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DOE OSTI2020

Benchmark Dose Analysis of DNA Damage Biomarker Responses Provides Compound Potency and Adverse Outcome Pathway Information for the Topoisomerase II Inhibitor Class of Compounds

Genetic toxicology data have traditionally been utilized for hazard identification to provide a binary call for a compound's risk. Recent advances in the scientific field, especially with the development of high‐throughput methods to quantify DNA damage, have influenced a change of approach in genotoxicity assessment. The in vitro MultiFlow® DNA Damage Assay is one such method which multiplexes γH2AX, p53, phospho‐histone H3 biomarkers into a single‐flow cytometric analysis (Bryce et al., [2016]: Environ Mol Mutagen 57:546–558). This assay was used to study human TK6 cells exposed to each of eight topoisomerase II poisons for 4 and 24 hr. Using PROAST v65.5, the Benchmark Dose approach was applied to the resulting flow cytometric datasets. With “compound” serving as covariate, all eight compounds were combined into a single analysis, per time point and endpoint. The resulting 90% confidence intervals, plotted in Log scale, were considered as the potency rank for the eight compounds. The in vitro MultiFlow data showed a maximum confidence interval span of 1Log, which indicates data of good quality. Patterns observed in the compound potency rank were scrutinized by using the expert rule‐based software program Derek Nexus, developed by Lhasa Limited. Compound sub‐classification and structural alerts were considered contributory to the potencies observed for the topoisomerase II poisons studied herein. The Topo II poison Adverse Outcome Pathway was evaluated with MultiFlow endpoints serving as Key Events. The step‐wise approach described herein can be considered as a foundation for risk assessment of compounds within a specific mode of action of interest. Environ. Mol. Mutagen. 2020. © 2020 Wiley Periodicals, Inc.

Wheeldon, Ryan P.↗

DOE OSTI2021

Subleading corrections to the S 3 free energy of necklace quiver theories dual to massive IIA

We investigate the S 3 free energy of N = 3 Chern-Simons-matter quiver gauge theories with gauge group U(N) r (r ≥ 2) where the sum of Chern-Simons levels does not vanish, beyond the leading order in the large-N limit. We take two different approaches to explore the sub-leading structures of the free energy. First we evaluate the matrix integral for the partition function in the ’t Hooft limit using a saddle point approximation. Second we use an ideal Fermi-gas model to compute the same partition function, but in the limit of fixed Chern-Simons levels. The resulting expressions for the free energy F = – log Z are then compared in the overlapping parameter regime. The Fermi-gas approach also hints at a universal 1/6 log N correction to the free energy. Since the quiver gauge theories we consider are dual to massive Type IIA theory, we expect the sub-leading correction of the planar free energy in the large ’t Hooft parameter limit to match higher-derivative corrections to the tree-level holographic dual free energy, which have not yet been fully investigated.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NASA NTRS1985

The form of Newtonian cooling in atmospheric tidal theory

The analytical results of Zurek (1986) are applied to compare the vertical-structure equations obtained by Dickinson and Geller (1968) and Lindzen and McKenzie (1967) in solving the classical tidal equations for planetary atmospheres when Newtonian cooling (NC) is included as part of diabatic tidal forcing. The two diabatic forcings are found to be different when the basic state temperature varies with height, and it is recommended that a log-pressure NC formulation be used whenever temperature is made a function of pressure in the radiative-damping calculation. Scaling arguments are presented to show that the choice of NC formulation has significant effects only in cases where the radiative time constants are short (such as the thin CO2 atmosphere of Mars). Numerical computations for that case indicate a difference of 20 percent in amplitude and 15 deg in phase for the (probably meteorologically significant) 4.1-d wavenumber-one Rossby tidal mode.

Zurek, Richard W.↗

NASA NTRS1979

Large impact basins on Mercury and relative crater production rates

A search for impact basins on Mercury having diameters greater than 200 km revealed evidence for 40 such structures on the 47% of Mercury mapped at sufficient resolution by Mariner 10. This is similar to the number (35) found by Schaber et al. (1977), although there is disagreement in the details of both diameters (for basins observed by them and by the authors) and in the existence of individual basins. The differences are described in detail. A log (cumulative number/unit area)-log (diameter) plot for mercurian basins has a least squares slope of -2; basins show somewhat less scatter about this line than do the Schaber et al. basins. Mercury has (in cumulative number/unit area) only 37% as many basins as does the moon over the entire range of diameters greater than 300 km. If both the moon and Mercury have had similar preservation times for craters and if common populations of impactors are involved, then Mars-crossers may have been a dominant contribution to the basin-forming objects.

