a threshold. Following this, particle velocity was calculated from two successive images in the usual way. The technique was successfully demonstrated in a free-falling particle curtain with volume fractions in the four-way coupling regime of near-spherical micro-particles falling under gravity. The method was successfully employed to measure the transverse velocity profile through the curtain, which is the first time that such a measurement has been performed. Other highly-fidelity experimental data, which is also well suited to model development and validation, include the particle mass flow rate, curtain thickness and opacity.

Han, Shipu (ORCID:0000000278545882)↗

DOE OSTI2024

Monitoring the impact of confinement on hyphal penetration and fungal behavior

Through their expansive mycelium network, soil fungi alter the physical arrangement and chemical composition of their local environment. This can significantly impact bacterial distribution and nutrient transport and can play a dramatic role in shaping the rhizosphere around a developing plant. However, direct observation and quantitation of such behaviors is extremely difficult due to the opacity and complex porosity of the soil microenvironment. In this study, we demonstrate the development and use of an engineered microhabitat to visualize fungal growth in response to varied levels of confinement. Microfluidics were fabricated using photolithography and conventional soft lithography, assembled onto glass slides, and prepared to accommodate fungal cultures. Selected fungal strains across three phyla (Ascomycota: Morchella sextalata , Fusarium falciforme ; Mucoromycota: Linnemannia elongata , Podila minutissima , Benniella ; Basidiomycota: Laccaria bicolor , and Serendipita sp.) were cultured within microhabitats and imaged using time-lapse microscopy to visualize development at the mycelial level. Fungal hyphae of each strain were imaged as they penetrated through microchannels with well-defined pore dimensions. The hyphal penetration rates through the microchannels were quantified via image analysis. Other behaviors, including differences in the degree of branching, peer movement, and tip strength were also recorded for each strain. Our results provide a repeatable and easy-to-use approach for culturing fungi within a microfluidics platform and for visualizing the impact of confinement on hyphal growth and other fungal behaviors pertinent to their remodeling of the underground environment.

Guo, Yi-Syuan (ORCID:0000000340142225)↗

DOE OSTI2023

Radiative cooling textiles using industry-standard particle-free nonporous micro-structured fibers

Abstract Thermal radiation is a major dissipative pathway for heat generated by the human body and offers a significant thermoregulation mechanism over a wide range of conditions. We could use this in garment design to enhance personal cooling, which can improve the wearing comfort of garments or even result in energy savings in buildings. At present, however, radiative cooling has received insufficient attention in commercial design and production of textiles for wearable garments. Textiles that efficiently transmit the radiative heat were recently demonstrated, but either do not utilize standard weaving and knitting processes for wearable garments or require substantial process modifications. Here, we demonstrate the design and implementation of large-scale radiative cooling textiles for localized cooling management and enhanced thermal comfort using industry-standard particle-free nonporous micro-structured fibers that are fully compatible with standard textile materials and production methods. The micro-structured fibers, yarns and fabrics are part of a hierarchical photonic structure design that renders the textiles highly infrared transparent (up to > 0.8) while assuring visual opacity (up to 0.99). We design radiative cooling textiles with first-principles electromagnetic methods and fabricate them using commercial textile materials and formation facilities. Our “fabless” approach is confirmed by very good quantitative agreement between design and measurements. The resulting fabrics exhibit wearability properties expected of wearable textiles, and lower skin temperature by ≥ 3 °C compared to conventional textiles, which offers the potential for > 30 % energy savings in buildings and increases wearing comfort by significantly reducing the reliance on latent heat dissipation for thermoregulation.

Catrysse, Peter B.↗

DOE OSTI2020

Atomic kinetics of laboratory photoionized plasmas relevant to astrophysics. Final report

The major goal of this project was to study the atomic and radiation physics of photoionized plasmas driven by a broadband x-ray flux and its impact on plasma x-ray heating and ionization, emissivity and opacity, and radiation-hydrodynamics. This problem is relevant to the physics of accretion disks surrounding black holes, x-ray binaries, and active galactic nuclei in astrophysics. In addition, it is also important for understanding non-equilibrium laboratory plasmas driven by a distribution of photons. To this end, and motivated by previous and ongoing gas-cell experiments performed by the PI at the Z facility of Sandia National Laboratories, we developed a new experimental platform at the 1MA Zebra pulsed power accelerator of the University of Nevada, Reno based on using a gas jet produced by a supersonic nozzle. The gas jet is turned into a photoionized plasma driven by the x- ray flux from a wire-array z-pinch. Establishing this new experimental platform at Zebra was a major goal of this project. In addition, we have also dedicated effort to continue complementary experiments at the Z facility using the gas-cell photoionized plasma set up with support from the Fundamental Science Program at Z as well as to perform data processing and analysis, and theory and modeling simulations, including electron kinetics and radiation-hydrodynamics. Since we seek to test and establish what physics models are needed to describe photoionized plasma guided by experimental observation, these complementary experimental efforts were central to achieving the goals of this project.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2020