Frey, H.↗

DOE OSTI2026

Enhanced matter power spectrum from axion kination after Big Bang nucleosynthesis

Despite stringent constraints from Big Bang Nucleosynthesis (BBN) and cosmic microwave background (CMB) observations, it is still possible for well-motivated particle physics models to substantially alter the cosmic expansion history between BBN and recombination. In this work we consider two different axion models that can realize a period of first matter domination, then kination, in this epoch. We perform fits to both primordial element abundances as well as CMB data and determine that up to a decade of late axion domination is allowed by these probes of the early universe. We establish the implications of late axion domination for the matter power spectrum on the scales 1/Mpc ≲ k ≲ 10 3 /Mpc. Our 'log' model predicts a relatively modest bump-like feature together with a small suppression relative to the standard ΛCDM predictions on either side of the enhancement. Our 'two-field' model predicts a larger, plateau-like feature that realizes enhancements to the matter power spectrum of up to two orders of magnitude. These features have interesting implications for structure formation at the forefront of current detection capabilities.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1979

VLA observations of stellar planetary nebulae

Coordinates, dimensions, 4885-MHz flux densities, and brightness temperatures of K3-2, NGC 6833, Ps 1, II 5117, Me 2-2, Hb 12, Vy 1-1, and M1-5 are reported. In two other cases, H3-29 and H3-75, confused extended structure was detected in which the nebula could not be identified with certainty. He 2-467, M1-2, and Peterson's H-alpha object in M15 were also included in the observations but not detected with an upper limit of less than 10 mJy. The observations are compared with some of the previous optical and radio data, such as log S(H-beta). Distances are computed from the present data with standard assumptions. Corresponding linear radii range below 0.1 pc, among the smallest in previous distributions of radius.

Johnson, H. M.↗

NASA NTRS1992

DECONV-TOOL: An IDL based deconvolution software package

There are a variety of algorithms for deconvolution of blurred images, each having its own criteria or statistic to be optimized in order to estimate the original image data. Using the Interactive Data Language (IDL), we have implemented the Maximum Likelihood, Maximum Entropy, Maximum Residual Likelihood, and sigma-CLEAN algorithms in a unified environment called DeConv_Tool. Most of the algorithms have as their goal the optimization of statistics such as standard deviation and mean of residuals. Shannon entropy, log-likelihood, and chi-square of the residual auto-correlation are computed by DeConv_Tool for the purpose of determining the performance and convergence of any particular method and comparisons between methods. DeConv_Tool allows interactive monitoring of the statistics and the deconvolved image during computation. The final results, and optionally, the intermediate results, are stored in a structure convenient for comparison between methods and review of the deconvolution computation. The routines comprising DeConv_Tool are available via anonymous FTP through the IDL Astronomy User's Library.

Varosi, F.↗

DOE OSTI2026

Terrestrial laser scanning data (Levels 0 and 1) for Pasoh, Malaysia, Sep 2024

This data package contains data from terrestrial laser scanning (TLS) at the Pasoh Forest Reserve, Malaysia. The Pasoh Forest Reserve is a facility of the Forest Research Institute Malaysia, and contains evergreen lowland dipterocarp forest. The Next-Generation Ecosystem Experiments Tropics (NGEE-Tropics) study areas at Pasoh were established to study how different species respond to climatic variation and soil water availability. Two study areas were chosen representing different topography and species. The TLS data archived here were collected to provide detailed, three-dimensional information about forest structure. Specifically, data were collected to allow tree-level characterization of woody structure and leaf area for 12 focal trees with FloraPulse and sap flux sensors, facilitating estimation of woody biomass and leaf area to allow upscaling of water content and transpiration data to the tree-level. Scan positions were not selected to provide consistent data for non-focal trees with the study areas. This data package contains the following data: - High-level files document further details of the campaign and data package: 1_CampaignSummary.csv provides details about the campaign and study site, 2_ScanAreasDetail.csv provides details about each separate scan area (groups of scans post-processed into a single point cloud), 3_TerrestrialLidarSensor.csv provides further technical details about the Riegl VZ-400i TLS sensor, TLS_CSV_dd.csv is a CSV Data Dictionary providing information about the fields in CSV files following the ESS-DIVE CSV File Formatting Guidelines Reporting Format, TLS_flmd.csv is a File Level Metadata file providing information about each file in the data package following the ESS-DIVE File Level Metadata Reporting Format, and README.txt is a text file describing the overall project and file structure. - Level 0 data are the raw data (.PROJ folders) as recorded by the Riegl VZ-400i TLS instrument before scan co-registration and post-processing with the Riegl's proprietary RiSCAN PRO software, which requires a license. - Level 1 data contain post-processed, co-registered data from each scan area. The "PointClouds" folder for each scan area contains a .las file with 1 cm resolution point cloud data exported from RiSCAN PRO. These are the main files likely to be of interest to most users and can be further processed with any software capable of manipulating .las files (e.g. Python, R CloudCompare). The "Project Information" folder contains log files from post-processing in RiSCAN PRO that may be of interest to users who want to see detailed records of post-processing, including all PDF reports generated by RiSCAN PRO. The "ScanPositions" folder contains information about the final position of all TLS scans, after post-processing, in multiple formats. The file ScanPositions_*.csv provides final geo-referenced scan positions, and the file SOP_backup_*.csv can be used in RiSCAN PRO to restore the co-registered scan positions if users wish to re-process raw data (Level 0 .PROJ folders) with RiSCAN PRO software (e.g., subsample to a different resolution, exclude a certain scan position, or apply different filters on reflectance or deviation values) without redoing time-consuming co-registration steps.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1987