ElectroMon Geometry Considerations: Simulations of Electron Transport to a Diamond-Based Detector

Particle-in-Cell simulations were performed to investigate the effects of electrode bias and pitch on the expected number of electrons arriving at a diamond-based detector at a set of relevant incident electron energies for electron cloud monitoring. Results of these simulations indicate that the pitch of the electrodes directly impacts the number of incident electrons based on complete opacity of the electrodes to the electrons; image charge does not play a role at any relevant electron energy. Positive bias on the incident electrodes directly increases the energy of the incident electrons, while negative bias reduces the energy and completely repels incoming electrons of energies lower than the applied bias. These results are intended to be used as input parameters for a solid-state simulation which will determine the collection efficiency of the electron-hole pairs produced within the diamond as a function of position and energy.

43 PARTICLE ACCELERATORS↗

DOE OSTI2021

EOSPAC User’s Manual: V.6.5

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2021

Improvements of SAM Heat Transfer Models for Molten Salt-Cooled Pebble Bed Reactors

To support the development and utilization of the SAM code for molten salt-cooled pebble bed reactor safety analyses and licensing, selected improvements were made to the one-dimensional system-level heat transfer modeling in SAM with the goal of better capturing heat transfer phenomena specific to these designs. In consideration of molten salt as a coolant, new models were introduced to capture the enhanced radiative heat transfer that must be considered at the higher working temperatures. Radiative heat transfer is handled not only between two structural surfaces, but also in combination between the surfaces and the molten salt fluid, which has a higher opacity and absorption of radiative heat as compared to water. Several examples of analytical verification of the new radiative heat transfer methods are included in this report. Additionally, convective heat transfer correlations were selected from literature and included in SAM to account for the enhanced heat transfer expected in pebble bed geometry flows. These correlations are verified and demonstrated in the present work with a reference FHR example.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2021

White paper on NIF Discovery Science and frontier regimes of HEDP

Over the past two decades, experimental capabilities at high energy density (HED) facilities such as the National Ignition Facility (NIF), Omega, and Omega EP lasers, and the Z pulsed power facility are able to make precision measurements of fundamental quantities such as equations of state (EOS), material phase, opacities, and ionization levels Z. Flow based quantities are also being studied, such as hydrodynamic instabilities, evolution into turbulence, turbulent dynamo magnetic field amplification, magnetic reconnection; plasma instabilities, plasma wakefield particle acceleration; and relativistic plasma phenomena, such as (e + ,e - ) pair creation. Experimental regimes can be created that reproduce conditions relevant to planetary and exoplanet interiors, stellar interiors, the interiors of brown dwarfs, and the envelope conditions of white dwarf stars. Diagnostic techniques have been developed hand in hand with these new experimental regimes that can be accessed. In this white paper, a brief summary of key experimental achievements from the NIF Discovery Science (basic science) program will be presented; followed by a discussion of current challenges, needs, and potential paths forward.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2021

Progress report on analytic and numerical studies of x-ray-induced impulse

In a variety of high-energy-density (HED) systems, x-rays of a given energy are used to generate shockwaves, bulk motion, and impulse in materials. As radiation energy is deposited within the material, the material is heated. The number of photons of a certain wavelength absorbed is determined by the spectral intensity of the radiation and the material’s opacity evaluated at that wavelength. This heating results in a pressure increase dictated by the material’s equation of state. Depending on the intensity of the absorbed radiation, it may also cause the material to change phase into a liquid, gas, or plasma. The increased pressure drives the heated surface layer to blow off, imparting impulse and sending a compressive wave into the bulk of the material. Additionally, the compression wave interacts with the solid boundary of the material, resulting in a tensile wave that may cause the material to spall. The impulse generated by the deposition of x-ray energy within the sample can be modeled using purely analytical methods, e.g. the Bethe, Bade, Averell, and Yost (BBAY) model. However, the blow-off process is rather complicated, and proper modeling efforts must account for material ejected by spallation, vaporization, jetting, and plasma ablation. For this reason, analytical models have an unclosed term describing the final energy of the blown-off material Ef(z). Prior modeling efforts have arbitrarily fixed this at some value or modeled it using a limiting set of thermodynamic assumptions. The work we are currently performing uses validated simulations using sophisticated photon transport, equation of state, and strength models/data to provide a fit for Ef(z) that is useful for predictive calculation of impulse. We will apply our methodology and show results for different materials and x-ray sources. This work is particularly useful for the design of experiments studying x-ray impulse generation. The present report is outlined as follows. Section 1.2 describes a series of HED experiments investigating x-ray-generated impulse in materials. Section 1.3 describes the computational approach we employ in this study, and presents validation results against the aforementioned experiments. Section 1.4 introduces analytical models for impulse generation, as well as our method for utilizing impulse from simulations to close the models. We discuss the concept of impulse-spectrum sensitivity, it’s application to uncertainty quantification, and derive a very useful analytical expression for it in 1.5. We then summarize recent progress in this project and discuss future work in section 1.6.