Computational structures for robotic computations

The computational problem of inverse kinematics and inverse dynamics of robot manipulators by taking advantage of parallelism and pipelining architectures is discussed. For the computation of inverse kinematic position solution, a maximum pipelined CORDIC architecture has been designed based on a functional decomposition of the closed-form joint equations. For the inverse dynamics computation, an efficient p-fold parallel algorithm to overcome the recurrence problem of the Newton-Euler equations of motion to achieve the time lower bound of O(log sub 2 n) has also been developed.

Lee, C. S. G.↗

NASA NTRS1989

Model atmospheres for K and M giants

To aid in the interpretations of observations of K and M giant stars, model atmospheres have been calculated, covering the range in effective temperature between 3000 and 4000 K and in surface gravity-log g between 0.0 and 2.0. These models are computed under the usual assumptions of hydrostatic equilibrium, constancy of total (radiative plus convective) flux, and LTE in plane-parallel, horizontally homogeneous geometry. A significant development in these models is the incorporation of an opacity-sampled treatment of absorption by water vapor, which becomes dominant at lower temperatures. The thermal structure and scaling properties of the models are discussed, as are the effects of certain composition changes expected in the course of stellar evolution.

Brown, Jeffery A.↗

DOE OSTI2024

Porous Iron Electrodes Reduce Energy Consumption During Electrocoagulation of a Virus Surrogate: Insights into Performance Enhancements Using Three-Dimensional Neutron Computed Tomography

Electrocoagulation has attracted significant attention as an alternative to conventional chemical coagulation because it is capable of removing a wide range of contaminants and has several potential advantages. In contrast to most electrocoagulation research that has been performed with nonporous electrodes, in this study, we demonstrate energy-efficient iron electrocoagulation using porous electrodes. In batch operation, investigation of the external pore structures through optical microscopy suggested that a low porosity electrode with sparse connection between pores may lead to mechanical failure of the pore network during electrolysis, whereas a high porosity electrode is vulnerable to pore clogging. Electrodes with intermediate porosity, instead, only suffered a moderate surface deposition, leading to electrical energy savings of 21% and 36% in terms of electrocoagulant delivery and unit log virus reduction, respectively. Neutron computed tomography revealed the critical role of electrode porosity in utilizing the electrode’s internal surface for electrodissolution and effective delivery of electrocoagulant to the bulk. Energy savings of up to 88% in short-term operation were obtained with porous electrodes in a continuous flow-through system. Further investigation on the impact of current density and porosity in long-term operation is desired as well as the capital cost of porous electrodes.

42 ENGINEERING↗

NASA NTRS1986

The frequency spectrum of C sub n sup 2 from MST radar data

In a recent study (Nastrom et al., 1986), the variability of the refractivity turbulence structure constant, C sub n(2), was examined using observations from the stratosphere troposphere/mesosphere stratosphere troposphere (ST/MST) radar at Poker Flat, Alaska, and Platteville, Colorado. Variations of C2 with height, season, and weather conditions were examined. Also, the autocorrelation function and the frequency distribution of C sub n(2) were studied, and it was shown that C sub n(2), follows a log-normal frequency distribution. One of the more tentative results given in that paper is a first look at the spectrum of log C sub n(2), as a function of frequency at Poker Flat. This spectrum appears to obey a power law relation with frequency, P(F) approx. F(k), with k near -5/3 at periods between about 4 hours and 6 days, and with k near -1 at shorter periods. Power law behavior of a spectrum often helps us to infer the underlying dynamics which give rise to this spectrum, and it is thus of some concern to establish further confidence in the spectral shape. The purpose here is to address these questions.