36 MATERIALS SCIENCE↗

DOE OSTI2022

The Influence of Environment on Post-Detonation Chemistry and Debris Formation (Abbreviated Final Report: 20-SI-006)

Predicting, responding to, or interpreting the chemical record preserved in debris derived from nuclear events can be challenging due to chemical fractionation. Chemical fractionation is where different species of the evolving radionuclide inventory segregate and/or are lost from the system over the timescales of debris formation. Both historic data and recent research suggest that the interaction and character of the local environment may exert controls on chemical fractionation by influencing the cooling and evolution of the associated fireball as well as the composition of the vapor term and resultant speciation. Prior to this work, an integrated platform permitting dynamic and concurrent consideration of physical and chemical evolution of early time post-detonation event environments did not exist. Our work merged historic data and experimental approaches to support development of a computational framework able to simulate fundamental processes (e.g., entrainment of local environment, oxidation chemistry, and cooling time scales) that may perturb the radionuclide inventory captured in post-detonation debris. Work with historic debris confirmed that entrained environmental material affect debris composition, structure, and radionuclide incorporation. Complementary work utilizing a readily controllable and tunable benchtop setup (a plasma flow reactor) simulated the late cooling of a nuclear fireball (e.g., T < 6000 K) and bounded the sensitivity of actinide speciation and particle size distribution to variations in oxygen concentration and cooling rates. Concurrent laser ablation and laser heating experiments were used to investigate the chemistry and physics of processes occurring in vaporized and/or rapidly heated actinides and other elements in the presence of oxygen. A more computationally efficient microphysical model was developed for predicting and evolving size distributions of particles forming from mixed vapor terms and simulating particle formation processes under a variety of extreme conditions. Continued study of historic nuclear event film confirmed that shockwave data and physics codes agree to within the uncertainty of the data. Good agreement was achieved for thermal emission from an airburst, however the paucity of low-temperature molecular opacity data for mixtures of air, bomb debris, entrained dirt, and water vapor complicate agreement for more elaborate scenarios. A multiphysics code (ALE3D) was modified to bring the necessary physics and chemistry, including these new data and insights, onto a single platform. Code development included improved initialization of large physical systems, modernization of chemistry capabilities, and modifications to enable inclusion of particle transport.

07 ISOTOPE AND RADIATION SOURCES↗

DOE OSTI2025

EOSPAC User's Manual: Version 6.5 Second Edition (Rev. 3)

The EOSPAC utility package is a collection of interface routines, which can be used to access the SESAME data library and perform various data adjustments and interpolations on the SESAME data. The SESAME data library contains both thermodynamic (e.g., equation of state) and transport coefficients (e.g., opacity and conductivity). Note, for simplicity, the term EOS (equation of state) used herein includes both thermodynamic variables and transport coefficients. The EOSPAC utility package is designed to be used by physics codes (henceforth ”host codes”) written in multiple languages and on multiple platforms. The remainder of this manual is organized into several sections. Chapter 2 discusses conventions such as data organization and routine names. Chapter 3 provides a general overview of basic theory and models implemented within EOSPAC. Chapter 4 provides a general overview of how to use the EOSPAC interface library. Chapters 5 to 7 describe the public interfaces of EOSPAC in detail. Chapter 8 provides a brief introduction to some related tools, which may be of use to the user. Chapter 9 provides details related to some selected numerical features of EOSPAC. Chapter 10 gives examples for using the interface routines described in chapters 5 to 7. Chapter 11 provides technical support contact information. Chapter 12 contains a brief set of acknowledgments. Chapter 13 contains a list of referenced documents. Finally, chapter 14 lists the “table types: mnemonic conventions”, “table types: grouped by category, sorted by name”, “table types: eospac version 5 cross reference”, “options: setup phase”, “data information parameters”, “meta-data information parameters”, “options: interpolation phase”, and the “error codes”.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2023