Nastrom, G. D.↗

NASA NTRS1986

The ionization structure of the Orion Nebula - Infrared line observations and models

Observations of the forbidden O III 52 and 88 microns lines and the forbidden N III 57 microns line have been made at six positions and the forbidden Ne III 36 microns line at four positions in the Orion Nebula to probe its ionization structure. The wavelength of the forbidden Ne III line was measured to be 36.009-36.017 microns. Electron densities and abundance ratios of N(++)/O(++) have been calculated and compared to other radio and optical observations. Detailed one-component and two-component (bar plus halo) spherical models were calculated for exciting stars with effective temperatures of 37,000-40,000 K and log g = 4.0 and 4.5. Both the new IR observations and the visible line measurements of oxygen and nitrogen require Teff of no more than 37,000 K. However, the doubly ionized neon requires a model with Teff of at least 39,000 K, which is more consistent with that inferred from the radio flux or spectral type. These differences in Teff are not due to effects of dust on the stellar radiation field but are probably due to inaccuracies in the assumed stellar spectrum. Neon and nitrogen are approximately solar, but oxygen is half-solar in abundance. From the IR O(++) lines, it is concluded that the ionization bar results from an increase in column depth rather than from a local density enhancement.

Simpson, J. P.↗

NASA NTRS1989

Dust of Orionid meteor shower in the Earth atmosphere before and after Halley's Comet

Among the interesting questions concerning meteor streams associated with Comet Halley is the question of whether or not the activity of a meteor stream was connected with the approach of the comet to the terrestrial orbit in 1985 to 1986. Meteoric aerosols getting to the upper atmosphere can be detected by twilight sounding, as has been done previously. It turns out that not only parameters describing some properties of aerosol can be obtained by twilight sounding, but also characteristics concerning the structure of the stream can be derived. Among the yearly active streams, the Orionides have always attracted the attention of scientists. The period of activity of the Orionides is October 18 to 26, and the maximum stream activity is October 21. In detecting aerosol layers in the terrestrial atmosphere, a notion of the logarithmic intensity gradient of scattered twilight light is used, d log I/dH, where I is intensity and H is the real twilight beam height, which is a function of the wavelength observed. A photoelectric photometer with an interference filter at the wavelength of 610 nm is used. The observation were carried out in two points of the solar vertical; the zenith angle of the observation points was + or - 60 degrees. The recording was carried on continuously in each direction during a minute, then the system was switched to the other direction. A calibration standard was recorded before each observation. The observation dates in the Orionid periods of 1984, 1986, and 1987 are given.

Mateshvili, G.↗

DOE OSTI2025

Optimizing Alabama’s CO 2 Storage in Shelby County (Project OASIS): Task 6.0 Deliverable – CarbonSAFE Phase III Readiness

The OASIS CarbonSAFE Phase II Project OASIS (Optimizing Alabama’s CO 2 Storage in Shelby County) is a geologic and reservoir characterization study designed to evaluate deep saline formations for potential long-term carbon dioxide (CO 2 ) storage in central Alabama near the National Carbon Capture Center (NCCC) and Alabama Power’s Plant Gaston. The project centers on understanding the potential of the Cambro-Ordovician Knox Group and underlying strata such as the Conasauga and Rome Formations for geologic storage of CO 2 . These formations were investigated as part of SECARB-USA (DE-FE0031830) and Project OASIS through the drilling of two stratigraphic test wells to obtain electronic well logs, core, and sidewall core plugs. These data provide direct measurements of porosity, permeability, and lithologic variability critical for reservoir characterization. Complementing the well program, a limited 2D seismic survey was conducted to help select the site for Westover #2 as part of SECARB-USA (DE-FE0031830), and a more regional Seismic Exchange (SEI) seismic survey was licensed and interpreted to define structural and stratigraphic frameworks in a new Static Earth Model (SEM), map reservoir continuity, and to identify potential sealing intervals. Integrated with geologic and reservoir modeling, these datasets form the basis for evaluating storage capacity, injectivity, and containment. While this document endeavors to provide readers with a high-level overview of Project OASIS activities and its suitability for subsequent CarbonSAFE Phases, such as a Phase III effort. Other project deliverables and milestones will provide more details on individual subjects.