Fundamental aspects of Spacetime and Quantum Fields

The proposal contained two goals: firstly, placing fundamental bound on thermalization in Quantum Field Theories (QFTs) and, secondly, developing our understanding of emergent spacetime from matrices through concrete models. Since the previous reporting period, in collaboration with Sean Hartnoll we have continued our study of entanglement edge modes in matrix quantum mechanics (MQM). This has resulted in two papers. The first applies our construction for the Matrix Quantum Hall system first to fuzzy sphere states known to correspond to stringy M2-branes in MQM. Entanglement in these states using machine learning methods have also been studied by Sean Hartnoll and Xizhi Han in previous work done under this grant. Our construction builds on this work, and further demonstrates how area laws on fuzzy geometries emerge from strongly coupled systems. The second paper generalizes this construction to all noncommutative geometries with curvature much larger than the noncommutativity parameter. We demonstrate that despite UV/IR mixing effects, the structure of entanglement edge mode irreducible representations is determined by the boundary area of subsystems. On manifolds without global symmetries, we have demonstrated that nonlocal effects inherent to noncommutative geometries resum into a change of frame of the metric structure, similar to the change from string frame to Einstein frame for entanglement entropies calculated in string theory. These advancements lay the groundwork for future progress in the understanding of emergent geometry from large-N theories. Using these techniques, we are currently working on applying our methods to noncom mutative geometries whose construction is not so well understood, such as the fuzzy 5-sphere. Despite their opacity these objects are quite important, as string physics in the bulk of holographic systems bears many features of noncommutative geometry. We have also laid the groundwork of applying our methods to tensor networks, one of the most powerful models for understanding how geometry emerges from entanglement.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2024

X-ray Spectral-Timing Pipeline to Investigate an Electron-Scattering Time Delay in Black Hole Accretion Disks [Slides]

The soft lag in black hole X-ray binaries (BHXRBs) refers to the time delay for the soft, thermal disk to respond to hard, variable coronal irradiation. This time lag increases from less than 1 ms to ~10 ms during the hard-to-soft state transition. Interpretations of soft lag trends appeal to changing the light-travel path via an evolving coronal height and/or inner accretion disk radius. Both interpretations neglect a time delay contribution from the reprocessing of irradiation inside the disk, where electron-scattering opacity dominates. A new theory considering a thermalization (electron scattering) time delay in the disk can plausibly produce ~10 ms time delays in the intermediate state. To further investigate the impacts of adding a time delay component from electron scattering in the disk, we are creating a spectral-timing pipeline that can analyze NICER (Neutron Star Interior Composition Explorer) X-ray observations of BHXRBs in outburst. In the near future, we will apply this spectral timing pipeline to develop a reverberation lag model from simulations that include the thermalization time delay from electron scattering in the disk.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

Physics-assisted Latent Space Dynamics Learning for Stiff Collisional-radiative Models

Collisional-radiative (CR) models describe the atomic processes in a plasma by tracking the population density in the ground and excited states for each charge state of the atom/ion. These models predict important plasma properties such as charge state distributions and radiative emissivity and opacity. Accurate descriptions of the CR balance of the plasma are essential in fusion whole device modeling, especially when significant impurities are introduced into the plasmas. In an integrated fusion plasma and CR simulation, a CR model, which is a high-dimensional stiff ODE, needs to be solved on each grid point in the configuration space, and can overwhelm the overall computational cost. In this work, we propose a machine-learning-based method that discovers a latent space and learns its corresponding latent dynamics, which can capture the essential physics to make accurate predictions at much lower online computational cost. The proposed approach is physics-assisted, due to its combination of a physical latent space and a data-driven latent space. It has been demonstrated that the proposed architecture can predict both the full-order CR dynamics and a physical quantity of interest accurately.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2025

Characterizing falling particle curtain receivers at commercially relevant scales: Research Performance Progress Report (RPPR-1)

Sandia will construct a cold flow receiver test platform in order to characterize falling particle curtain receivers at commercially relevant scales. While Sandia has extensive experience in R&D of falling particle curtain receivers, most have been at pilot scale and smaller - on the order of 1 MW th with characteristic dimensions of nominally 1-2 m to adequately collect solar energy from the heliostat field at the National Solar Thermal Test Facility (NSTTF). However, scaling up receivers to commercially relevant scales (25 MW th and above) will require a thorough understanding of particle curtain dynamics at larger scales, especially longer drop heights, for design certainty. The goal of this project will be to construct a cold falling particle curtain test rig capable of simulating particle characteristics that are expected in a commercial scale CSP plant, namely the drop height, curtain thickness, and particle mass flow rate (normalized by length of curtain). This will enable data collection on curtain opacity and spread, both of which are correlated to receiver efficiency and reliable construction, for commercially relevant scales. It will also permit validation of numerical models that will enable detailed receiver characterization and design past currently validated scales.

14 SOLAR ENERGY↗