20 FOSSIL-FUELED POWER PLANTS↗

NASA NTRS1992

The Starburst-AGN Connection: A Sensitive VLBI Survey of Luminous IRAS Galaxies

Results of an 18 cm VLBI survey of 31 luminous (L_(fir) greater than 10^(11.25)L dot circle),radio-compact (theta less than approximately 0."25) infrared galaxies are presented. Over half thesample galaxies show high-brightness temperature emission, with T_b greater than 10^5K andstructure on scales of 5 - 150 mas. The median VLBI core power for detected sources is log P_(core)= 22.0(WHz^(-1)0, and the ratio of core to total 1.6 GHz flux density less than S_(core)/S_(total)greater than = 0.12. The limits for non- detected sources are similar, consistent with a picture inwhich all the galaxies have compact cores at a level of a few percent of the total radio flux density. Characteristics of the extended radio structure, infrared properties and optical excitation are not goodindicators of the detectability of VLBI-scale emission. Structural information and energeticconsiderations rule out a single supernova interpretation of the compact emission in these galaxies,though we cannot exclude the possibility of several simultaneous extraordinarily luminous radiosupernovae within the central few hundred pc^3. Our results instead favor the presence of an AGNobscured by starburst-related dust.

Lonsdale, Carol J.↗

DOE OSTI2026

CoLoRe-2LPT: Lyman-$α$ mock catalogues for the validation of DESI cosmological analyses

The Lyman-$α$ (Ly$α$) forest has become a crucial probe for studying the large-scale structure of the universe at high redshift ($z > 2$), providing powerful constraints on Baryon Acoustic Oscillations (BAO) and the full-shape (FS) clustering of matter. As a key ingredient for upcoming BAO and FS analyses, we present a new generation of fast cosmological Ly$α$ mocks based on second-order Lagrangian perturbation theory (2LPT). These new mocks significantly improve upon previous log-normal approaches, both at accurately capturing small scale clustering and at recovering the non-linear broadening of the BAO peak. They are able to reproduce Ly$α$ statistics within $10\%$ of the latest DESI measurement; including the Ly$α$ bias and the redshift-space distortion $β$ parameter, mean transmitted flux, and 1D power spectrum. The corresponding quasar (QSO) clustering is also improved with respect to previous approaches, calibrated against high-resolution Abacus simulations, recovering the observational QSO linear bias to less than $5\%$ and improving redshift-space distortions via 2LPT velocities and the addition of Fingers-of-God effects. Furthermore, these mocks incorporate high column density systems and metal lines, allowing us to explore the effects and systematics induced by these astrophysical contaminants. This new set of mocks has been key for enhancing the modeling and validation of the DESI DR2 Ly$α$ full shape cosmological analysis. This work provides a physically motivated and computationally efficient tool for simulating current and next-generation Ly$α$ surveys and validating FS and BAO analysis.

Bernal, M.F. Ruiz-Herrera [Madrid, CIEMAT] (ORCID:↗

DOE OSTI2023

A direct numerical simulation study for confined non-isothermal jet impingement at moderate nozzle-to-plate distances: Capturing jet-to-ambient density effects

A direct numerical simulation (DNS) campaign is deployed for a series of confined downward oriented, non-isothermal turbulent impinging jet configurations. A baseline Reynolds number of 9960 is obtained through a precursor DNS pipe flow simulation (Re τ = 505). Three jet temperature configurations (confinement height to nozzle diameter of three) enter a cylindrical domain that share ambient and impingement plate temperatures (298.15 K). The range of jet temperatures are crafted such that the ratio of inlet to ambient density varies from unity to 0.52, showcasing the effect of density disparity on flow characteristics such as core collapse, radial mixing of momentum and energy, near-wall stagnation behavior, wall-jet profiles, and large-scale vortical structures. Surface quantities provided include mean radial heat flux and wall-shear stress profiles, and heat flux histograms at select radial stations. Results showcase increased radial normal stresses for higher temperature jets that support increased mixing, resulting in large-scale recirculation structures that are smaller, while retaining similar normalized radial wall profiles for shear stress, heat flux and pressure. Furthermore, radial plots for wall shear stress and Nusselt number showcase strong radial decay as compared to previous configurations that share similar jet and ambient temperatures. For the 373.15 K case, a Gaussian-like histogram for heat fluxes at the impingement plate transitions to a log-normal profile as radial distances increase. In contrast, the 573.15 K configuration displays a bi-modal heat flux characteristic at the impingement plate, and in similar manner to the moderate temperature counterpart, transitions to a log-normal profile at larger radial distances.

33 ADVANCED PROPULSION SYSTEMS↗